RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 CMC1Q7Z7K0 106 aa15.1■□□□□ 0.01
CLN3-201ENST00000333496 C17orf64Q86WR6 236 aa15.1■□□□□ 0.01
CLN3-201ENST00000333496 ARHGEF39Q8N4T4 335 aa15.1■□□□□ 0.01
CLN3-201ENST00000333496 TSPAN17Q96FV3 270 aa15.1■□□□□ 0.01
CLN3-201ENST00000333496 GEMIN8Q9NWZ8 242 aaKnown RBP15.1■□□□□ 0.01
CLN3-201ENST00000333496 CTNNAL1Q9UBT7 734 aa15.1■□□□□ 0.01
CLN3-201ENST00000333496 RUVBL1Q9Y265 456 aaKnown RBP15.1■□□□□ 0.01
CLN3-201ENST00000333496 HMX2A2RU54 273 aa15.09■□□□□ 0.01
CLN3-201ENST00000333496 P2RX6O15547 441 aa15.09■□□□□ 0.01
CLN3-201ENST00000333496 CDH1P12830 882 aa15.09■□□□□ 0.01
CLN3-201ENST00000333496 CD1DP15813 335 aa15.09■□□□□ 0.01
CLN3-201ENST00000333496 HRH2P25021 359 aa15.09■□□□□ 0.01
CLN3-201ENST00000333496 SNRPNP63162 240 aaKnown RBP15.09■□□□□ 0.01
CLN3-201ENST00000333496 CDKL1Q00532 357 aa15.09■□□□□ 0.01
CLN3-201ENST00000333496 ADAMTSL2Q86TH1 951 aa15.09■□□□□ 0.01
CLN3-201ENST00000333496 METTL27Q8N6F8 245 aaPredicted RBP15.09■□□□□ 0.01
CLN3-201ENST00000333496 CSNK1A1LQ8N752 337 aa15.09■□□□□ 0.01
CLN3-201ENST00000333496 ATL1Q8WXF7 558 aa15.09■□□□□ 0.01
CLN3-201ENST00000333496 PTERQ96BW5 349 aa15.09■□□□□ 0.01
CLN3-201ENST00000333496 MRRFQ96E11 262 aaKnown RBP15.09■□□□□ 0.01
CLN3-201ENST00000333496 C17orf62Q9BQA9 187 aa15.09■□□□□ 0.01
CLN3-201ENST00000333496 ACSS3Q9H6R3 686 aa15.09■□□□□ 0.01
CLN3-201ENST00000333496 GPN3Q9UHW5 284 aaPredicted RBP15.09■□□□□ 0.01
CLN3-201ENST00000333496 MAU2Q9Y6X3 613 aa15.09■□□□□ 0.01
CLN3-201ENST00000333496 FEZF1A0PJY2 475 aa15.08■□□□□ 0
CLN3-201ENST00000333496 PABPN1LA6NDY0 278 aaKnown RBP15.08■□□□□ 0
CLN3-201ENST00000333496 LCMT2O60294 686 aaKnown RBP15.08■□□□□ 0
CLN3-201ENST00000333496 ACSL3O95573 720 aa15.08■□□□□ 0
CLN3-201ENST00000333496 SLC35E2BP0CK96 405 aa15.08■□□□□ 0
CLN3-201ENST00000333496 CSRP3P50461 194 aa15.08■□□□□ 0
CLN3-201ENST00000333496 EMP3P54852 163 aa15.08■□□□□ 0
CLN3-201ENST00000333496 DLG1Q12959 904 aa15.08■□□□□ 0
CLN3-201ENST00000333496 CSHL1Q14406 222 aa15.08■□□□□ 0
CLN3-201ENST00000333496 TGFBIQ15582 683 aa15.08■□□□□ 0
CLN3-201ENST00000333496 MUM1Q2TAK8 710 aa15.08■□□□□ 0
CLN3-201ENST00000333496 C18orf21Q32NC0 220 aaPredicted RBP15.08■□□□□ 0
CLN3-201ENST00000333496 CEP128Q6ZU80 1094 aa15.08■□□□□ 0
CLN3-201ENST00000333496 VN1R4Q7Z5H5 301 aa15.08■□□□□ 0
CLN3-201ENST00000333496 IFT20Q8IY31 132 aa15.08■□□□□ 0
CLN3-201ENST00000333496 ABHD11Q8NFV4 315 aa15.08■□□□□ 0
CLN3-201ENST00000333496 THAP4Q8WY91 577 aa15.08■□□□□ 0
CLN3-201ENST00000333496 HAUS8Q9BT25 410 aa15.08■□□□□ 0
CLN3-201ENST00000333496 TRIM55Q9BYV6 548 aa15.08■□□□□ 0
CLN3-201ENST00000333496 TSPYL1Q9H0U9 437 aa15.08■□□□□ 0
CLN3-201ENST00000333496 ADNPQ9H2P0 1102 aa15.08■□□□□ 0
CLN3-201ENST00000333496 MAN2B2Q9Y2E5 1009 aa15.08■□□□□ 0
CLN3-201ENST00000333496 PADI2Q9Y2J8 665 aa15.08■□□□□ 0
CLN3-201ENST00000333496 PTRH2Q9Y3E5 179 aaKnown RBP15.08■□□□□ 0
CLN3-201ENST00000333496 SCN2AQ99250 2005 aa15.08■□□□□ 0
CLN3-201ENST00000333496 CFAP46Q8IYW2 2715 aa15.07■□□□□ 0
CLN3-201ENST00000333496 KCNE1BA0A087WTH5 132 aa15.07■□□□□ 0
CLN3-201ENST00000333496 STATHP02808 62 aa15.07■□□□□ 0
CLN3-201ENST00000333496 UMODP07911 640 aa15.07■□□□□ 0
CLN3-201ENST00000333496 ANXA5P08758 320 aa15.07■□□□□ 0
CLN3-201ENST00000333496 TNFRSF8P28908 595 aa15.07■□□□□ 0
CLN3-201ENST00000333496 PHBP35232 272 aa15.07■□□□□ 0
CLN3-201ENST00000333496 KCNAB2Q13303 367 aa15.07■□□□□ 0
CLN3-201ENST00000333496 SLMAPQ14BN4 828 aa15.07■□□□□ 0
CLN3-201ENST00000333496 OR4D1Q15615 310 aa15.07■□□□□ 0
CLN3-201ENST00000333496 NKG7Q16617 165 aa15.07■□□□□ 0
CLN3-201ENST00000333496 OVCH1Q7RTY7 1134 aa15.07■□□□□ 0
CLN3-201ENST00000333496 OR4K1Q8NGD4 311 aa15.07■□□□□ 0
CLN3-201ENST00000333496 OR2Y1Q8NGV0 311 aa15.07■□□□□ 0
CLN3-201ENST00000333496 NEIL2Q969S2 332 aa15.07■□□□□ 0
CLN3-201ENST00000333496 RERGQ96A58 199 aaPredicted RBP15.07■□□□□ 0
CLN3-201ENST00000333496 FKBP10Q96AY3 582 aa15.07■□□□□ 0
CLN3-201ENST00000333496 RHBDF1Q96CC6 855 aa15.07■□□□□ 0
CLN3-201ENST00000333496 CABS1Q96KC9 395 aa15.07■□□□□ 0
CLN3-201ENST00000333496 CYTH2Q99418 400 aa15.07■□□□□ 0
CLN3-201ENST00000333496 SPNS1Q9H2V7 528 aa15.07■□□□□ 0
CLN3-201ENST00000333496 TUBD1Q9UJT1 453 aa15.07■□□□□ 0
CLN3-201ENST00000333496 NFU1Q9UMS0 254 aa15.07■□□□□ 0
CLN3-201ENST00000333496 SLC22A14Q9Y267 594 aa15.07■□□□□ 0
CLN3-201ENST00000333496 DOCK10Q96BY6 2186 aa15.07■□□□□ 0
CLN3-201ENST00000333496 NCF1BA6NI72 391 aaPredicted RBP15.06■□□□□ 0
CLN3-201ENST00000333496 NCF1CA8MVU1 366 aaPredicted RBP15.06■□□□□ 0
CLN3-201ENST00000333496 FOXS1O43638 330 aa15.06■□□□□ 0
CLN3-201ENST00000333496 DNAJB5O75953 348 aa15.06■□□□□ 0
CLN3-201ENST00000333496 ALBP02768 609 aa15.06■□□□□ 0
CLN3-201ENST00000333496 NCF1P14598 390 aaPredicted RBP15.06■□□□□ 0
CLN3-201ENST00000333496 BCL6P41182 706 aa15.06■□□□□ 0
CLN3-201ENST00000333496 KCNC1P48547 511 aa15.06■□□□□ 0
CLN3-201ENST00000333496 PMS2P54278 862 aa15.06■□□□□ 0
CLN3-201ENST00000333496 RPS15AP62244 130 aaKnown RBP15.06■□□□□ 0
CLN3-201ENST00000333496 MEF2AQ02078 507 aaPredicted RBP15.06■□□□□ 0
CLN3-201ENST00000333496 CHAF1BQ13112 559 aa15.06■□□□□ 0
CLN3-201ENST00000333496 BMPR2Q13873 1038 aa15.06■□□□□ 0
CLN3-201ENST00000333496 SSPNQ14714 243 aa15.06■□□□□ 0
CLN3-201ENST00000333496 CATSPEREQ5SY80 951 aa15.06■□□□□ 0
CLN3-201ENST00000333496 MROH9Q5TGP6 573 aa15.06■□□□□ 0
CLN3-201ENST00000333496 CPZQ66K79 652 aa15.06■□□□□ 0
CLN3-201ENST00000333496 FRA10AC1Q70Z53 315 aa15.06■□□□□ 0
CLN3-201ENST00000333496 THOC6Q86W42 341 aaKnown RBP15.06■□□□□ 0
CLN3-201ENST00000333496 APLFQ8IW19 511 aaPredicted RBP15.06■□□□□ 0
CLN3-201ENST00000333496 TM4SF19Q96DZ7 209 aa15.06■□□□□ 0
CLN3-201ENST00000333496 SPSB2Q99619 263 aa15.06■□□□□ 0
CLN3-201ENST00000333496 EGFL8Q99944 293 aa15.06■□□□□ 0
CLN3-201ENST00000333496 MACROD1Q9BQ69 325 aa15.06■□□□□ 0
CLN3-201ENST00000333496 SARGQ9BW04 601 aa15.06■□□□□ 0
CLN3-201ENST00000333496 SLC26A1Q9H2B4 701 aa15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms