RNA–Protein interactions for RNA: ENST00000449049.7

SHMT2-203, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2 BASIC

Gene SHMT2, Length 2,121 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-203ENST00000449049 TWIST2Q8WVJ9 160 aa13.49□□□□□ -0.25
SHMT2-203ENST00000449049 USP7Q93009 1102 aa13.49□□□□□ -0.25
SHMT2-203ENST00000449049 UBE2E3Q969T4 207 aa13.49□□□□□ -0.25
SHMT2-203ENST00000449049 TRAPPC9Q96Q05 1148 aa13.49□□□□□ -0.25
SHMT2-203ENST00000449049 MAP3K3Q99759 626 aa13.49□□□□□ -0.25
SHMT2-203ENST00000449049 DPYSL5Q9BPU6 564 aa13.49□□□□□ -0.25
SHMT2-203ENST00000449049 NUDT22Q9BRQ3 303 aa13.49□□□□□ -0.25
SHMT2-203ENST00000449049 NSRP1Q9H0G5 558 aaKnown RBP13.49□□□□□ -0.25
SHMT2-203ENST00000449049 SEMA5BQ9P283 1151 aa13.49□□□□□ -0.25
SHMT2-203ENST00000449049 SNX6Q9UNH7 406 aa13.49□□□□□ -0.25
SHMT2-203ENST00000449049 PCDHGA11Q9Y5H2 935 aa13.49□□□□□ -0.25
SHMT2-203ENST00000449049 USH1CQ9Y6N9 552 aa13.49□□□□□ -0.25
SHMT2-203ENST00000449049 MANBAO00462 879 aa13.48□□□□□ -0.25
SHMT2-203ENST00000449049 NTN3O00634 580 aaPredicted RBP13.48□□□□□ -0.25
SHMT2-203ENST00000449049 HAT1O14929 419 aa13.48□□□□□ -0.25
SHMT2-203ENST00000449049 HDAC3O15379 428 aa13.48□□□□□ -0.25
SHMT2-203ENST00000449049 CPNE6O95741 557 aa13.48□□□□□ -0.25
SHMT2-203ENST00000449049 KRT6AP02538 564 aa13.48□□□□□ -0.25
SHMT2-203ENST00000449049 KRT6BP04259 564 aa13.48□□□□□ -0.25
SHMT2-203ENST00000449049 ST6GAL1P15907 406 aa13.48□□□□□ -0.25
SHMT2-203ENST00000449049 SERPINB3P29508 390 aa13.48□□□□□ -0.25
SHMT2-203ENST00000449049 KRT6CP48668 564 aa13.48□□□□□ -0.25
SHMT2-203ENST00000449049 HTR6P50406 440 aa13.48□□□□□ -0.25
SHMT2-203ENST00000449049 ZNF33BQ06732 778 aa13.48□□□□□ -0.25
SHMT2-203ENST00000449049 C10orf62Q5T681 223 aaPredicted RBP13.48□□□□□ -0.25
SHMT2-203ENST00000449049 FRG2Q64ET8 278 aa13.48□□□□□ -0.25
SHMT2-203ENST00000449049 TMEM71Q6P5X7 295 aa13.48□□□□□ -0.25
SHMT2-203ENST00000449049 TMIGD1Q6UXZ0 262 aa13.48□□□□□ -0.25
SHMT2-203ENST00000449049 USP53Q70EK8 1073 aa13.48□□□□□ -0.25
SHMT2-203ENST00000449049 MAVSQ7Z434 540 aa13.48□□□□□ -0.25
SHMT2-203ENST00000449049 PRSS42Q7Z5A4 293 aa13.48□□□□□ -0.25
SHMT2-203ENST00000449049 OR7G3Q8NG95 312 aa13.48□□□□□ -0.25
SHMT2-203ENST00000449049 REPS1Q96D71 796 aa13.48□□□□□ -0.25
SHMT2-203ENST00000449049 FRG2BQ96QU4 278 aa13.48□□□□□ -0.25
SHMT2-203ENST00000449049 SIKE1Q9BRV8 207 aa13.48□□□□□ -0.25
SHMT2-203ENST00000449049 TRIM55Q9BYV6 548 aa13.48□□□□□ -0.25
SHMT2-203ENST00000449049 TUBB1Q9H4B7 451 aa13.48□□□□□ -0.25
SHMT2-203ENST00000449049 TMEM9Q9P0T7 183 aa13.48□□□□□ -0.25
SHMT2-203ENST00000449049 PDP2Q9P2J9 529 aa13.48□□□□□ -0.25
SHMT2-203ENST00000449049 CABIN1Q9Y6J0 2220 aa13.48□□□□□ -0.25
SHMT2-203ENST00000449049 SERTM1A2A2V5 107 aa13.48□□□□□ -0.25
SHMT2-203ENST00000449049 KIF1CO43896 1103 aaKnown RBP13.48□□□□□ -0.25
SHMT2-203ENST00000449049 CHEK2O96017 543 aa13.48□□□□□ -0.25
SHMT2-203ENST00000449049 JUNP05412 331 aaKnown RBP13.48□□□□□ -0.25
SHMT2-203ENST00000449049 TROVE2P10155 538 aaKnown RBP eCLIP13.48□□□□□ -0.25
SHMT2-203ENST00000449049 EZRP15311 586 aaKnown RBP13.48□□□□□ -0.25
SHMT2-203ENST00000449049 GRK3P35626 688 aa13.48□□□□□ -0.25
SHMT2-203ENST00000449049 INHBCP55103 352 aa13.48□□□□□ -0.25
SHMT2-203ENST00000449049 ZIC1Q15915 447 aa13.48□□□□□ -0.25
SHMT2-203ENST00000449049 PDCD2Q16342 344 aaPredicted RBP13.48□□□□□ -0.25
SHMT2-203ENST00000449049 C19orf47Q8N9M1 422 aaKnown RBP13.48□□□□□ -0.25
SHMT2-203ENST00000449049 ELOVL6Q9H5J4 265 aa13.48□□□□□ -0.25
SHMT2-203ENST00000449049 NPHS2Q9NP85 383 aa13.48□□□□□ -0.25
SHMT2-203ENST00000449049 PILRAQ9UKJ1 303 aa13.48□□□□□ -0.25
SHMT2-203ENST00000449049 ATXN7L1Q9ULK2 861 aaPredicted RBP13.48□□□□□ -0.25
SHMT2-203ENST00000449049 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.47□□□□□ -0.25
SHMT2-203ENST00000449049 FEZF1A0PJY2 475 aa13.47□□□□□ -0.25
SHMT2-203ENST00000449049 SLC9B1P1A6NJY1 282 aa13.47□□□□□ -0.25
SHMT2-203ENST00000449049 TOX3O15405 576 aaPredicted RBP13.47□□□□□ -0.25
SHMT2-203ENST00000449049 ULK1O75385 1050 aa13.47□□□□□ -0.25
SHMT2-203ENST00000449049 SKAP2O75563 359 aaPredicted RBP13.47□□□□□ -0.25
SHMT2-203ENST00000449049 HOXB3P14651 431 aaPredicted RBP13.47□□□□□ -0.25
SHMT2-203ENST00000449049 SCTRP47872 440 aa13.47□□□□□ -0.25
SHMT2-203ENST00000449049 BTKQ06187 659 aa13.47□□□□□ -0.25
SHMT2-203ENST00000449049 IFT88Q13099 833 aa13.47□□□□□ -0.25
SHMT2-203ENST00000449049 ABRAXAS2Q15018 415 aa13.47□□□□□ -0.25
SHMT2-203ENST00000449049 ZNF574Q6ZN55 896 aaPredicted RBP13.47□□□□□ -0.25
SHMT2-203ENST00000449049 RNF44Q7L0R7 432 aa13.47□□□□□ -0.25
SHMT2-203ENST00000449049 TMPRSS9Q7Z410 1059 aa13.47□□□□□ -0.25
SHMT2-203ENST00000449049 CPLX4Q7Z7G2 160 aa13.47□□□□□ -0.25
SHMT2-203ENST00000449049 ANKRD53Q8N9V6 530 aa13.47□□□□□ -0.25
SHMT2-203ENST00000449049 OR4D9Q8NGE8 314 aa13.47□□□□□ -0.25
SHMT2-203ENST00000449049 CCT7Q99832 543 aa13.47□□□□□ -0.25
SHMT2-203ENST00000449049 CHRNA10Q9GZZ6 450 aa13.47□□□□□ -0.25
SHMT2-203ENST00000449049 KLHL25Q9H0H3 589 aa13.47□□□□□ -0.25
SHMT2-203ENST00000449049 RHBGQ9H310 441 aa13.47□□□□□ -0.25
SHMT2-203ENST00000449049 MEAF6Q9HAF1 191 aa13.47□□□□□ -0.25
SHMT2-203ENST00000449049 FARSBQ9NSD9 589 aaKnown RBP13.47□□□□□ -0.25
SHMT2-203ENST00000449049 KLHL14Q9P2G3 628 aa13.47□□□□□ -0.25
SHMT2-203ENST00000449049 IGHV5-51A0A0C4DH38 117 aa13.46□□□□□ -0.25
SHMT2-203ENST00000449049 PIP5K1BO14986 540 aa13.46□□□□□ -0.25
SHMT2-203ENST00000449049 LCMT2O60294 686 aaKnown RBP13.46□□□□□ -0.25
SHMT2-203ENST00000449049 FAM107AO95990 144 aa13.46□□□□□ -0.25
SHMT2-203ENST00000449049 PDYNP01213 254 aa13.46□□□□□ -0.25
SHMT2-203ENST00000449049 GSTM2P28161 218 aa13.46□□□□□ -0.25
SHMT2-203ENST00000449049 SERPINB1P30740 379 aa13.46□□□□□ -0.25
SHMT2-203ENST00000449049 BCL6P41182 706 aa13.46□□□□□ -0.25
SHMT2-203ENST00000449049 RPS15AP62244 130 aaKnown RBP13.46□□□□□ -0.25
SHMT2-203ENST00000449049 ILKQ13418 452 aa13.46□□□□□ -0.25
SHMT2-203ENST00000449049 OTOGLQ3ZCN5 2332 aa13.46□□□□□ -0.25
SHMT2-203ENST00000449049 CACHD1Q5VU97 1274 aa13.46□□□□□ -0.25
SHMT2-203ENST00000449049 ADNP2Q6IQ32 1131 aa13.46□□□□□ -0.25
SHMT2-203ENST00000449049 FBXO42Q6P3S6 717 aa13.46□□□□□ -0.25
SHMT2-203ENST00000449049 TRIM46Q7Z4K8 759 aa13.46□□□□□ -0.25
SHMT2-203ENST00000449049 VN1R5Q7Z5H4 357 aa13.46□□□□□ -0.25
SHMT2-203ENST00000449049 GLRX5Q86SX6 157 aa13.46□□□□□ -0.25
SHMT2-203ENST00000449049 PLD3Q8IV08 490 aa13.46□□□□□ -0.25
SHMT2-203ENST00000449049 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.46□□□□□ -0.252e-6■■■■■ 41.4
SHMT2-203ENST00000449049 COL27A1Q8IZC6 1860 aaPredicted RBP13.46□□□□□ -0.25
SHMT2-203ENST00000449049 TBC1D19Q8N5T2 526 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 80.5 ms