RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 BHMTQ93088 406 aa15.88■□□□□ 0.13
CLCNKA-203ENST00000439316 SLC22A12Q96S37 553 aa15.88■□□□□ 0.13
CLCNKA-203ENST00000439316 PITX2Q99697 317 aa15.88■□□□□ 0.13
CLCNKA-203ENST00000439316 REXO4Q9GZR2 422 aaKnown RBP15.88■□□□□ 0.13
CLCNKA-203ENST00000439316 GIN1Q9NXP7 522 aa15.88■□□□□ 0.13
CLCNKA-203ENST00000439316 PMF1-BGLAPU3KQ54 211 aa15.88■□□□□ 0.13
CLCNKA-203ENST00000439316 DENND4CQ5VZ89 1909 aa15.88■□□□□ 0.13
CLCNKA-203ENST00000439316 KRBA1A5PL33 1030 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 TOR1BO14657 336 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 FPGTO14772 594 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 RGS10O43665 173 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 PRMT3O60678 531 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 SCN2BO60939 215 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 NADKO95544 446 aaPredicted RBP15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 ENGP17813 658 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 SERPINA4P29622 427 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 KDELR2P33947 212 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 GRK3P35626 688 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 SERPINB10P48595 397 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 HNMTP50135 292 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 ITGA1P56199 1179 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 WNT3P56703 355 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 RPS3AP61247 264 aaKnown RBP15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 IL1RL1Q01638 556 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 UGT8Q16880 541 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 PTCHD3Q3KNS1 767 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 FRG2Q64ET8 278 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 FAHD1Q6P587 224 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 CBLL1Q75N03 491 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 EIF3MQ7L2H7 374 aaKnown RBP15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 HORMAD1Q86X24 394 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 KREMEN2Q8NCW0 462 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 OR6Q1Q8NGQ2 317 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 ASB11Q8WXH4 323 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 GLMNQ92990 594 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 VOPP1Q96AW1 172 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 FRG2BQ96QU4 278 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 SIGLEC11Q96RL6 698 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 RHNO1Q9BSD3 238 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 EMILIN2Q9BXX0 1053 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 ACOT13Q9NPJ3 140 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 INIPQ9NRY2 104 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 PDP1Q9P0J1 537 aaPredicted RBP15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 PAIP2BQ9ULR5 123 aaKnown RBP15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 DIRAS1O95057 198 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 EPN2O95208 641 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 LRG1P02750 347 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 C8AP07357 584 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 MPC1LP0DKB6 136 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 BMP4P12644 408 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 PSMB9P28065 219 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 KRT20P35900 424 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 ST13P50502 369 aaKnown RBP15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 VBP1P61758 197 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 ZXDBP98169 803 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 ATP13A5Q4VNC0 1218 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 KIAA1614Q5VZ46 1190 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 LRRC66Q68CR7 880 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 TPRG1Q6ZUI0 275 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 PRSS48Q7RTY5 328 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 CYP2U1Q7Z449 544 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 VTCN1Q7Z7D3 282 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 TSPYL5Q86VY4 417 aaPredicted RBP15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 HSH2DQ96JZ2 352 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 PANX1Q96RD7 426 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 ALOXE3Q9BYJ1 711 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 IL21Q9HBE4 155 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 DNAJC11Q9NVH1 559 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 RWDD3Q9Y3V2 267 aa15.87■□□□□ 0.13
CLCNKA-203ENST00000439316 MAGEB17A8MXT2 336 aa15.86■□□□□ 0.13
CLCNKA-203ENST00000439316 FAM20BO75063 409 aa15.86■□□□□ 0.13
CLCNKA-203ENST00000439316 FADS2O95864 444 aaKnown RBP15.86■□□□□ 0.13
CLCNKA-203ENST00000439316 HIST1H2AGP0C0S8 130 aaPredicted RBP15.86■□□□□ 0.13
CLCNKA-203ENST00000439316 OR56A5P0C7T3 313 aa15.86■□□□□ 0.13
CLCNKA-203ENST00000439316 HIST1H2ADP20671 130 aa15.86■□□□□ 0.13
CLCNKA-203ENST00000439316 ALDH4A1P30038 563 aa15.86■□□□□ 0.13
CLCNKA-203ENST00000439316 IFITM3Q01628 133 aa15.86■□□□□ 0.13
CLCNKA-203ENST00000439316 SEMG2Q02383 582 aa15.86■□□□□ 0.13
CLCNKA-203ENST00000439316 SRSF11Q05519 484 aaKnown RBP15.86■□□□□ 0.13
CLCNKA-203ENST00000439316 SP140Q13342 867 aa15.86■□□□□ 0.13
CLCNKA-203ENST00000439316 SMN1Q16637 294 aaKnown RBP15.86■□□□□ 0.13
CLCNKA-203ENST00000439316 DGKKQ5KSL6 1271 aa15.86■□□□□ 0.13
CLCNKA-203ENST00000439316 CCDC81Q6ZN84 652 aa15.86■□□□□ 0.13
CLCNKA-203ENST00000439316 GALNT10Q86SR1 603 aa15.86■□□□□ 0.13
CLCNKA-203ENST00000439316 CCDC71Q8IV32 467 aaPredicted RBP15.86■□□□□ 0.13
CLCNKA-203ENST00000439316 ZNF540Q8NDQ6 660 aa15.86■□□□□ 0.13
CLCNKA-203ENST00000439316 PYCR2Q96C36 320 aa15.86■□□□□ 0.13
CLCNKA-203ENST00000439316 HIST1H2AHQ96KK5 128 aa15.86■□□□□ 0.13
CLCNKA-203ENST00000439316 MAGEB10Q96LZ2 347 aaPredicted RBP15.86■□□□□ 0.13
CLCNKA-203ENST00000439316 HIST1H2AJQ99878 128 aa15.86■□□□□ 0.13
CLCNKA-203ENST00000439316 H2AFJQ9BTM1 129 aa15.86■□□□□ 0.13
CLCNKA-203ENST00000439316 EBPLQ9BY08 206 aa15.86■□□□□ 0.13
CLCNKA-203ENST00000439316 KRT84Q9NSB2 600 aa15.86■□□□□ 0.13
CLCNKA-203ENST00000439316 FAM120CQ9NX05 1096 aaKnown RBP15.86■□□□□ 0.13
CLCNKA-203ENST00000439316 SAMHD1Q9Y3Z3 626 aaKnown RBP15.86■□□□□ 0.13
CLCNKA-203ENST00000439316 GRM6O15303 877 aa15.86■□□□□ 0.13
CLCNKA-203ENST00000439316 SLC16A5O15375 505 aa15.86■□□□□ 0.13
CLCNKA-203ENST00000439316 DPM1O60762 260 aa15.86■□□□□ 0.13
CLCNKA-203ENST00000439316 CA3P07451 260 aa15.86■□□□□ 0.13
CLCNKA-203ENST00000439316 JUPP14923 745 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms