RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.27□□□□□ -0.61
NPHP4-204ENST00000460696 A0A1W2PRB8 838 aa11.27□□□□□ -0.61
NPHP4-204ENST00000460696 OR1F1O43749 312 aa11.27□□□□□ -0.61
NPHP4-204ENST00000460696 EIF2S1P05198 315 aaKnown RBP11.27□□□□□ -0.61
NPHP4-204ENST00000460696 TNNI3P19429 210 aa11.27□□□□□ -0.61
NPHP4-204ENST00000460696 NTSP30990 170 aa11.27□□□□□ -0.61
NPHP4-204ENST00000460696 CCR7P32248 378 aa11.27□□□□□ -0.61
NPHP4-204ENST00000460696 OR1E2P47887 323 aa11.27□□□□□ -0.61
NPHP4-204ENST00000460696 EIF2B2P49770 351 aaKnown RBP11.27□□□□□ -0.61
NPHP4-204ENST00000460696 PSMD7P51665 324 aa11.27□□□□□ -0.61
NPHP4-204ENST00000460696 ZXDBP98169 803 aa11.27□□□□□ -0.61
NPHP4-204ENST00000460696 VTCN1Q7Z7D3 282 aa11.27□□□□□ -0.61
NPHP4-204ENST00000460696 TCEAL8Q8IYN2 117 aa11.27□□□□□ -0.61
NPHP4-204ENST00000460696 DNAJB8Q8NHS0 232 aa11.27□□□□□ -0.61
NPHP4-204ENST00000460696 POP5Q969H6 163 aaKnown RBP11.27□□□□□ -0.61
NPHP4-204ENST00000460696 KXD1Q9BQD3 176 aa11.27□□□□□ -0.61
NPHP4-204ENST00000460696 SLC35A5Q9BS91 424 aa11.27□□□□□ -0.61
NPHP4-204ENST00000460696 SPHK2Q9NRA0 654 aa11.27□□□□□ -0.61
NPHP4-204ENST00000460696 KLHL28Q9NXS3 571 aa11.27□□□□□ -0.61
NPHP4-204ENST00000460696 ENOPH1Q9UHY7 261 aa11.27□□□□□ -0.61
NPHP4-204ENST00000460696 LINC01553A4QN01 128 aa11.27□□□□□ -0.61
NPHP4-204ENST00000460696 PI15O43692 258 aa11.27□□□□□ -0.61
NPHP4-204ENST00000460696 KRT8P05787 483 aa11.27□□□□□ -0.61
NPHP4-204ENST00000460696 RHOP08100 348 aa11.27□□□□□ -0.61
NPHP4-204ENST00000460696 ZNF30P17039 623 aa11.27□□□□□ -0.61
NPHP4-204ENST00000460696 HMGA1P17096 107 aaKnown RBP11.27□□□□□ -0.61
NPHP4-204ENST00000460696 MAT2AP31153 395 aaKnown RBP11.27□□□□□ -0.61
NPHP4-204ENST00000460696 RPS7P62081 194 aaKnown RBP11.27□□□□□ -0.61
NPHP4-204ENST00000460696 IFI44LQ53G44 452 aa11.27□□□□□ -0.61
NPHP4-204ENST00000460696 ATAD3BQ5T9A4 648 aa11.27□□□□□ -0.61
NPHP4-204ENST00000460696 ZNF641Q96N77 438 aaPredicted RBP11.27□□□□□ -0.61
NPHP4-204ENST00000460696 COPS4Q9BT78 406 aa11.27□□□□□ -0.61
NPHP4-204ENST00000460696 CLN6Q9NWW5 311 aa11.27□□□□□ -0.61
NPHP4-204ENST00000460696 DLGAP4Q9Y2H0 992 aa11.27□□□□□ -0.61
NPHP4-204ENST00000460696 TMEM98Q9Y2Y6 226 aa11.27□□□□□ -0.61
NPHP4-204ENST00000460696 PCDHGB5Q9Y5G0 923 aa11.27□□□□□ -0.61
NPHP4-204ENST00000460696 LSM1O15116 133 aaKnown RBP11.26□□□□□ -0.61
NPHP4-204ENST00000460696 ADAMDEC1O15204 470 aa11.26□□□□□ -0.61
NPHP4-204ENST00000460696 CYP7B1O75881 506 aa11.26□□□□□ -0.61
NPHP4-204ENST00000460696 IFNW1P05000 195 aa11.26□□□□□ -0.61
NPHP4-204ENST00000460696 TFPTP0C1Z6 253 aa11.26□□□□□ -0.61
NPHP4-204ENST00000460696 GGT1P19440 569 aa11.26□□□□□ -0.61
NPHP4-204ENST00000460696 DNAJA1P31689 397 aaKnown RBP11.26□□□□□ -0.61
NPHP4-204ENST00000460696 CLCN7P51798 805 aa11.26□□□□□ -0.61
NPHP4-204ENST00000460696 CLDN8P56748 225 aa11.26□□□□□ -0.61
NPHP4-204ENST00000460696 TXNL4AP83876 142 aaKnown RBP11.26□□□□□ -0.61
NPHP4-204ENST00000460696 SPATS1Q496A3 300 aa11.26□□□□□ -0.61
NPHP4-204ENST00000460696 C6orf141Q5SZD1 244 aa11.26□□□□□ -0.61
NPHP4-204ENST00000460696 ZNF773Q6PK81 442 aa11.26□□□□□ -0.61
NPHP4-204ENST00000460696 CHERPQ8IWX8 916 aaKnown RBP11.26□□□□□ -0.61
NPHP4-204ENST00000460696 SLC39A11Q8N1S5 342 aa11.26□□□□□ -0.61
NPHP4-204ENST00000460696 NETO1Q8TDF5 533 aa11.26□□□□□ -0.61
NPHP4-204ENST00000460696 FRS2Q8WU20 508 aa11.26□□□□□ -0.61
NPHP4-204ENST00000460696 BCL7CQ8WUZ0 217 aaPredicted RBP11.26□□□□□ -0.61
NPHP4-204ENST00000460696 YIPF2Q9BWQ6 316 aa11.26□□□□□ -0.61
NPHP4-204ENST00000460696 ITM2BQ9Y287 266 aa11.26□□□□□ -0.61
NPHP4-204ENST00000460696 TMED5Q9Y3A6 229 aa11.26□□□□□ -0.61
NPHP4-204ENST00000460696 ZNF99A8MXY4 864 aaPredicted RBP11.26□□□□□ -0.61
NPHP4-204ENST00000460696 MYL12BO14950 172 aa11.26□□□□□ -0.61
NPHP4-204ENST00000460696 NFATC1O95644 943 aa11.26□□□□□ -0.61
NPHP4-204ENST00000460696 ASGR2P07307 311 aa11.26□□□□□ -0.61
NPHP4-204ENST00000460696 CHRM5P08912 532 aaPredicted RBP11.26□□□□□ -0.61
NPHP4-204ENST00000460696 MYF6P23409 242 aa11.26□□□□□ -0.61
NPHP4-204ENST00000460696 GRIA2P42262 883 aa11.26□□□□□ -0.61
NPHP4-204ENST00000460696 TAS2R50P59544 299 aa11.26□□□□□ -0.61
NPHP4-204ENST00000460696 ERVFC1P60507 584 aa11.26□□□□□ -0.61
NPHP4-204ENST00000460696 PMS2P3Q13401 168 aa11.26□□□□□ -0.61
NPHP4-204ENST00000460696 NCF4Q15080 339 aa11.26□□□□□ -0.61
NPHP4-204ENST00000460696 FOXB2Q5VYV0 432 aa11.26□□□□□ -0.61
NPHP4-204ENST00000460696 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP11.26□□□□□ -0.61
NPHP4-204ENST00000460696 AMZ2Q86W34 360 aa11.26□□□□□ -0.61
NPHP4-204ENST00000460696 CHCHD6Q9BRQ6 235 aa11.26□□□□□ -0.61
NPHP4-204ENST00000460696 SLC46A2Q9BY10 475 aa11.26□□□□□ -0.61
NPHP4-204ENST00000460696 YTHDF1Q9BYJ9 559 aaKnown RBP11.26□□□□□ -0.61
NPHP4-204ENST00000460696 THUMPD1Q9NXG2 353 aaKnown RBP11.26□□□□□ -0.61
NPHP4-204ENST00000460696 GPRC5BQ9NZH0 403 aa11.26□□□□□ -0.61
NPHP4-204ENST00000460696 ZNF282Q9UDV7 671 aaPredicted RBP11.26□□□□□ -0.61
NPHP4-204ENST00000460696 CD300AQ9UGN4 299 aa11.26□□□□□ -0.61
NPHP4-204ENST00000460696 TBC1D3DA0A087WVF3 549 aa11.26□□□□□ -0.61
NPHP4-204ENST00000460696 TBC1D3IA0A087WXS9 549 aa11.26□□□□□ -0.61
NPHP4-204ENST00000460696 TBC1D3EA0A087X179 549 aa11.26□□□□□ -0.61
NPHP4-204ENST00000460696 TBC1D3KA0A087X1G2 549 aa11.26□□□□□ -0.61
NPHP4-204ENST00000460696 TBC1D3FA6NER0 549 aaPredicted RBP11.26□□□□□ -0.61
NPHP4-204ENST00000460696 TBC1D3LB9A6J9 549 aa11.26□□□□□ -0.61
NPHP4-204ENST00000460696 TBC1D3HP0C7X1 549 aa11.26□□□□□ -0.61
NPHP4-204ENST00000460696 KDELR2P33947 212 aa11.26□□□□□ -0.61
NPHP4-204ENST00000460696 SEPHS1P49903 392 aa11.26□□□□□ -0.61
NPHP4-204ENST00000460696 TEAD4Q15561 434 aa11.26□□□□□ -0.61
NPHP4-204ENST00000460696 AAK1Q2M2I8 961 aa11.26□□□□□ -0.61
NPHP4-204ENST00000460696 VMACQ2NL98 169 aa11.26□□□□□ -0.61
NPHP4-204ENST00000460696 TRIM71Q2Q1W2 868 aaKnown RBP11.26□□□□□ -0.61
NPHP4-204ENST00000460696 TJAP1Q5JTD0 557 aa11.26□□□□□ -0.61
NPHP4-204ENST00000460696 RBM48Q5RL73 367 aaKnown RBP11.26□□□□□ -0.61
NPHP4-204ENST00000460696 PLEKHS1Q5SXH7 462 aa11.26□□□□□ -0.61
NPHP4-204ENST00000460696 FAM46CQ5VWP2 391 aa11.26□□□□□ -0.61
NPHP4-204ENST00000460696 TBC1D3GQ6DHY5 549 aa11.26□□□□□ -0.61
NPHP4-204ENST00000460696 TBC1D3CQ6IPX1 549 aa11.26□□□□□ -0.61
NPHP4-204ENST00000460696 FAM180BQ6P0A1 224 aa11.26□□□□□ -0.61
NPHP4-204ENST00000460696 NEK5Q6P3R8 708 aa11.26□□□□□ -0.61
NPHP4-204ENST00000460696 SBSNQ6UWP8 590 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms