RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 TRBC1P01850 177 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 INHBBP09529 407 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 GSTM2P28161 218 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 SOX3P41225 446 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 LSM11P83369 360 aaKnown RBP eCLIP8.38□□□□□ -1.07
USP40-203ENST00000427112 CBX2Q14781 532 aaPredicted RBP8.38□□□□□ -1.07
USP40-203ENST00000427112 TCTN1Q2MV58 587 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 CXorf57Q6NSI4 855 aaKnown RBP8.38□□□□□ -1.07
USP40-203ENST00000427112 PTRH1Q86Y79 214 aaKnown RBP8.38□□□□□ -1.07
USP40-203ENST00000427112 TRIM48Q8IWZ4 208 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 SLC5A8Q8N695 610 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 ZNF740Q8NDX6 193 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 OR5K1Q8NHB7 308 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 TP53INP1Q96A56 240 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 CEP19Q96LK0 163 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 ZNF641Q96N77 438 aaPredicted RBP8.38□□□□□ -1.07
USP40-203ENST00000427112 OR5M11Q96RB7 305 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 NIPSNAP1Q9BPW8 284 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 CCM2Q9BSQ5 444 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 IMPAD1Q9NX62 359 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 FZD4Q9ULV1 537 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 GMEB1Q9Y692 573 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 SCN3AQ9NY46 2000 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 MYO16Q9Y6X6 1858 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 ZNF840PA6NDX5 716 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 CNOT3O75175 753 aaKnown RBP8.38□□□□□ -1.07
USP40-203ENST00000427112 KRT6AP02538 564 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 KRT6BP04259 564 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 FABP3P05413 133 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 ANXA5P08758 320 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 UMPSP11172 480 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 CD6P30203 668 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 PTGER3P43115 390 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 KRT6CP48668 564 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 ALDH7A1P49419 539 aaKnown RBP8.38□□□□□ -1.07
USP40-203ENST00000427112 PRKAG1P54619 331 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 YBEYP58557 167 aaPredicted RBP8.38□□□□□ -1.07
USP40-203ENST00000427112 TLE2Q04725 743 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 CACNG1Q06432 222 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 ACSM2AQ08AH3 577 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 ZNF846Q147U1 533 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 DGUOKQ16854 277 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 DGKKQ5KSL6 1271 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 CPZQ66K79 652 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 ACSM2BQ68CK6 577 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 DESI1Q6ICB0 168 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 PAQR6Q6TCH4 344 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 ABI3BPQ7Z7G0 1075 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 TMPRSS11BQ86T26 416 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 BBS7Q8IWZ6 715 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 GPR65Q8IYL9 337 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 KCNJ9Q92806 393 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 EHD1Q9H4M9 534 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 DCAF13Q9NV06 445 aaKnown RBP8.38□□□□□ -1.07
USP40-203ENST00000427112 RNF186Q9NXI6 227 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 DNAJC27Q9NZQ0 273 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 PTBP2Q9UKA9 531 aaKnown RBP8.38□□□□□ -1.07
USP40-203ENST00000427112 DUSP12Q9UNI6 340 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 PCDHGA4Q9Y5G9 962 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 ANKRD36A6QL64 1941 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 MAGEB17A8MXT2 336 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 H0YJX3 145 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 H3BN98 237 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 GFRA2O00451 464 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 KDELR3O43731 214 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 EPN2O95208 641 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 ESR1P03372 595 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 PEPDP12955 493 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 EPORP19235 508 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 DGKAP23743 735 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 PRIM2P49643 509 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 TMBIM6P55061 237 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 TIGD6Q17RP2 521 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 RNASE12Q5GAN4 147 aaKnown RBP8.37□□□□□ -1.07
USP40-203ENST00000427112 STEAP3Q658P3 488 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 IQCF1Q8N6M8 205 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 ISG20Q96AZ6 181 aaKnown RBP8.37□□□□□ -1.07
USP40-203ENST00000427112 TTYH2Q9BSA4 534 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 MAGEH1Q9H213 219 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 ATAD3AQ9NVI7 634 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 THG1LQ9NWX6 298 aaKnown RBP8.37□□□□□ -1.07
USP40-203ENST00000427112 NUDT4Q9NZJ9 180 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 CFAP97Q9P2B7 532 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 CFAP54Q96N23 3096 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 MGAT4DA6NG13 374 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 GLOD5A6NK44 160 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 PCDH17O14917 1159 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 PTHP01270 115 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 PRR35P0CG20 571 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 PDHA2P29803 388 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 ETV3P41162 512 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 CTSKP43235 329 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 ABHD18Q0P651 414 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 B3GLCTQ6Y288 498 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 LIN28BQ6ZN17 250 aaKnown RBP eCLIP8.37□□□□□ -1.07
USP40-203ENST00000427112 GLCCI1Q86VQ1 547 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 DEPDC4Q8N2C3 294 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 CAMKK1Q8N5S9 505 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 UBASH3BQ8TF42 649 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 TRUB1Q8WWH5 349 aaKnown RBP8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms