RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 PRTGQ2VWP7 1150 aa13.38□□□□□ -0.27
LIMS1-201ENST00000332345 GARNL3Q5VVW2 1013 aa13.38□□□□□ -0.27
LIMS1-201ENST00000332345 PRMT9Q6P2P2 845 aa13.38□□□□□ -0.27
LIMS1-201ENST00000332345 KLC3Q6P597 504 aa13.38□□□□□ -0.27
LIMS1-201ENST00000332345 ENDOVQ8N8Q3 282 aaKnown RBP13.38□□□□□ -0.27
LIMS1-201ENST00000332345 OR4K1Q8NGD4 311 aa13.38□□□□□ -0.27
LIMS1-201ENST00000332345 SLC5A11Q8WWX8 675 aa13.38□□□□□ -0.27
LIMS1-201ENST00000332345 PTERQ96BW5 349 aa13.38□□□□□ -0.27
LIMS1-201ENST00000332345 NXNL1Q96CM4 212 aa13.38□□□□□ -0.27
LIMS1-201ENST00000332345 CABS1Q96KC9 395 aa13.38□□□□□ -0.27
LIMS1-201ENST00000332345 OR4K3Q96R72 315 aa13.38□□□□□ -0.27
LIMS1-201ENST00000332345 ARHGAP9Q9BRR9 750 aa13.38□□□□□ -0.27
LIMS1-201ENST00000332345 ALG9Q9H6U8 611 aa13.38□□□□□ -0.27
LIMS1-201ENST00000332345 TCFL5Q9UL49 500 aa13.38□□□□□ -0.27
LIMS1-201ENST00000332345 CDC14AQ9UNH5 594 aa13.38□□□□□ -0.27
LIMS1-201ENST00000332345 CHD6Q8TD26 2715 aa13.38□□□□□ -0.27
LIMS1-201ENST00000332345 SYCE1LA8MT33 242 aa13.37□□□□□ -0.27
LIMS1-201ENST00000332345 H2AFYO75367 372 aaKnown RBP13.37□□□□□ -0.27
LIMS1-201ENST00000332345 IPO13O94829 963 aaKnown RBP13.37□□□□□ -0.27
LIMS1-201ENST00000332345 WDR47O94967 919 aa13.37□□□□□ -0.27
LIMS1-201ENST00000332345 KLHL2O95198 593 aa13.37□□□□□ -0.27
LIMS1-201ENST00000332345 SLU7O95391 586 aaKnown RBP13.37□□□□□ -0.27
LIMS1-201ENST00000332345 ONECUT2O95948 504 aa13.37□□□□□ -0.27
LIMS1-201ENST00000332345 ALBP02768 609 aa13.37□□□□□ -0.27
LIMS1-201ENST00000332345 CAPN1P07384 714 aa13.37□□□□□ -0.27
LIMS1-201ENST00000332345 SNRPAP09012 282 aaKnown RBP13.37□□□□□ -0.27
LIMS1-201ENST00000332345 GNAZP19086 355 aa13.37□□□□□ -0.27
LIMS1-201ENST00000332345 DLG1Q12959 904 aa13.37□□□□□ -0.27
LIMS1-201ENST00000332345 ACAP2Q15057 778 aa13.37□□□□□ -0.27
LIMS1-201ENST00000332345 NCF4Q15080 339 aa13.37□□□□□ -0.27
LIMS1-201ENST00000332345 TBR1Q16650 682 aa13.37□□□□□ -0.27
LIMS1-201ENST00000332345 NDUFA9Q16795 377 aa13.37□□□□□ -0.27
LIMS1-201ENST00000332345 UGT8Q16880 541 aa13.37□□□□□ -0.27
LIMS1-201ENST00000332345 BORAQ6PGQ7 559 aa13.37□□□□□ -0.27
LIMS1-201ENST00000332345 FAM198BQ6UWH4 519 aa13.37□□□□□ -0.27
LIMS1-201ENST00000332345 PLD3Q8IV08 490 aa13.37□□□□□ -0.27
LIMS1-201ENST00000332345 KLHDC8AQ8IYD2 350 aa13.37□□□□□ -0.27
LIMS1-201ENST00000332345 CAMKVQ8NCB2 501 aa13.37□□□□□ -0.27
LIMS1-201ENST00000332345 RHEBL1Q8TAI7 183 aa13.37□□□□□ -0.27
LIMS1-201ENST00000332345 DCAKDQ8WVC6 231 aa13.37□□□□□ -0.27
LIMS1-201ENST00000332345 THAP4Q8WY91 577 aa13.37□□□□□ -0.27
LIMS1-201ENST00000332345 TTC9Q92623 222 aa13.37□□□□□ -0.27
LIMS1-201ENST00000332345 EXTL1Q92935 676 aa13.37□□□□□ -0.27
LIMS1-201ENST00000332345 NEIL2Q969S2 332 aa13.37□□□□□ -0.27
LIMS1-201ENST00000332345 MVB12AQ96EY5 273 aa13.37□□□□□ -0.27
LIMS1-201ENST00000332345 TXLNGYQ9BZA5 131 aa13.37□□□□□ -0.27
LIMS1-201ENST00000332345 VPS11Q9H270 941 aa13.37□□□□□ -0.27
LIMS1-201ENST00000332345 ZNF304Q9HCX3 659 aa13.37□□□□□ -0.27
LIMS1-201ENST00000332345 IGSF5Q9NSI5 407 aa13.37□□□□□ -0.27
LIMS1-201ENST00000332345 WWOXQ9NZC7 414 aa13.37□□□□□ -0.27
LIMS1-201ENST00000332345 PTBP2Q9UKA9 531 aaKnown RBP13.37□□□□□ -0.27
LIMS1-201ENST00000332345 SH2B3Q9UQQ2 575 aa13.37□□□□□ -0.27
LIMS1-201ENST00000332345 POLHQ9Y253 713 aa13.37□□□□□ -0.27
LIMS1-201ENST00000332345 FER1L5A0AVI2 2057 aa13.36□□□□□ -0.27
LIMS1-201ENST00000332345 FEZF1A0PJY2 475 aa13.36□□□□□ -0.27
LIMS1-201ENST00000332345 CDC14CA4D256 554 aa13.36□□□□□ -0.27
LIMS1-201ENST00000332345 ATXN7O15265 892 aaPredicted RBP13.36□□□□□ -0.27
LIMS1-201ENST00000332345 OR1F1O43749 312 aa13.36□□□□□ -0.27
LIMS1-201ENST00000332345 LCMT2O60294 686 aaKnown RBP13.36□□□□□ -0.27
LIMS1-201ENST00000332345 KERAO60938 352 aa13.36□□□□□ -0.27
LIMS1-201ENST00000332345 STK16O75716 305 aa13.36□□□□□ -0.27
LIMS1-201ENST00000332345 ALDOAP04075 364 aaKnown RBP13.36□□□□□ -0.27
LIMS1-201ENST00000332345 COL6A2P12110 1019 aa13.36□□□□□ -0.27
LIMS1-201ENST00000332345 CXCR2P25025 360 aa13.36□□□□□ -0.27
LIMS1-201ENST00000332345 CCR10P46092 362 aa13.36□□□□□ -0.27
LIMS1-201ENST00000332345 SLC6A12P48065 614 aa13.36□□□□□ -0.27
LIMS1-201ENST00000332345 KCNC1P48547 511 aa13.36□□□□□ -0.27
LIMS1-201ENST00000332345 CSRP3P50461 194 aa13.36□□□□□ -0.27
LIMS1-201ENST00000332345 RPS18P62269 152 aaKnown RBP13.36□□□□□ -0.27
LIMS1-201ENST00000332345 FAM53BQ14153 422 aa13.36□□□□□ -0.27
LIMS1-201ENST00000332345 SSPNQ14714 243 aa13.36□□□□□ -0.27
LIMS1-201ENST00000332345 HKDC1Q2TB90 917 aa13.36□□□□□ -0.27
LIMS1-201ENST00000332345 DEFB109BQ30KR1 87 aa13.36□□□□□ -0.27
LIMS1-201ENST00000332345 CATSPEREQ5SY80 951 aa13.36□□□□□ -0.27
LIMS1-201ENST00000332345 ADGRD1Q6QNK2 874 aa13.36□□□□□ -0.27
LIMS1-201ENST00000332345 NXPE4Q6UWF7 544 aa13.36□□□□□ -0.27
LIMS1-201ENST00000332345 OVCH1Q7RTY7 1134 aa13.36□□□□□ -0.27
LIMS1-201ENST00000332345 CENPLQ8N0S6 344 aaPredicted RBP13.36□□□□□ -0.27
LIMS1-201ENST00000332345 PDPRQ8NCN5 879 aa13.36□□□□□ -0.27
LIMS1-201ENST00000332345 KCTD4Q8WVF5 259 aa13.36□□□□□ -0.27
LIMS1-201ENST00000332345 APOBEC4Q8WW27 367 aaKnown RBP13.36□□□□□ -0.27
LIMS1-201ENST00000332345 SLC13A3Q8WWT9 602 aa13.36□□□□□ -0.27
LIMS1-201ENST00000332345 COL26A1Q96A83 441 aa13.36□□□□□ -0.27
LIMS1-201ENST00000332345 FKBP10Q96AY3 582 aa13.36□□□□□ -0.27
LIMS1-201ENST00000332345 MTBPQ96DY7 904 aa13.36□□□□□ -0.27
LIMS1-201ENST00000332345 TSNARE1Q96NA8 513 aa13.36□□□□□ -0.27
LIMS1-201ENST00000332345 RUFY1Q96T51 708 aa13.36□□□□□ -0.27
LIMS1-201ENST00000332345 AIF1LQ9BQI0 150 aa13.36□□□□□ -0.27
LIMS1-201ENST00000332345 SARGQ9BW04 601 aa13.36□□□□□ -0.27
LIMS1-201ENST00000332345 PELI2Q9HAT8 420 aa13.36□□□□□ -0.27
LIMS1-201ENST00000332345 GPRC5BQ9NZH0 403 aa13.36□□□□□ -0.27
LIMS1-201ENST00000332345 NUDT4Q9NZJ9 180 aa13.36□□□□□ -0.27
LIMS1-201ENST00000332345 FETUBQ9UGM5 382 aa13.36□□□□□ -0.27
LIMS1-201ENST00000332345 RUVBL1Q9Y265 456 aaKnown RBP13.36□□□□□ -0.27
LIMS1-201ENST00000332345 TRBC2A0A5B9 178 aa13.35□□□□□ -0.27
LIMS1-201ENST00000332345 EIF4E1BA6NMX2 242 aaKnown RBP13.35□□□□□ -0.27
LIMS1-201ENST00000332345 SUPT3HB4E1H0 165 aa13.35□□□□□ -0.27
LIMS1-201ENST00000332345 TRIM49D1C9J1S8 452 aa13.35□□□□□ -0.27
LIMS1-201ENST00000332345 TK2O00142 265 aa13.35□□□□□ -0.27
LIMS1-201ENST00000332345 CLGNO14967 610 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms