RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 GSTT1P30711 240 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 CLRN1P58418 232 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 PTCHD3Q3KNS1 767 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 RBM20Q5T481 1227 aaKnown RBP11.03□□□□□ -0.64
TTC28-201ENST00000397906 METTL21CQ5VZV1 264 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 AGTRAPQ6RW13 159 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 UBQLNLQ8IYU4 475 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 HTRA1Q92743 480 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 CHID1Q9BWS9 393 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 KAT7O95251 611 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 LDOC1O95751 146 aaPredicted RBP11.03□□□□□ -0.64
TTC28-201ENST00000397906 IMPDH1P20839 514 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 DPYSQ14117 519 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 OR6N1Q8NGY5 312 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 SLC39A3Q9BRY0 314 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 ZNF717Q9BY31 904 aaPredicted RBP11.03□□□□□ -0.64
TTC28-201ENST00000397906 GALPQ9UBC7 116 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 COMMD3-BMI1R4GMX3 469 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 A0A0X1KG70 313 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 UNCXA6NJT0 531 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 C11orf98E9PRG8 122 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 SCELO95171 688 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 NR1H2P55055 460 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 SRYQ05066 204 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 ZNF267Q14586 743 aaPredicted RBP11.03□□□□□ -0.64
TTC28-201ENST00000397906 C7orf57Q8NEG2 295 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 S100A14Q9HCY8 104 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 EDNRAP25101 427 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 MSX1P28360 303 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 BNIP1Q12981 228 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 DCUN1D3Q8IWE4 304 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 TRIM63Q969Q1 353 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 WDR92Q96MX6 357 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 PTGES2Q9H7Z7 377 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 MAU2Q9Y6X3 613 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 CXorf49A8MYA2 514 aaPredicted RBP11.03□□□□□ -0.64
TTC28-201ENST00000397906 CBSLP0DN79 551 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 TTKP33981 857 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 CBSP35520 551 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 SERINC3Q13530 473 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 CCSAPQ6IQ19 270 aaPredicted RBP11.03□□□□□ -0.64
TTC28-201ENST00000397906 CEACAM20Q6UY09 585 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 PRR11Q96HE9 360 aaPredicted RBP11.03□□□□□ -0.64
TTC28-201ENST00000397906 KCNA7Q96RP8 456 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 GRIP1Q9Y3R0 1128 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 SYPP08247 313 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 RPS9P46781 194 aaKnown RBP11.03□□□□□ -0.64
TTC28-201ENST00000397906 ABCA11PQ4W5N1 156 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 HM13Q8TCT9 377 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 MAFFQ9ULX9 164 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 AKAP12Q02952 1782 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 FMO3P31513 532 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 DGKQP52824 942 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 SLC25A11Q02978 314 aaKnown RBP11.03□□□□□ -0.64
TTC28-201ENST00000397906 SCN1BQ07699 218 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 FAM69BQ5VUD6 431 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 NLGN4YQ8NFZ3 816 aaPredicted RBP11.03□□□□□ -0.64
TTC28-201ENST00000397906 DOK4Q8TEW6 326 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 FARSBQ9NSD9 589 aaKnown RBP11.03□□□□□ -0.64
TTC28-201ENST00000397906 CFL2Q9Y281 166 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 COL1A1P02452 1464 aaPredicted RBP11.03□□□□□ -0.64
TTC28-201ENST00000397906 CD72P21854 359 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 AZGP1P25311 298 aaKnown RBP11.03□□□□□ -0.64
TTC28-201ENST00000397906 NANOGNBQ7Z5D8 188 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 TMEM130Q8N3G9 435 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 OR2M4Q96R27 311 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 FAM83CQ9BQN1 747 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 MGME1Q9BQP7 344 aa11.03□□□□□ -0.64
TTC28-201ENST00000397906 DUX1O43812 170 aa11.02□□□□□ -0.64
TTC28-201ENST00000397906 AKAP8O43823 692 aaKnown RBP11.02□□□□□ -0.64
TTC28-201ENST00000397906 OAS1P00973 400 aaKnown RBP11.02□□□□□ -0.64
TTC28-201ENST00000397906 MLLT6P55198 1093 aaPredicted RBP11.02□□□□□ -0.64
TTC28-201ENST00000397906 ZNF676Q8N7Q3 588 aa11.02□□□□□ -0.64
TTC28-201ENST00000397906 YIPF7Q8N8F6 280 aa11.02□□□□□ -0.64
TTC28-201ENST00000397906 A0A1W2PQU0 124 aa11.02□□□□□ -0.64
TTC28-201ENST00000397906 FAM172BPA6NC97 362 aa11.02□□□□□ -0.64
TTC28-201ENST00000397906 LOC730098B7Z3J9 87 aa11.02□□□□□ -0.64
TTC28-201ENST00000397906 LCA5LO95447 670 aa11.02□□□□□ -0.64
TTC28-201ENST00000397906 CD2P06729 351 aa11.02□□□□□ -0.64
TTC28-201ENST00000397906 PRPS1L1P21108 318 aa11.02□□□□□ -0.64
TTC28-201ENST00000397906 RTP2Q5QGT7 225 aa11.02□□□□□ -0.64
TTC28-201ENST00000397906 TMEM198Q66K66 360 aa11.02□□□□□ -0.64
TTC28-201ENST00000397906 OR9A1PQ8NGU1 263 aa11.02□□□□□ -0.64
TTC28-201ENST00000397906 RPLP0P6Q8NHW5 317 aa11.02□□□□□ -0.64
TTC28-201ENST00000397906 POP5Q969H6 163 aaKnown RBP11.02□□□□□ -0.64
TTC28-201ENST00000397906 HHIPQ96QV1 700 aa11.02□□□□□ -0.64
TTC28-201ENST00000397906 SLC22A8Q8TCC7 542 aa11.02□□□□□ -0.65
TTC28-201ENST00000397906 BRF2Q9HAW0 419 aa11.02□□□□□ -0.65
TTC28-201ENST00000397906 SMPD3Q9NY59 655 aaPredicted RBP11.02□□□□□ -0.65
TTC28-201ENST00000397906 A8MT66 165 aa11.02□□□□□ -0.65
TTC28-201ENST00000397906 FCER2P06734 321 aa11.02□□□□□ -0.65
TTC28-201ENST00000397906 ABATP80404 500 aa11.02□□□□□ -0.65
TTC28-201ENST00000397906 MCFD2Q8NI22 146 aa11.02□□□□□ -0.65
TTC28-201ENST00000397906 ROPN1LQ96C74 230 aa11.02□□□□□ -0.65
TTC28-201ENST00000397906 FLRT1Q9NZU1 646 aa11.02□□□□□ -0.65
TTC28-201ENST00000397906 GRXCR2A6NFK2 248 aa11.02□□□□□ -0.65
TTC28-201ENST00000397906 HNRNPA1P09651 372 aaKnown RBP eCLIP11.02□□□□□ -0.65
TTC28-201ENST00000397906 BMPR1AP36894 532 aa11.02□□□□□ -0.65
TTC28-201ENST00000397906 TTYH2Q9BSA4 534 aa11.02□□□□□ -0.65
TTC28-201ENST00000397906 NSUN3Q9H649 340 aaKnown RBP11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms