RNA–Protein interactions for RNA: ENST00000407422.7

SMARCB1-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMARCB1, Length 1,643 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-204ENST00000407422 YIPF2Q9BWQ6 316 aa18.34■□□□□ 0.53
SMARCB1-204ENST00000407422 MAP10Q9P2G4 905 aa18.34■□□□□ 0.53
SMARCB1-204ENST00000407422 CDC14AQ9UNH5 594 aa18.34■□□□□ 0.53
SMARCB1-204ENST00000407422 MRPS2Q9Y399 296 aaKnown RBP18.34■□□□□ 0.53
SMARCB1-204ENST00000407422 CSAG2Q9Y5P2 127 aa18.34■□□□□ 0.53
SMARCB1-204ENST00000407422 TCP11X1B4DZS4 312 aa18.33■□□□□ 0.52
SMARCB1-204ENST00000407422 IPO13O94829 963 aaKnown RBP18.33■□□□□ 0.52
SMARCB1-204ENST00000407422 SEC31AO94979 1220 aaKnown RBP18.33■□□□□ 0.52
SMARCB1-204ENST00000407422 SYT16Q17RD7 645 aa18.33■□□□□ 0.52
SMARCB1-204ENST00000407422 ZXDCQ2QGD7 858 aaPredicted RBP18.33■□□□□ 0.52
SMARCB1-204ENST00000407422 GARNL3Q5VVW2 1013 aa18.33■□□□□ 0.52
SMARCB1-204ENST00000407422 AGTRAPQ6RW13 159 aa18.33■□□□□ 0.52
SMARCB1-204ENST00000407422 GALNT7Q86SF2 657 aa18.33■□□□□ 0.52
SMARCB1-204ENST00000407422 ANKMY2Q8IV38 441 aa18.33■□□□□ 0.52
SMARCB1-204ENST00000407422 GPATCH11Q8N954 259 aa18.33■□□□□ 0.52
SMARCB1-204ENST00000407422 ALKBH8Q96BT7 664 aaKnown RBP18.33■□□□□ 0.52
SMARCB1-204ENST00000407422 MACROD1Q9BQ69 325 aa18.33■□□□□ 0.52
SMARCB1-204ENST00000407422 DRC3Q9H069 523 aa18.33■□□□□ 0.52
SMARCB1-204ENST00000407422 TMEM184CQ9NVA4 438 aa18.33■□□□□ 0.52
SMARCB1-204ENST00000407422 KLHL41O60662 606 aa18.32■□□□□ 0.52
SMARCB1-204ENST00000407422 MRPS25P82663 173 aaKnown RBP18.32■□□□□ 0.52
SMARCB1-204ENST00000407422 MAT1AQ00266 395 aaKnown RBP18.32■□□□□ 0.52
SMARCB1-204ENST00000407422 SP140Q13342 867 aa18.32■□□□□ 0.52
SMARCB1-204ENST00000407422 NAE1Q13564 534 aa18.32■□□□□ 0.52
SMARCB1-204ENST00000407422 HECTD2Q5U5R9 776 aa18.32■□□□□ 0.52
SMARCB1-204ENST00000407422 ATG9BQ674R7 924 aa18.32■□□□□ 0.52
SMARCB1-204ENST00000407422 STEAP4Q687X5 459 aa18.32■□□□□ 0.52
SMARCB1-204ENST00000407422 VN1R4Q7Z5H5 301 aa18.32■□□□□ 0.52
SMARCB1-204ENST00000407422 PALM2Q8IXS6 379 aa18.32■□□□□ 0.52
SMARCB1-204ENST00000407422 SHISA5Q8N114 240 aa18.32■□□□□ 0.52
SMARCB1-204ENST00000407422 ZADH2Q8N4Q0 377 aa18.32■□□□□ 0.52
SMARCB1-204ENST00000407422 CISD2Q8N5K1 135 aaKnown RBP18.32■□□□□ 0.52
SMARCB1-204ENST00000407422 SNRNP40Q96DI7 357 aaKnown RBP18.32■□□□□ 0.52
SMARCB1-204ENST00000407422 RUNDC3BQ96NL0 473 aa18.32■□□□□ 0.52
SMARCB1-204ENST00000407422 OLFM1Q99784 485 aa18.32■□□□□ 0.52
SMARCB1-204ENST00000407422 ZNF160Q9HCG1 818 aa18.32■□□□□ 0.52
SMARCB1-204ENST00000407422 ICE1Q9Y2F5 2266 aa18.32■□□□□ 0.52
SMARCB1-204ENST00000407422 IDSB3KWA1 339 aa18.31■□□□□ 0.52
SMARCB1-204ENST00000407422 TXNDC9O14530 226 aa18.31■□□□□ 0.52
SMARCB1-204ENST00000407422 SLC16A5O15375 505 aa18.31■□□□□ 0.52
SMARCB1-204ENST00000407422 ACPPP15309 386 aa18.31■□□□□ 0.52
SMARCB1-204ENST00000407422 IL2P60568 153 aa18.31■□□□□ 0.52
SMARCB1-204ENST00000407422 CSNK1G2P78368 415 aa18.31■□□□□ 0.52
SMARCB1-204ENST00000407422 PDAP1Q13442 181 aaKnown RBP18.31■□□□□ 0.52
SMARCB1-204ENST00000407422 FASTKD3Q14CZ7 662 aaKnown RBP18.31■□□□□ 0.52
SMARCB1-204ENST00000407422 AGAP7PQ5VUJ5 663 aa18.31■□□□□ 0.52
SMARCB1-204ENST00000407422 CUZD1Q86UP6 607 aa18.31■□□□□ 0.52
SMARCB1-204ENST00000407422 IQCKQ8N0W5 287 aa18.31■□□□□ 0.52
SMARCB1-204ENST00000407422 TM9SF4Q92544 642 aa18.31■□□□□ 0.52
SMARCB1-204ENST00000407422 SNF8Q96H20 258 aa18.31■□□□□ 0.52
SMARCB1-204ENST00000407422 THOC3Q96J01 351 aaKnown RBP18.31■□□□□ 0.52
SMARCB1-204ENST00000407422 AGAP4Q96P64 663 aa18.31■□□□□ 0.52
SMARCB1-204ENST00000407422 LHPPQ9H008 270 aa18.31■□□□□ 0.52
SMARCB1-204ENST00000407422 ILKAPQ9H0C8 392 aaPredicted RBP18.31■□□□□ 0.52
SMARCB1-204ENST00000407422 VWA7Q9Y334 891 aa18.31■□□□□ 0.52
SMARCB1-204ENST00000407422 PSAT1Q9Y617 370 aa18.31■□□□□ 0.52
SMARCB1-204ENST00000407422 FEZF1A0PJY2 475 aa18.31■□□□□ 0.52
SMARCB1-204ENST00000407422 ANXA5P08758 320 aa18.31■□□□□ 0.52
SMARCB1-204ENST00000407422 FDXRP22570 491 aa18.31■□□□□ 0.52
SMARCB1-204ENST00000407422 EFNA3P52797 238 aa18.31■□□□□ 0.52
SMARCB1-204ENST00000407422 EMP2P54851 167 aa18.31■□□□□ 0.52
SMARCB1-204ENST00000407422 ARL4CP56559 192 aa18.31■□□□□ 0.52
SMARCB1-204ENST00000407422 MRPL49Q13405 166 aaKnown RBP18.31■□□□□ 0.52
SMARCB1-204ENST00000407422 FAAH2Q6GMR7 532 aa18.31■□□□□ 0.52
SMARCB1-204ENST00000407422 Q6ZS92 163 aa18.31■□□□□ 0.52
SMARCB1-204ENST00000407422 PRSS41Q7RTY9 318 aa18.31■□□□□ 0.52
SMARCB1-204ENST00000407422 OR9A4Q8NGU2 314 aa18.31■□□□□ 0.52
SMARCB1-204ENST00000407422 ANP32BQ92688 251 aaKnown RBP18.31■□□□□ 0.52
SMARCB1-204ENST00000407422 PYCR2Q96C36 320 aa18.31■□□□□ 0.52
SMARCB1-204ENST00000407422 LRRC39Q96DD0 335 aa18.31■□□□□ 0.52
SMARCB1-204ENST00000407422 KRT12Q99456 494 aa18.31■□□□□ 0.52
SMARCB1-204ENST00000407422 SGPP1Q9BX95 441 aa18.31■□□□□ 0.52
SMARCB1-204ENST00000407422 PCBD2Q9H0N5 130 aa18.31■□□□□ 0.52
SMARCB1-204ENST00000407422 ASF1BQ9NVP2 202 aa18.31■□□□□ 0.52
SMARCB1-204ENST00000407422 IKZF3Q9UKT9 509 aa18.31■□□□□ 0.52
SMARCB1-204ENST00000407422 KCNE1BA0A087WTH5 132 aa18.3■□□□□ 0.52
SMARCB1-204ENST00000407422 EFCAB8A8MWE9 144 aa18.3■□□□□ 0.52
SMARCB1-204ENST00000407422 CCDC188H7C350 402 aa18.3■□□□□ 0.52
SMARCB1-204ENST00000407422 MAP2K7O14733 419 aa18.3■□□□□ 0.52
SMARCB1-204ENST00000407422 PRPF4O43172 522 aaKnown RBP eCLIP18.3■□□□□ 0.52
SMARCB1-204ENST00000407422 HPP00738 406 aa18.3■□□□□ 0.52
SMARCB1-204ENST00000407422 COX6A1P12074 109 aa18.3■□□□□ 0.52
SMARCB1-204ENST00000407422 NPPBP16860 134 aa18.3■□□□□ 0.52
SMARCB1-204ENST00000407422 HRH2P25021 359 aa18.3■□□□□ 0.52
SMARCB1-204ENST00000407422 PAFAH1B1P43034 410 aa18.3■□□□□ 0.52
SMARCB1-204ENST00000407422 RPL21P46778 160 aaKnown RBP18.3■□□□□ 0.52
SMARCB1-204ENST00000407422 RPS15AP62244 130 aaKnown RBP18.3■□□□□ 0.52
SMARCB1-204ENST00000407422 PDIA2Q13087 525 aaKnown RBP18.3■□□□□ 0.52
SMARCB1-204ENST00000407422 FAM53BQ14153 422 aa18.3■□□□□ 0.52
SMARCB1-204ENST00000407422 IRAK1BP1Q5VVH5 260 aa18.3■□□□□ 0.52
SMARCB1-204ENST00000407422 TMEM207Q6UWW9 146 aa18.3■□□□□ 0.52
SMARCB1-204ENST00000407422 C17orf64Q86WR6 236 aa18.3■□□□□ 0.52
SMARCB1-204ENST00000407422 ZC3H7AQ8IWR0 971 aaKnown RBP18.3■□□□□ 0.52
SMARCB1-204ENST00000407422 AMER2Q8N7J2 671 aa18.3■□□□□ 0.52
SMARCB1-204ENST00000407422 VPS50Q96JG6 964 aa18.3■□□□□ 0.52
SMARCB1-204ENST00000407422 TGIF2Q9GZN2 237 aa18.3■□□□□ 0.52
SMARCB1-204ENST00000407422 MKKSQ9NPJ1 570 aaPredicted RBP18.3■□□□□ 0.52
SMARCB1-204ENST00000407422 ARL15Q9NXU5 204 aa18.3■□□□□ 0.52
SMARCB1-204ENST00000407422 SNX24Q9Y343 169 aa18.3■□□□□ 0.52
SMARCB1-204ENST00000407422 LCMT2O60294 686 aaKnown RBP18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms