RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 CTU2Q2VPK5 515 aaKnown RBP20.11■□□□□ 0.81
CCDC88B-203ENST00000359902 BROXQ5VW32 411 aa20.11■□□□□ 0.81
CCDC88B-203ENST00000359902 SHQ1Q6PI26 577 aaKnown RBP20.11■□□□□ 0.81
CCDC88B-203ENST00000359902 SLCO4C1Q6ZQN7 724 aa20.11■□□□□ 0.81
CCDC88B-203ENST00000359902 TMEM26Q6ZUK4 368 aa20.11■□□□□ 0.81
CCDC88B-203ENST00000359902 SH3KBP1Q96B97 665 aa20.11■□□□□ 0.81
CCDC88B-203ENST00000359902 TBC1D20Q96BZ9 403 aa20.11■□□□□ 0.81
CCDC88B-203ENST00000359902 DUSP26Q9BV47 211 aa20.11■□□□□ 0.81
CCDC88B-203ENST00000359902 CDH7Q9ULB5 785 aa20.11■□□□□ 0.81
CCDC88B-203ENST00000359902 ABCG2Q9UNQ0 655 aa20.11■□□□□ 0.81
CCDC88B-203ENST00000359902 H3BMQ9 156 aa20.1■□□□□ 0.81
CCDC88B-203ENST00000359902 ANXA4P09525 319 aaPredicted RBP20.1■□□□□ 0.81
CCDC88B-203ENST00000359902 KDELR2P33947 212 aa20.1■□□□□ 0.81
CCDC88B-203ENST00000359902 NUP107P57740 925 aa20.1■□□□□ 0.81
CCDC88B-203ENST00000359902 CD47Q08722 323 aa20.1■□□□□ 0.81
CCDC88B-203ENST00000359902 CAMK1Q14012 370 aa20.1■□□□□ 0.81
CCDC88B-203ENST00000359902 C16orf72Q14CZ0 275 aa20.1■□□□□ 0.81
CCDC88B-203ENST00000359902 ERICH5Q6P6B1 374 aa20.1■□□□□ 0.81
CCDC88B-203ENST00000359902 TRIM74Q86UV6 250 aa20.1■□□□□ 0.81
CCDC88B-203ENST00000359902 WFIKKN2Q8TEU8 576 aa20.1■□□□□ 0.81
CCDC88B-203ENST00000359902 ZNF480Q8WV37 535 aa20.1■□□□□ 0.81
CCDC88B-203ENST00000359902 STARD8Q92502 1023 aa20.1■□□□□ 0.81
CCDC88B-203ENST00000359902 SGCDQ92629 289 aa20.1■□□□□ 0.81
CCDC88B-203ENST00000359902 CNDP2Q96KP4 475 aaKnown RBP20.1■□□□□ 0.81
CCDC88B-203ENST00000359902 COG8Q96MW5 612 aa20.1■□□□□ 0.81
CCDC88B-203ENST00000359902 PCDHB11Q9Y5F2 797 aa20.1■□□□□ 0.81
CCDC88B-203ENST00000359902 KCNE2Q9Y6J6 123 aa20.1■□□□□ 0.81
CCDC88B-203ENST00000359902 K7ESM1 405 aa20.1■□□□□ 0.81
CCDC88B-203ENST00000359902 ASMTP46597 345 aa20.1■□□□□ 0.81
CCDC88B-203ENST00000359902 TPD52P55327 224 aaPredicted RBP20.1■□□□□ 0.81
CCDC88B-203ENST00000359902 ISL1P61371 349 aa20.1■□□□□ 0.81
CCDC88B-203ENST00000359902 XAF1Q6GPH4 301 aa20.1■□□□□ 0.81
CCDC88B-203ENST00000359902 LAIR2Q6ISS4 152 aa20.1■□□□□ 0.81
CCDC88B-203ENST00000359902 DHRS4L2Q6PKH6 230 aa20.1■□□□□ 0.81
CCDC88B-203ENST00000359902 GALNT10Q86SR1 603 aa20.1■□□□□ 0.81
CCDC88B-203ENST00000359902 CFAP206Q8IYR0 622 aa20.1■□□□□ 0.81
CCDC88B-203ENST00000359902 CELF5Q8N6W0 485 aaKnown RBP20.1■□□□□ 0.81
CCDC88B-203ENST00000359902 OR13F1Q8NGS4 319 aa20.1■□□□□ 0.81
CCDC88B-203ENST00000359902 NXPE3Q969Y0 559 aa20.1■□□□□ 0.81
CCDC88B-203ENST00000359902 RSPRY1Q96DX4 576 aa20.1■□□□□ 0.81
CCDC88B-203ENST00000359902 DPH2Q9BQC3 489 aaPredicted RBP20.1■□□□□ 0.81
CCDC88B-203ENST00000359902 NAA50Q9GZZ1 169 aaKnown RBP20.1■□□□□ 0.81
CCDC88B-203ENST00000359902 FANCEQ9HB96 536 aa20.1■□□□□ 0.81
CCDC88B-203ENST00000359902 SLC16A6O15403 523 aa20.09■□□□□ 0.81
CCDC88B-203ENST00000359902 LILRB5O75023 590 aa20.09■□□□□ 0.81
CCDC88B-203ENST00000359902 ABCB7O75027 752 aa20.09■□□□□ 0.81
CCDC88B-203ENST00000359902 SEMG1P04279 462 aa20.09■□□□□ 0.81
CCDC88B-203ENST00000359902 GRSF1Q12849 480 aaKnown RBP eCLIP20.09■□□□□ 0.81
CCDC88B-203ENST00000359902 SKIV2LQ15477 1246 aaKnown RBP20.09■□□□□ 0.81
CCDC88B-203ENST00000359902 ZC3H12BQ5HYM0 836 aaKnown RBP20.09■□□□□ 0.81
CCDC88B-203ENST00000359902 CPTPQ5TA50 214 aa20.09■□□□□ 0.81
CCDC88B-203ENST00000359902 OR2T5Q6IEZ7 315 aa20.09■□□□□ 0.81
CCDC88B-203ENST00000359902 SPRED2Q7Z698 418 aa20.09■□□□□ 0.81
CCDC88B-203ENST00000359902 FBXO15Q8NCQ5 510 aaPredicted RBP20.09■□□□□ 0.81
CCDC88B-203ENST00000359902 OR2T29Q8NH02 315 aa20.09■□□□□ 0.81
CCDC88B-203ENST00000359902 ZNF707Q96C28 371 aaPredicted RBP20.09■□□□□ 0.81
CCDC88B-203ENST00000359902 PHF12Q96QT6 1004 aa20.09■□□□□ 0.81
CCDC88B-203ENST00000359902 BARD1Q99728 777 aaKnown RBP20.09■□□□□ 0.81
CCDC88B-203ENST00000359902 TPT1P8Q9HAU6 139 aa20.09■□□□□ 0.81
CCDC88B-203ENST00000359902 SLC27A6Q9Y2P4 619 aa20.09■□□□□ 0.81
CCDC88B-203ENST00000359902 MRPS23Q9Y3D9 190 aaKnown RBP20.09■□□□□ 0.81
CCDC88B-203ENST00000359902 PRRT4C9JH25 899 aa20.09■□□□□ 0.81
CCDC88B-203ENST00000359902 ZNF197O14709 1029 aa20.09■□□□□ 0.81
CCDC88B-203ENST00000359902 HOXC11O43248 304 aaPredicted RBP20.09■□□□□ 0.81
CCDC88B-203ENST00000359902 TLL1O43897 1013 aa20.09■□□□□ 0.81
CCDC88B-203ENST00000359902 RPS13P62277 151 aaKnown RBP20.09■□□□□ 0.81
CCDC88B-203ENST00000359902 HPCAP84074 193 aa20.09■□□□□ 0.81
CCDC88B-203ENST00000359902 HKDC1Q2TB90 917 aa20.09■□□□□ 0.81
CCDC88B-203ENST00000359902 BCL7AQ4VC05 210 aa20.09■□□□□ 0.81
CCDC88B-203ENST00000359902 ZNF691Q5VV52 312 aa20.09■□□□□ 0.81
CCDC88B-203ENST00000359902 CAMKMTQ7Z624 323 aa20.09■□□□□ 0.81
CCDC88B-203ENST00000359902 TERB1Q8NA31 727 aa20.09■□□□□ 0.81
CCDC88B-203ENST00000359902 SAMD11Q96NU1 681 aa20.09■□□□□ 0.81
CCDC88B-203ENST00000359902 DCUN1D5Q9BTE7 237 aa20.09■□□□□ 0.81
CCDC88B-203ENST00000359902 OR2AG1Q9H205 316 aa20.09■□□□□ 0.81
CCDC88B-203ENST00000359902 TM9SF3Q9HD45 589 aa20.09■□□□□ 0.81
CCDC88B-203ENST00000359902 BTNL2Q9UIR0 455 aa20.09■□□□□ 0.81
CCDC88B-203ENST00000359902 RPS6KA6Q9UK32 745 aa20.09■□□□□ 0.81
CCDC88B-203ENST00000359902 TMX2-CTNND1H3BSU7 103 aa20.08■□□□□ 0.81
CCDC88B-203ENST00000359902 PRNPP04156 253 aa20.08■□□□□ 0.81
CCDC88B-203ENST00000359902 NPPBP16860 134 aa20.08■□□□□ 0.81
CCDC88B-203ENST00000359902 IDSP22304 550 aa20.08■□□□□ 0.81
CCDC88B-203ENST00000359902 RAD23AP54725 363 aa20.08■□□□□ 0.81
CCDC88B-203ENST00000359902 RFX4Q33E94 735 aa20.08■□□□□ 0.81
CCDC88B-203ENST00000359902 SPIN4Q56A73 249 aa20.08■□□□□ 0.81
CCDC88B-203ENST00000359902 MED27Q6P2C8 311 aa20.08■□□□□ 0.81
CCDC88B-203ENST00000359902 XKR5Q6UX68 686 aa20.08■□□□□ 0.81
CCDC88B-203ENST00000359902 CEP68Q76N32 757 aa20.08■□□□□ 0.81
CCDC88B-203ENST00000359902 VTCN1Q7Z7D3 282 aa20.08■□□□□ 0.81
CCDC88B-203ENST00000359902 TMPRSS11BQ86T26 416 aa20.08■□□□□ 0.81
CCDC88B-203ENST00000359902 CYP4Z1Q86W10 505 aa20.08■□□□□ 0.81
CCDC88B-203ENST00000359902 GPR156Q8NFN8 814 aa20.08■□□□□ 0.81
CCDC88B-203ENST00000359902 COQ8BQ96D53 544 aa20.08■□□□□ 0.81
CCDC88B-203ENST00000359902 TRIM64BA6NI03 449 aa20.08■□□□□ 0.8
CCDC88B-203ENST00000359902 MITFO75030 526 aaPredicted RBP20.08■□□□□ 0.8
CCDC88B-203ENST00000359902 SEC14L2O76054 403 aa20.08■□□□□ 0.8
CCDC88B-203ENST00000359902 HLA-EP13747 358 aa20.08■□□□□ 0.8
CCDC88B-203ENST00000359902 MATN1P21941 496 aa20.08■□□□□ 0.8
CCDC88B-203ENST00000359902 TBPL1P62380 186 aa20.08■□□□□ 0.8
CCDC88B-203ENST00000359902 CATSPEREQ5SY80 951 aa20.08■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms