RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 BTBD16Q32M84 506 aa7.66□□□□□ -1.18
VIM-202ENST00000421459 MINDY4Q4G0A6 757 aa7.66□□□□□ -1.18
VIM-202ENST00000421459 ANKRD20A4Q4UJ75 823 aa7.66□□□□□ -1.18
VIM-202ENST00000421459 MFSD4BQ5TF39 518 aa7.66□□□□□ -1.18
VIM-202ENST00000421459 ICE2Q659A1 982 aa7.66□□□□□ -1.18
VIM-202ENST00000421459 TUBA3EQ6PEY2 450 aa7.66□□□□□ -1.18
VIM-202ENST00000421459 RIPOR1Q6ZS17 1223 aa7.66□□□□□ -1.18
VIM-202ENST00000421459 GDF7Q7Z4P5 450 aa7.66□□□□□ -1.18
VIM-202ENST00000421459 VN1R4Q7Z5H5 301 aa7.66□□□□□ -1.18
VIM-202ENST00000421459 SLC13A5Q86YT5 568 aaPredicted RBP7.66□□□□□ -1.18
VIM-202ENST00000421459 REXO1L1PQ8IX06 675 aa7.66□□□□□ -1.18
VIM-202ENST00000421459 MPP5Q8N3R9 675 aa7.66□□□□□ -1.18
VIM-202ENST00000421459 ZNF808Q8N4W9 903 aaPredicted RBP7.66□□□□□ -1.18
VIM-202ENST00000421459 CCDC89Q8N998 374 aa7.66□□□□□ -1.18
VIM-202ENST00000421459 DNAJB8Q8NHS0 232 aa7.66□□□□□ -1.18
VIM-202ENST00000421459 GIMAP7Q8NHV1 300 aa7.66□□□□□ -1.18
VIM-202ENST00000421459 ZNF480Q8WV37 535 aa7.66□□□□□ -1.18
VIM-202ENST00000421459 CALR3Q96L12 384 aaKnown RBP7.66□□□□□ -1.18
VIM-202ENST00000421459 PRAP1Q96NZ9 151 aa7.66□□□□□ -1.18
VIM-202ENST00000421459 RBCK1Q9BYM8 510 aa7.66□□□□□ -1.18
VIM-202ENST00000421459 DRC3Q9H069 523 aa7.66□□□□□ -1.18
VIM-202ENST00000421459 MKKSQ9NPJ1 570 aaPredicted RBP7.66□□□□□ -1.18
VIM-202ENST00000421459 HCN3Q9P1Z3 774 aa7.66□□□□□ -1.18
VIM-202ENST00000421459 PAK5Q9P286 719 aa7.66□□□□□ -1.18
VIM-202ENST00000421459 CDC14AQ9UNH5 594 aa7.66□□□□□ -1.18
VIM-202ENST00000421459 SH2B3Q9UQQ2 575 aa7.66□□□□□ -1.18
VIM-202ENST00000421459 ANKRD17O75179 2603 aaKnown RBP7.66□□□□□ -1.18
VIM-202ENST00000421459 DOCK10Q96BY6 2186 aa7.66□□□□□ -1.18
VIM-202ENST00000421459 FEZF1A0PJY2 475 aa7.65□□□□□ -1.18
VIM-202ENST00000421459 ZNF860A6NHJ4 632 aa7.65□□□□□ -1.18
VIM-202ENST00000421459 E7ENX8 843 aa7.65□□□□□ -1.18
VIM-202ENST00000421459 NPIPA5E9PKD4 350 aa7.65□□□□□ -1.18
VIM-202ENST00000421459 SMAPO00193 183 aa7.65□□□□□ -1.18
VIM-202ENST00000421459 KPNA5O15131 536 aa7.65□□□□□ -1.18
VIM-202ENST00000421459 VPS26AO75436 327 aa7.65□□□□□ -1.18
VIM-202ENST00000421459 CDC123O75794 336 aaPredicted RBP7.65□□□□□ -1.18
VIM-202ENST00000421459 KRT38O76015 456 aa7.65□□□□□ -1.18
VIM-202ENST00000421459 B3GALT4O96024 378 aa7.65□□□□□ -1.18
VIM-202ENST00000421459 ESRRAP11474 423 aaPredicted RBP7.65□□□□□ -1.18
VIM-202ENST00000421459 IL1RNP18510 177 aa7.65□□□□□ -1.18
VIM-202ENST00000421459 FDXRP22570 491 aa7.65□□□□□ -1.18
VIM-202ENST00000421459 EMP3P54852 163 aa7.65□□□□□ -1.18
VIM-202ENST00000421459 BASP1P80723 227 aaKnown RBP7.65□□□□□ -1.18
VIM-202ENST00000421459 TAP2Q03519 686 aa7.65□□□□□ -1.18
VIM-202ENST00000421459 KIF5AQ12840 1032 aa7.65□□□□□ -1.18
VIM-202ENST00000421459 INAQ16352 499 aa7.65□□□□□ -1.18
VIM-202ENST00000421459 ACER2Q5QJU3 275 aa7.65□□□□□ -1.18
VIM-202ENST00000421459 ZNF468Q5VIY5 522 aaPredicted RBP7.65□□□□□ -1.18
VIM-202ENST00000421459 ZNF549Q6P9A3 640 aa7.65□□□□□ -1.18
VIM-202ENST00000421459 CYHR1Q6ZMK1 362 aa7.65□□□□□ -1.18
VIM-202ENST00000421459 CENPUQ71F23 418 aa7.65□□□□□ -1.18
VIM-202ENST00000421459 CPEB2Q7Z5Q1 589 aaKnown RBP7.65□□□□□ -1.18
VIM-202ENST00000421459 PNPLA5Q7Z6Z6 429 aaPredicted RBP7.65□□□□□ -1.18
VIM-202ENST00000421459 ANKRD37Q7Z713 158 aa7.65□□□□□ -1.18
VIM-202ENST00000421459 SDCCAG8Q86SQ7 713 aaPredicted RBP7.65□□□□□ -1.18
VIM-202ENST00000421459 LRRC6Q86X45 466 aa7.65□□□□□ -1.18
VIM-202ENST00000421459 PDSS2Q86YH6 399 aa7.65□□□□□ -1.18
VIM-202ENST00000421459 CRLF3Q8IUI8 442 aa7.65□□□□□ -1.18
VIM-202ENST00000421459 LRRC56Q8IYG6 542 aaPredicted RBP7.65□□□□□ -1.18
VIM-202ENST00000421459 SYCE1Q8N0S2 351 aa7.65□□□□□ -1.18
VIM-202ENST00000421459 OR51Q1Q8NH59 317 aa7.65□□□□□ -1.18
VIM-202ENST00000421459 SUN3Q8TAQ9 357 aa7.65□□□□□ -1.18
VIM-202ENST00000421459 ZCCHC10Q8TBK6 192 aa7.65□□□□□ -1.18
VIM-202ENST00000421459 MAGEC3Q8TD91 643 aa7.65□□□□□ -1.18
VIM-202ENST00000421459 PEX13Q92968 403 aa7.65□□□□□ -1.18
VIM-202ENST00000421459 RERGQ96A58 199 aaPredicted RBP7.65□□□□□ -1.18
VIM-202ENST00000421459 DNHD1Q96M86 4753 aa7.65□□□□□ -1.18
VIM-202ENST00000421459 BAG1Q99933 345 aaPredicted RBP7.65□□□□□ -1.18
VIM-202ENST00000421459 TUBB6Q9BUF5 446 aa7.65□□□□□ -1.18
VIM-202ENST00000421459 KIFC1Q9BW19 673 aa7.65□□□□□ -1.18
VIM-202ENST00000421459 RBSNQ9H1K0 784 aa7.65□□□□□ -1.18
VIM-202ENST00000421459 RUBCNLQ9H714 662 aa7.65□□□□□ -1.18
VIM-202ENST00000421459 KCNK13Q9HB14 408 aa7.65□□□□□ -1.18
VIM-202ENST00000421459 FBXO6Q9NRD1 293 aaPredicted RBP7.65□□□□□ -1.18
VIM-202ENST00000421459 C14orf105Q9NVL8 296 aa7.65□□□□□ -1.18
VIM-202ENST00000421459 NPIPA1Q9UND3 350 aa7.65□□□□□ -1.18
VIM-202ENST00000421459 MED16Q9Y2X0 877 aa7.65□□□□□ -1.18
VIM-202ENST00000421459 PRPF4O43172 522 aaKnown RBP eCLIP7.64□□□□□ -1.19
VIM-202ENST00000421459 LCMT2O60294 686 aaKnown RBP7.64□□□□□ -1.19
VIM-202ENST00000421459 RDH16O75452 317 aa7.64□□□□□ -1.19
VIM-202ENST00000421459 CATP04040 527 aaKnown RBP7.64□□□□□ -1.19
VIM-202ENST00000421459 ICAM2P13598 275 aa7.64□□□□□ -1.19
VIM-202ENST00000421459 PKMP14618 531 aaKnown RBP7.64□□□□□ -1.19
VIM-202ENST00000421459 EZRP15311 586 aaKnown RBP7.64□□□□□ -1.19
VIM-202ENST00000421459 IMPA1P29218 277 aa7.64□□□□□ -1.19
VIM-202ENST00000421459 PTGER4P35408 488 aa7.64□□□□□ -1.19
VIM-202ENST00000421459 COILP38432 576 aaPredicted RBP7.64□□□□□ -1.19
VIM-202ENST00000421459 XCR1P46094 333 aa7.64□□□□□ -1.19
VIM-202ENST00000421459 AVPR1BP47901 424 aa7.64□□□□□ -1.19
VIM-202ENST00000421459 NPY2RP49146 381 aa7.64□□□□□ -1.19
VIM-202ENST00000421459 CLCN7P51798 805 aa7.64□□□□□ -1.19
VIM-202ENST00000421459 NR0B1P51843 470 aaKnown RBP7.64□□□□□ -1.19
VIM-202ENST00000421459 RBPJQ06330 500 aa7.64□□□□□ -1.19
VIM-202ENST00000421459 CTBP1Q13363 440 aa7.64□□□□□ -1.19
VIM-202ENST00000421459 OR1C1Q15619 314 aa7.64□□□□□ -1.19
VIM-202ENST00000421459 TYSND1Q2T9J0 566 aa7.64□□□□□ -1.19
VIM-202ENST00000421459 RNFT1Q5M7Z0 435 aa7.64□□□□□ -1.19
VIM-202ENST00000421459 SEL1L2Q5TEA6 688 aa7.64□□□□□ -1.19
VIM-202ENST00000421459 THEMIS2Q5TEJ8 643 aa7.64□□□□□ -1.19
VIM-202ENST00000421459 GARNL3Q5VVW2 1013 aa7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms