RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 SLC12A4Q9UP95 1085 aa16.46■□□□□ 0.23
CCDC28B-202ENST00000421922 SNRNP200O75643 2136 aaKnown RBP16.46■□□□□ 0.23
CCDC28B-202ENST00000421922 PCDH15Q96QU1 1955 aa16.46■□□□□ 0.22
CCDC28B-202ENST00000421922 RALGAPA1Q6GYQ0 2036 aa16.46■□□□□ 0.22
CCDC28B-202ENST00000421922 A0A0J9YY10 115 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 SERTM1A2A2V5 107 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 OR1F1O43749 312 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 SEC22BO75396 215 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 RSL1D1O76021 490 aaKnown RBP16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 MAPK1P28482 360 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 EPHA4P54764 986 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 RPL38P63173 70 aaKnown RBP16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 CSNK1G2P78368 415 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 HMGCS1Q01581 520 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 UBAP2LQ14157 1087 aaKnown RBP16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 NR0B2Q15466 257 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 CCDC6Q16204 474 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 AP5B1Q2VPB7 878 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 INAVAQ3KP66 663 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 TMEM198Q66K66 360 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 C6orf89Q6UWU4 347 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 FAM129CQ86XR2 697 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 SLC35F3Q8IY50 421 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 OR6C4Q8NGE1 309 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 OR2T11Q8NH01 316 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 OR4C6Q8NH72 309 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 HUS1BQ8NHY5 278 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 WDR20Q8TBZ3 569 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 SAP25Q8TEE9 199 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 PRRX2Q99811 253 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 CENPKQ9BS16 269 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 ACPTQ9BZG2 426 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 NT5DC2Q9H857 520 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 IL21RQ9HBE5 538 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 SLC6A20Q9NP91 592 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 SAR1AQ9NR31 198 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 EVA1BQ9NVM1 165 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 C1orf109Q9NX04 203 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 ARMCX1Q9P291 453 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 ANKMY1Q9P2S6 941 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 GIMAP2Q9UG22 337 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 EIF3LQ9Y262 564 aaKnown RBP16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 RNF215Q9Y6U7 377 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 SPTBN4Q9H254 2564 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 GOLGA4Q13439 2230 aaKnown RBP16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 PTPRZ1P23471 2315 aaPredicted RBP16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 TRBC2A0A5B9 178 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 LSM1O15116 133 aaKnown RBP16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 NUDT21O43809 227 aaKnown RBP16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 GFRA3O60609 400 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 MYO1DO94832 1006 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 IDO1P14902 403 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 GLB1P16278 677 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 ENGP17813 658 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 PIK3CBP42338 1070 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 CAPZBP47756 277 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 GSTA3Q16772 222 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 SMU1Q2TAY7 513 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 CACHD1Q5VU97 1274 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 KIAA1614Q5VZ46 1190 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 OGFOD2Q6N063 350 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 IRGCQ6NXR0 463 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 Q6ZSR9 355 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 TRIM73Q86UV7 250 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 FAM20CQ8IXL6 584 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 OR4K1Q8NGD4 311 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 RSC1A1Q92681 617 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 CMTM7Q96FZ5 175 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 OR2A14Q96R47 310 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 SERPINI1Q99574 410 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 TUBB6Q9BUF5 446 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 C1orf50Q9BV19 199 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 SPNS1Q9H2V7 528 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 EPB41L1Q9H4G0 881 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 DMRT3Q9NQL9 472 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 NOP53Q9NZM5 478 aaKnown RBP16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 VPS29Q9UBQ0 182 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 PADI4Q9UM07 663 aa16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 POLR3HQ9Y535 204 aaPredicted RBP16.45■□□□□ 0.22
CCDC28B-202ENST00000421922 FEZF1A0PJY2 475 aa16.44■□□□□ 0.22
CCDC28B-202ENST00000421922 FOXE1O00358 373 aaPredicted RBP16.44■□□□□ 0.22
CCDC28B-202ENST00000421922 SLC22A2O15244 555 aa16.44■□□□□ 0.22
CCDC28B-202ENST00000421922 DUX1O43812 170 aa16.44■□□□□ 0.22
CCDC28B-202ENST00000421922 UBOX5O94941 541 aa16.44■□□□□ 0.22
CCDC28B-202ENST00000421922 SERPIND1P05546 499 aa16.44■□□□□ 0.22
CCDC28B-202ENST00000421922 CDH3P22223 829 aa16.44■□□□□ 0.22
CCDC28B-202ENST00000421922 GSTM2P28161 218 aa16.44■□□□□ 0.22
CCDC28B-202ENST00000421922 ALDH4A1P30038 563 aa16.44■□□□□ 0.22
CCDC28B-202ENST00000421922 ATP4BP51164 291 aa16.44■□□□□ 0.22
CCDC28B-202ENST00000421922 RPS13P62277 151 aaKnown RBP16.44■□□□□ 0.22
CCDC28B-202ENST00000421922 YBX1P67809 324 aaKnown RBP16.44■□□□□ 0.22
CCDC28B-202ENST00000421922 ACSM2AQ08AH3 577 aa16.44■□□□□ 0.22
CCDC28B-202ENST00000421922 SUZ12Q15022 739 aaKnown RBP16.44■□□□□ 0.22
CCDC28B-202ENST00000421922 C6orf136Q5SQH8 315 aa16.44■□□□□ 0.22
CCDC28B-202ENST00000421922 ACSM2BQ68CK6 577 aa16.44■□□□□ 0.22
CCDC28B-202ENST00000421922 CHSY3Q70JA7 882 aa16.44■□□□□ 0.22
CCDC28B-202ENST00000421922 ZFAND4Q86XD8 727 aa16.44■□□□□ 0.22
CCDC28B-202ENST00000421922 PARP9Q8IXQ6 854 aa16.44■□□□□ 0.22
CCDC28B-202ENST00000421922 ZNF740Q8NDX6 193 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms