RNA–Protein interactions for RNA: ENST00000375661.5

LSM2-208, Transcript of LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated, human

APPRIS P1 TSL 1 (best) BASIC

Gene LSM2, Length 876 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM2-208	ENST00000375661	LRRTM2	O43300	516 aa		11.64	□□□□□ -0.55
LSM2-208	ENST00000375661	CTIF	O43310	598 aa	Known RBP	11.64	□□□□□ -0.55
LSM2-208	ENST00000375661	MATN4	O95460	622 aa		11.64	□□□□□ -0.55
LSM2-208	ENST00000375661	TPBGL	P0DKB5	382 aa		11.64	□□□□□ -0.55
LSM2-208	ENST00000375661	MPC1L	P0DKB6	136 aa		11.64	□□□□□ -0.55
LSM2-208	ENST00000375661	ENO3	P13929	434 aa	Predicted RBP	11.64	□□□□□ -0.55
LSM2-208	ENST00000375661	PVR	P15151	417 aa		11.64	□□□□□ -0.55
LSM2-208	ENST00000375661	POU3F2	P20265	443 aa	Predicted RBP	11.64	□□□□□ -0.55
LSM2-208	ENST00000375661	SHMT2	P34897	504 aa		11.64	□□□□□ -0.55
LSM2-208	ENST00000375661	MSH2	P43246	934 aa		11.64	□□□□□ -0.55
LSM2-208	ENST00000375661	GABRA4	P48169	554 aa		11.64	□□□□□ -0.55
LSM2-208	ENST00000375661	POU4F1	Q01851	419 aa		11.64	□□□□□ -0.55
LSM2-208	ENST00000375661	PRKG2	Q13237	762 aa		11.64	□□□□□ -0.55
LSM2-208	ENST00000375661	PDAP1	Q13442	181 aa	Known RBP	11.64	□□□□□ -0.55
LSM2-208	ENST00000375661	GRB7	Q14451	532 aa		11.64	□□□□□ -0.55
LSM2-208	ENST00000375661	USP10	Q14694	798 aa	Known RBP	11.64	□□□□□ -0.55
LSM2-208	ENST00000375661	ZKSCAN8	Q15776	578 aa	Predicted RBP	11.64	□□□□□ -0.55
LSM2-208	ENST00000375661	TTLL9	Q3SXZ7	439 aa		11.64	□□□□□ -0.55
LSM2-208	ENST00000375661	FCRL6	Q6DN72	434 aa		11.64	□□□□□ -0.55
LSM2-208	ENST00000375661	UNC5D	Q6UXZ4	953 aa		11.64	□□□□□ -0.55
LSM2-208	ENST00000375661	NEK10	Q6ZWH5	1172 aa		11.64	□□□□□ -0.55
LSM2-208	ENST00000375661	ADGRF3	Q8IZF5	1079 aa		11.64	□□□□□ -0.55
LSM2-208	ENST00000375661	MREG	Q8N565	214 aa		11.64	□□□□□ -0.55
LSM2-208	ENST00000375661	OR5AR1	Q8NGP9	310 aa		11.64	□□□□□ -0.55
LSM2-208	ENST00000375661	CFAP61	Q8NHU2	1237 aa		11.64	□□□□□ -0.55
LSM2-208	ENST00000375661	DENND1A	Q8TEH3	1009 aa		11.64	□□□□□ -0.55
LSM2-208	ENST00000375661	EEF1AKMT1	Q8WVE0	214 aa		11.64	□□□□□ -0.55
LSM2-208	ENST00000375661	NRTN	Q99748	197 aa		11.64	□□□□□ -0.55
LSM2-208	ENST00000375661	TXLNG	Q9NUQ3	528 aa		11.64	□□□□□ -0.55
LSM2-208	ENST00000375661	ZNF180	Q9UJW8	692 aa		11.64	□□□□□ -0.55
LSM2-208	ENST00000375661	NOVA2	Q9UNW9	492 aa	Known RBP	11.64	□□□□□ -0.55
LSM2-208	ENST00000375661	ASF1A	Q9Y294	204 aa		11.64	□□□□□ -0.55
LSM2-208	ENST00000375661	EIF3F	O00303	357 aa	Predicted RBP	11.63	□□□□□ -0.55
LSM2-208	ENST00000375661	ZSCAN9	O15535	394 aa	Predicted RBP	11.63	□□□□□ -0.55
LSM2-208	ENST00000375661	PHGDH	O43175	533 aa	Known RBP	11.63	□□□□□ -0.55
LSM2-208	ENST00000375661	C1orf105	O95561	183 aa		11.63	□□□□□ -0.55
LSM2-208	ENST00000375661	UMOD	P07911	640 aa		11.63	□□□□□ -0.55
LSM2-208	ENST00000375661	INHBA	P08476	426 aa		11.63	□□□□□ -0.55
LSM2-208	ENST00000375661	ZNF37A	P17032	561 aa	Predicted RBP	11.63	□□□□□ -0.55
LSM2-208	ENST00000375661	MMP11	P24347	488 aa		11.63	□□□□□ -0.55
LSM2-208	ENST00000375661	GMPR	P36959	345 aa		11.63	□□□□□ -0.55
LSM2-208	ENST00000375661	CCSMST1	Q4G0I0	132 aa		11.63	□□□□□ -0.55
LSM2-208	ENST00000375661	NKAIN1	Q4KMZ8	207 aa		11.63	□□□□□ -0.55
LSM2-208	ENST00000375661	MROH9	Q5TGP6	573 aa		11.63	□□□□□ -0.55
LSM2-208	ENST00000375661	AGAP7P	Q5VUJ5	663 aa		11.63	□□□□□ -0.55
LSM2-208	ENST00000375661	IRAK1BP1	Q5VVH5	260 aa		11.63	□□□□□ -0.55
LSM2-208	ENST00000375661	PRAMEF13	Q5VWM6	474 aa		11.63	□□□□□ -0.55
LSM2-208	ENST00000375661	SP5	Q6BEB4	398 aa	Predicted RBP	11.63	□□□□□ -0.55
LSM2-208	ENST00000375661	RPUSD3	Q6P087	351 aa	Known RBP	11.63	□□□□□ -0.55
LSM2-208	ENST00000375661	ADGRD1	Q6QNK2	874 aa		11.63	□□□□□ -0.55
LSM2-208	ENST00000375661	PIWIL4	Q7Z3Z4	852 aa	Known RBP	11.63	□□□□□ -0.55
LSM2-208	ENST00000375661	CMC1	Q7Z7K0	106 aa		11.63	□□□□□ -0.55
LSM2-208	ENST00000375661	TBC1D21	Q8IYX1	336 aa		11.63	□□□□□ -0.55
LSM2-208	ENST00000375661	OR5K2	Q8NHB8	316 aa		11.63	□□□□□ -0.55
LSM2-208	ENST00000375661	ANKRD49	Q8WVL7	239 aa		11.63	□□□□□ -0.55
LSM2-208	ENST00000375661	FAR1	Q8WVX9	515 aa		11.63	□□□□□ -0.55
LSM2-208	ENST00000375661	FKBP10	Q96AY3	582 aa		11.63	□□□□□ -0.55
LSM2-208	ENST00000375661	VPS50	Q96JG6	964 aa		11.63	□□□□□ -0.55
LSM2-208	ENST00000375661	AGAP4	Q96P64	663 aa		11.63	□□□□□ -0.55
LSM2-208	ENST00000375661	KLHL25	Q9H0H3	589 aa		11.63	□□□□□ -0.55
LSM2-208	ENST00000375661	POPDC3	Q9HBV1	291 aa		11.63	□□□□□ -0.55
LSM2-208	ENST00000375661	ZBTB20	Q9HC78	741 aa	Predicted RBP	11.63	□□□□□ -0.55
LSM2-208	ENST00000375661	GPAM	Q9HCL2	828 aa		11.63	□□□□□ -0.55
LSM2-208	ENST00000375661	FAM60A	Q9NP50	221 aa		11.63	□□□□□ -0.55
LSM2-208	ENST00000375661	FETUB	Q9UGM5	382 aa		11.63	□□□□□ -0.55
LSM2-208	ENST00000375661	IKZF3	Q9UKT9	509 aa		11.63	□□□□□ -0.55
LSM2-208	ENST00000375661	ARHGAP10	A1A4S6	786 aa		11.62	□□□□□ -0.55
LSM2-208	ENST00000375661	ARHGEF33	A8MVX0	844 aa		11.62	□□□□□ -0.55
LSM2-208	ENST00000375661	GFY	I3L273	518 aa		11.62	□□□□□ -0.55
LSM2-208	ENST00000375661	PSIP1	O75475	530 aa	Known RBP	11.62	□□□□□ -0.55
LSM2-208	ENST00000375661	ONECUT2	O95948	504 aa		11.62	□□□□□ -0.55
LSM2-208	ENST00000375661	ALB	P02768	609 aa		11.62	□□□□□ -0.55
LSM2-208	ENST00000375661	STS	P08842	583 aa		11.62	□□□□□ -0.55
LSM2-208	ENST00000375661	PIM1	P11309	404 aa	Predicted RBP	11.62	□□□□□ -0.55
LSM2-208	ENST00000375661	UGT2B7	P16662	529 aa		11.62	□□□□□ -0.55
LSM2-208	ENST00000375661	STMN1	P16949	149 aa		11.62	□□□□□ -0.55
LSM2-208	ENST00000375661	BDKRB1	P46663	353 aa		11.62	□□□□□ -0.55
LSM2-208	ENST00000375661	RGS4	P49798	205 aa		11.62	□□□□□ -0.55
LSM2-208	ENST00000375661	SERPINB9	P50453	376 aa		11.62	□□□□□ -0.55
LSM2-208	ENST00000375661	IL2	P60568	153 aa		11.62	□□□□□ -0.55
LSM2-208	ENST00000375661	RAB10	P61026	200 aa		11.62	□□□□□ -0.55
LSM2-208	ENST00000375661	ZNF169	Q14929	603 aa	Predicted RBP	11.62	□□□□□ -0.55
LSM2-208	ENST00000375661	TLR1	Q15399	786 aa		11.62	□□□□□ -0.55
LSM2-208	ENST00000375661	EEF1AKMT2	Q5JPI9	291 aa	Known RBP	11.62	□□□□□ -0.55
LSM2-208	ENST00000375661	C1orf189	Q5VU69	101 aa		11.62	□□□□□ -0.55
LSM2-208	ENST00000375661	MYRIP	Q8NFW9	859 aa		11.62	□□□□□ -0.55
LSM2-208	ENST00000375661	DNAJB14	Q8TBM8	379 aa		11.62	□□□□□ -0.55
LSM2-208	ENST00000375661	GRHL3	Q8TE85	626 aa		11.62	□□□□□ -0.55
LSM2-208	ENST00000375661	SKA2	Q8WVK7	121 aa	Predicted RBP	11.62	□□□□□ -0.55
LSM2-208	ENST00000375661	ASB11	Q8WXH4	323 aa		11.62	□□□□□ -0.55
LSM2-208	ENST00000375661	DLG3	Q92796	817 aa		11.62	□□□□□ -0.55
LSM2-208	ENST00000375661	ISL2	Q96A47	359 aa		11.62	□□□□□ -0.55
LSM2-208	ENST00000375661	LINGO1	Q96FE5	620 aa		11.62	□□□□□ -0.55
LSM2-208	ENST00000375661	TSPAN17	Q96FV3	270 aa		11.62	□□□□□ -0.55
LSM2-208	ENST00000375661	PDLIM5	Q96HC4	596 aa	Known RBP	11.62	□□□□□ -0.55
LSM2-208	ENST00000375661	OR2A14	Q96R47	310 aa		11.62	□□□□□ -0.55
LSM2-208	ENST00000375661	NDC1	Q9BTX1	674 aa		11.62	□□□□□ -0.55
LSM2-208	ENST00000375661	HGH1	Q9BTY7	390 aa		11.62	□□□□□ -0.55
LSM2-208	ENST00000375661	MENT	Q9BUN1	341 aa		11.62	□□□□□ -0.55
LSM2-208	ENST00000375661	SPRTN	Q9H040	489 aa	Predicted RBP	11.62	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 6.4 ms