RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 YAE1D1Q9NRH1 226 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 FAM207AQ9NSI2 230 aaPredicted RBP3.92□□□□□ -1.78
HMGB1-204ENST00000399489 ASNSD1Q9NWL6 643 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 SEMA5BQ9P283 1151 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 THEGQ9P2T0 379 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 ATXN10Q9UBB4 475 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 AMFRQ9UKV5 643 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 FZD4Q9ULV1 537 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 KCNJ14Q9UNX9 436 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 ERVK-11Q9UQG0 969 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 NIP7Q9Y221 180 aaKnown RBP eCLIP3.92□□□□□ -1.78
HMGB1-204ENST00000399489 SF3B1O75533 1304 aaKnown RBP eCLIP3.91□□□□□ -1.784e-8■■□□□ 13.3
HMGB1-204ENST00000399489 ILVBLA1L0T0 632 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 HELTA6NFD8 242 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 TMEM221A6NGB7 291 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 TARM1B6A8C7 271 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 GOLGA8SH3BPF8 625 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 WRBO00258 174 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 PRAF2O60831 178 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 DNAJB6O75190 326 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 SNNO75324 88 aaPredicted RBP3.91□□□□□ -1.78
HMGB1-204ENST00000399489 ATP6V1G1O75348 118 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 LUC7L3O95232 432 aaKnown RBP3.91□□□□□ -1.78
HMGB1-204ENST00000399489 POP4O95707 220 aaKnown RBP3.91□□□□□ -1.78
HMGB1-204ENST00000399489 C9P02748 559 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 CSN3P07498 182 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 ZCCHC18P0CG32 403 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 YWHAQP27348 245 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 HOXC9P31274 260 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 ADRA1AP35348 466 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 MAGEA1P43355 309 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 CDKN1BP46527 198 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 NR2C2P49116 596 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 PLCD1P51178 756 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 CYP2J2P51589 502 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 CLCN5P51795 746 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 MTCP1P56278 107 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 PSG6Q00889 435 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 CFHR1Q03591 330 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 FUT7Q11130 342 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 BNIP1Q12981 228 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 MELKQ14680 651 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 SYT16Q17RD7 645 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 C2orf68Q2NKX9 166 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 PLK5Q496M5 336 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 CERKLQ49MI3 558 aaPredicted RBP3.91□□□□□ -1.78
HMGB1-204ENST00000399489 SYTL3Q4VX76 610 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 TMEM63BQ5T3F8 832 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 ZNF618Q5T7W0 954 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 DENND2CQ68D51 928 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 AAGABQ6PD74 315 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 BTNL8Q6UX41 500 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 PAQR9Q6ZVX9 377 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 LINGO2Q7L985 606 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 SLC29A4Q7RTT9 530 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 PHLDB2Q86SQ0 1253 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 ZC3HC1Q86WB0 502 aaKnown RBP3.91□□□□□ -1.78
HMGB1-204ENST00000399489 OR52N4Q8NGI2 321 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 FAM76AQ8TAV0 307 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 TBC1D16Q8TBP0 767 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 ATOH1Q92858 354 aaPredicted RBP3.91□□□□□ -1.78
HMGB1-204ENST00000399489 MOB3AQ96BX8 217 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 RHBDF1Q96CC6 855 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 ORAI1Q96D31 301 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 LRRC39Q96DD0 335 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 MAGED4Q96JG8 741 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 C4orf36Q96KX1 117 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 SENP8Q96LD8 212 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 FCRL4Q96PJ5 515 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 RIOK1Q9BRS2 568 aaKnown RBP3.91□□□□□ -1.78
HMGB1-204ENST00000399489 CDK19Q9BWU1 502 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 MAGIXQ9H6Y5 334 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 WDR6Q9NNW5 1121 aaKnown RBP3.91□□□□□ -1.78
HMGB1-204ENST00000399489 DPP3Q9NY33 737 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 SPATA7Q9P0W8 599 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 ADAM21Q9UKJ8 722 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 ABT1Q9ULW3 272 aaKnown RBP3.91□□□□□ -1.78
HMGB1-204ENST00000399489 STK38LQ9Y2H1 464 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 PADI2Q9Y2J8 665 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 SH3GLB1Q9Y371 365 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 MST1RQ04912 1400 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 EIF4G3O43432 1585 aaKnown RBP3.91□□□□□ -1.78
HMGB1-204ENST00000399489 HEG1Q9ULI3 1381 aa3.91□□□□□ -1.78
HMGB1-204ENST00000399489 GAKO14976 1311 aa3.9□□□□□ -1.78
HMGB1-204ENST00000399489 AQRO60306 1485 aaKnown RBP eCLIP3.9□□□□□ -1.782e-9■■■■□ 24.4
HMGB1-204ENST00000399489 A0A087X0K7 114 aa3.9□□□□□ -1.78
HMGB1-204ENST00000399489 A0A1B0GTQ1 180 aa3.9□□□□□ -1.78
HMGB1-204ENST00000399489 A0A1W2PPW3 197 aa3.9□□□□□ -1.78
HMGB1-204ENST00000399489 TMEM129A0AVI4 362 aa3.9□□□□□ -1.78
HMGB1-204ENST00000399489 C4orf47A7E2U8 309 aa3.9□□□□□ -1.78
HMGB1-204ENST00000399489 HEPACAM2A8MVW5 462 aa3.9□□□□□ -1.78
HMGB1-204ENST00000399489 ZNF264O43296 627 aa3.9□□□□□ -1.78
HMGB1-204ENST00000399489 PLPP2O43688 288 aa3.9□□□□□ -1.78
HMGB1-204ENST00000399489 ECE2O60344 883 aa3.9□□□□□ -1.78
HMGB1-204ENST00000399489 RANBP6O60518 1105 aaKnown RBP3.9□□□□□ -1.78
HMGB1-204ENST00000399489 ATP2C2O75185 946 aa3.9□□□□□ -1.78
HMGB1-204ENST00000399489 IVLP07476 585 aa3.9□□□□□ -1.78
HMGB1-204ENST00000399489 ZNF24P17028 368 aa3.9□□□□□ -1.78
HMGB1-204ENST00000399489 TNNI3P19429 210 aa3.9□□□□□ -1.78
HMGB1-204ENST00000399489 NCF2P19878 526 aaPredicted RBP3.9□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms