RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 FAM171A1Q5VUB5 890 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 KRTAP5-11Q6L8G4 156 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 TMEM88Q6PEY1 159 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 AKAP14Q86UN6 197 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 FAM131BQ86XD5 332 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 KATNAL2Q8IYT4 538 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 HACE1Q8IYU2 909 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 RBMXL3Q8N7X1 1067 aaKnown RBP4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 FADS6Q8N9I5 356 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 ASCC1Q8N9N2 400 aaKnown RBP4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 FNDC5Q8NAU1 212 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 PTPMT1Q8WUK0 201 aaPredicted RBP4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 FAM122AQ96E09 287 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 MAGED4Q96JG8 741 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 FAM20AQ96MK3 541 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 ZNF558Q96NG5 402 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 INPP4AQ96PE3 977 aaPredicted RBP4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 CD180Q99467 661 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 GPA33Q99795 319 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 MECRQ9BV79 373 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 HDHD2Q9H0R4 259 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 HRH4Q9H3N8 390 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 FAM83DQ9H4H8 585 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 RNPEPL1Q9HAU8 725 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 MRPL47Q9HD33 250 aaKnown RBP4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 MMP25Q9NPA2 562 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 RRP7BPQ9NSQ0 103 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 LIN7CQ9NUP9 197 aaKnown RBP4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 PAQR5Q9NXK6 330 aaPredicted RBP4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 OGFRQ9NZT2 677 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 IL20RAQ9UHF4 553 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 FZD10Q9ULW2 581 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 PCDHA7Q9UN72 937 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 PLCL2Q9UPR0 1127 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 ERVK-11Q9UQG0 969 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 NIP7Q9Y221 180 aaKnown RBP eCLIP4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 OSGIN2Q9Y236 505 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 RCE1Q9Y256 329 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 SRPRBQ9Y5M8 271 aaKnown RBP4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 ROCK1Q13464 1354 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 TEX13CA0A0J9YWL9 993 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 A0A0J9YYE9 177 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 TMEM272A0A1B0GTI8 110 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 LOC105371267A0A1B0GV96 52 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 C5orf52A6NGY3 159 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 SDR42E2A6NKP2 422 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 C4orf47A7E2U8 309 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 KBTBD13C9JR72 458 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 LIASO43766 372 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 MITFO75030 526 aaPredicted RBP4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 PGLSO95336 258 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 TRBC1P01850 177 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 RLN1P04808 185 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 MYZAPP0CAP1 466 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 ZNF8P17098 575 aaPredicted RBP4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 HOXB8P17481 243 aaPredicted RBP4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 CTPS1P17812 591 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 SRMP19623 302 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 TCN1P20061 433 aaPredicted RBP4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 TUBG1P23258 451 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 PKLRP30613 574 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 HOXA7P31268 230 aaPredicted RBP4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 SHMT1P34896 483 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 SPAM1P38567 509 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 PNPLA4P41247 253 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 ACADSBP45954 432 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 CAMPP49913 170 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 SRP54P61011 504 aaKnown RBP4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 PDE1BQ01064 536 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 LGALS3BPQ08380 585 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 MZT1Q08AG7 82 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 CALCOCO2Q13137 446 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 SLAQ13239 276 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 SPANXN2Q5MJ10 180 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 Q5PR19 223 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 CLVS2Q5SYC1 327 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 MANEALQ5VSG8 457 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 LCN1P1Q5VSP4 162 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 CARD17Q5XLA6 110 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 BZW1Q7L1Q6 419 aaKnown RBP4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 BHLHA15Q7RTS1 189 aaPredicted RBP4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 PRSS42Q7Z5A4 293 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 CENPVQ7Z7K6 275 aaPredicted RBP4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 AACSQ86V21 672 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 TRABD2AQ86V40 505 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 CDR2LQ86X02 465 aaPredicted RBP4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 SIAH3Q8IW03 269 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 ADGRF4Q8IZF3 695 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 GPR137CQ8N3F9 429 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 TMEM199Q8N511 208 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 ICA1LQ8NDH6 482 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 CADM4Q8NFZ8 388 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 OR56B1Q8NGI3 324 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 BBS10Q8TAM1 723 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 UBA3Q8TBC4 463 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 SEPT8Q92599 483 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 SNRNP40Q96DI7 357 aaKnown RBP4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 BPIFA3Q9BQP9 254 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 NUP58Q9BVL2 599 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 SPATA16Q9BXB7 569 aa4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms