RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, human

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MSH6-204	ENST00000445503	PLEKHG7	Q6ZR37	379 aa		11.5	□□□□□ -0.57
MSH6-204	ENST00000445503	DEPDC4	Q8N2C3	294 aa		11.5	□□□□□ -0.57
MSH6-204	ENST00000445503	MYLIP	Q8WY64	445 aa		11.5	□□□□□ -0.57
MSH6-204	ENST00000445503	PPCDC	Q96CD2	204 aa		11.5	□□□□□ -0.57
MSH6-204	ENST00000445503	CPPED1	Q9BRF8	314 aa	Predicted RBP	11.5	□□□□□ -0.57
MSH6-204	ENST00000445503	EMILIN2	Q9BXX0	1053 aa		11.5	□□□□□ -0.57
MSH6-204	ENST00000445503	CTPS2	Q9NRF8	586 aa		11.5	□□□□□ -0.57
MSH6-204	ENST00000445503	RAD18	Q9NS91	495 aa		11.5	□□□□□ -0.57
MSH6-204	ENST00000445503	CLN6	Q9NWW5	311 aa		11.5	□□□□□ -0.57
MSH6-204	ENST00000445503	TOR4A	Q9NXH8	423 aa		11.5	□□□□□ -0.57
MSH6-204	ENST00000445503	WDR37	Q9Y2I8	494 aa		11.5	□□□□□ -0.57
MSH6-204	ENST00000445503	PSME4	Q14997	1843 aa		11.5	□□□□□ -0.57
MSH6-204	ENST00000445503	NPIPB15	A6NHN6	443 aa	Predicted RBP	11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	TAF4	O00268	1085 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	HOXA2	O43364	376 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	GPC1	P35052	558 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	MAPK8	P45983	427 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	BDKRB1	P46663	353 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	SOWAHC	Q53LP3	525 aa	Predicted RBP	11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	IER5L	Q5T953	404 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	TRAF7	Q6Q0C0	670 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	CASP12	Q6UXS9	341 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	RRM2B	Q7LG56	351 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	RAVER1	Q8IY67	606 aa	Known RBP	11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	SLC38A4	Q969I6	547 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	PKP4	Q99569	1192 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	FAM83D	Q9H4H8	585 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	KIAA1522	Q9P206	1035 aa	Predicted RBP	11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	RUVBL1	Q9Y265	456 aa	Known RBP	11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	CAB39	Q9Y376	341 aa	Predicted RBP	11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	SOX14	O95416	240 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	IFNA14	P01570	189 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	CYBA	P13498	195 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	TNNI3	P19429	210 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	CCR7	P32248	378 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	CLK3	P49761	638 aa	Known RBP	11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	MEF2A	Q02078	507 aa	Predicted RBP	11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	DSC1	Q08554	894 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	ST3GAL4	Q11206	333 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	SREBF2	Q12772	1141 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	MAD2L1BP	Q15013	274 aa	Predicted RBP	11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	TST	Q16762	297 aa	Known RBP	11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	C17orf99	Q6UX52	265 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503		Q6ZVU0	165 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	CHST9	Q7L1S5	443 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	NANOGNB	Q7Z5D8	188 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	CADM3	Q8N126	398 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	ELMOD1	Q8N336	334 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	NFKBID	Q8NI38	313 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	FOXJ1	Q92949	421 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	SLC22A12	Q96S37	553 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	NEURL2	Q9BR09	285 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	CORO1B	Q9BR76	489 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	ACOT13	Q9NPJ3	140 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	NEDD8-MDP1	E9PL57	170 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	IDH3B	O43837	385 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	C8G	P07360	202 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	NEK5	Q6P3R8	708 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503		Q6ZVL8	140 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	SLC5A8	Q8N695	610 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	OR2AP1	Q8NGE2	309 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	PIH1D2	Q8WWB5	315 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	IPCEF1	Q8WWN9	437 aa	Predicted RBP	11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	SUV39H2	Q9H5I1	410 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	SLC52A3	Q9NQ40	469 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	NECTIN3	Q9NQS3	549 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	SNTG1	Q9NSN8	517 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	LHX3	Q9UBR4	397 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	BMP1	P13497	986 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	ETFA	P13804	333 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	SELP	P16109	830 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	IFI44L	Q53G44	452 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	TNFAIP8L2	Q6P589	184 aa	Predicted RBP	11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	THOC6	Q86W42	341 aa	Known RBP	11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	MSRB3	Q8IXL7	192 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	C10orf111	Q8N326	155 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	CAMKK1	Q8N5S9	505 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	WFDC5	Q8TCV5	224 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	OR51E2	Q9H255	320 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	OR51B5	Q9H339	312 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	MAGIX	Q9H6Y5	334 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	IL1RAP	Q9NPH3	570 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	B4GALT6	Q9UBX8	382 aa		11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	TMA7	Q9Y2S6	64 aa	Known RBP	11.49	□□□□□ -0.57
MSH6-204	ENST00000445503	ADAMDEC1	O15204	470 aa		11.48	□□□□□ -0.57
MSH6-204	ENST00000445503	PCDH7	O60245	1069 aa		11.48	□□□□□ -0.57
MSH6-204	ENST00000445503	KLK8	O60259	260 aa		11.48	□□□□□ -0.57
MSH6-204	ENST00000445503	CR2	P20023	1033 aa		11.48	□□□□□ -0.57
MSH6-204	ENST00000445503	NR4A2	P43354	598 aa		11.48	□□□□□ -0.57
MSH6-204	ENST00000445503	PHC1	P78364	1004 aa		11.48	□□□□□ -0.57
MSH6-204	ENST00000445503	ALDH6A1	Q02252	535 aa	Known RBP	11.48	□□□□□ -0.57
MSH6-204	ENST00000445503	GCNT6	Q5T4J0	391 aa		11.48	□□□□□ -0.57
MSH6-204	ENST00000445503	LRRC70	Q7Z2Q7	622 aa		11.48	□□□□□ -0.57
MSH6-204	ENST00000445503	NPAS4	Q8IUM7	802 aa		11.48	□□□□□ -0.57
MSH6-204	ENST00000445503	NAGS	Q8N159	534 aa		11.48	□□□□□ -0.57
MSH6-204	ENST00000445503	TCAIM	Q8N3R3	496 aa		11.48	□□□□□ -0.57
MSH6-204	ENST00000445503	OR6Q1	Q8NGQ2	317 aa		11.48	□□□□□ -0.57
MSH6-204	ENST00000445503	DNAJB8	Q8NHS0	232 aa		11.48	□□□□□ -0.57
MSH6-204	ENST00000445503	ZNF675	Q8TD23	568 aa		11.48	□□□□□ -0.57
MSH6-204	ENST00000445503	FATE1	Q969F0	183 aa		11.48	□□□□□ -0.57

Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms