RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 LMAN1LQ9HAT1 526 aa2.97□□□□□ -1.93
HMGB1-201ENST00000326004 ATAD3AQ9NVI7 634 aa2.97□□□□□ -1.93
HMGB1-201ENST00000326004 DDX43Q9NXZ2 648 aaKnown RBP2.97□□□□□ -1.93
HMGB1-201ENST00000326004 PKD2L2Q9NZM6 624 aa2.97□□□□□ -1.93
HMGB1-201ENST00000326004 RASAL2Q9UJF2 1139 aa2.97□□□□□ -1.93
HMGB1-201ENST00000326004 KIAA1217Q5T5P2 1943 aa2.97□□□□□ -1.93
HMGB1-201ENST00000326004 IGSF1Q8N6C5 1336 aa2.96□□□□□ -1.93
HMGB1-201ENST00000326004 SOGA1O94964 1423 aa2.96□□□□□ -1.94
HMGB1-201ENST00000326004 SRCAPQ6ZRS2 3230 aa2.96□□□□□ -1.94
HMGB1-201ENST00000326004 TRBV5-5A0A0J9YX44 114 aa2.96□□□□□ -1.94
HMGB1-201ENST00000326004 MEIOCA2RUB1 952 aa2.96□□□□□ -1.94
HMGB1-201ENST00000326004 C17orf105B2RV13 164 aa2.96□□□□□ -1.94
HMGB1-201ENST00000326004 TMEM150CB9EJG8 249 aa2.96□□□□□ -1.94
HMGB1-201ENST00000326004 FAM86B1E9PN63 330 aa2.96□□□□□ -1.94
HMGB1-201ENST00000326004 F8VVB4 439 aa2.96□□□□□ -1.94
HMGB1-201ENST00000326004 F8VWA3 439 aa2.96□□□□□ -1.94
HMGB1-201ENST00000326004 SLC30A4O14863 429 aa2.96□□□□□ -1.94
HMGB1-201ENST00000326004 STX6O43752 255 aa2.96□□□□□ -1.94
HMGB1-201ENST00000326004 FCGR3BO75015 233 aa2.96□□□□□ -1.94
HMGB1-201ENST00000326004 SOCS5O75159 536 aa2.96□□□□□ -1.94
HMGB1-201ENST00000326004 SEC24AO95486 1093 aa2.96□□□□□ -1.94
HMGB1-201ENST00000326004 SERPING1P05155 500 aa2.96□□□□□ -1.94
HMGB1-201ENST00000326004 FAM86B2P0C5J1 330 aa2.96□□□□□ -1.94
HMGB1-201ENST00000326004 SLC2A2P11168 524 aaPredicted RBP2.96□□□□□ -1.94
HMGB1-201ENST00000326004 TIA1P31483 386 aaKnown RBP eCLIP2.96□□□□□ -1.945e-7■□□□□ 8.1
HMGB1-201ENST00000326004 SOAT1P35610 550 aa2.96□□□□□ -1.94
HMGB1-201ENST00000326004 NKX2-1P43699 371 aaPredicted RBP2.96□□□□□ -1.94
HMGB1-201ENST00000326004 PTENP60484 403 aa2.96□□□□□ -1.94
HMGB1-201ENST00000326004 SNRPD1P62314 119 aaKnown RBP2.96□□□□□ -1.94
HMGB1-201ENST00000326004 PMP22Q01453 160 aa2.96□□□□□ -1.94
HMGB1-201ENST00000326004 PTK6Q13882 451 aa2.96□□□□□ -1.94
HMGB1-201ENST00000326004 OPCMLQ14982 345 aa2.96□□□□□ -1.94
HMGB1-201ENST00000326004 GPR33Q49SQ1 333 aa2.96□□□□□ -1.94
HMGB1-201ENST00000326004 OTUD3Q5T2D3 398 aaPredicted RBP2.96□□□□□ -1.94
HMGB1-201ENST00000326004 SHQ1Q6PI26 577 aaKnown RBP2.96□□□□□ -1.94
HMGB1-201ENST00000326004 SLC25A47Q6Q0C1 308 aa2.96□□□□□ -1.94
HMGB1-201ENST00000326004 TMEM182Q6ZP80 229 aaPredicted RBP2.96□□□□□ -1.94
HMGB1-201ENST00000326004 NOTCH2NLQ7Z3S9 236 aa2.96□□□□□ -1.94
HMGB1-201ENST00000326004 CCDC60Q8IWA6 550 aaPredicted RBP2.96□□□□□ -1.94
HMGB1-201ENST00000326004 RCOR2Q8IZ40 523 aa2.96□□□□□ -1.94
HMGB1-201ENST00000326004 SIX6OS1Q8N1H7 587 aa2.96□□□□□ -1.94
HMGB1-201ENST00000326004 RAB42Q8N4Z0 105 aa2.96□□□□□ -1.94
HMGB1-201ENST00000326004 FAM89BQ8N5H3 189 aa2.96□□□□□ -1.94
HMGB1-201ENST00000326004 KLHDC1Q8N7A1 406 aa2.96□□□□□ -1.94
HMGB1-201ENST00000326004 WDSUB1Q8N9V3 476 aa2.96□□□□□ -1.94
HMGB1-201ENST00000326004 SLC37A3Q8NCC5 494 aa2.96□□□□□ -1.94
HMGB1-201ENST00000326004 GPRC5AQ8NFJ5 357 aa2.96□□□□□ -1.94
HMGB1-201ENST00000326004 OR7A2PQ8NGA2 310 aa2.96□□□□□ -1.94
HMGB1-201ENST00000326004 GOT1L1Q8NHS2 421 aaPredicted RBP2.96□□□□□ -1.94
HMGB1-201ENST00000326004 HCAR2Q8TDS4 363 aa2.96□□□□□ -1.94
HMGB1-201ENST00000326004 GRK7Q8WTQ7 553 aa2.96□□□□□ -1.94
HMGB1-201ENST00000326004 ZNRF4Q8WWF5 429 aa2.96□□□□□ -1.94
HMGB1-201ENST00000326004 METTL21AQ8WXB1 218 aa2.96□□□□□ -1.94
HMGB1-201ENST00000326004 PIK3R3Q92569 461 aa2.96□□□□□ -1.94
HMGB1-201ENST00000326004 DNASE1L2Q92874 299 aa2.96□□□□□ -1.94
HMGB1-201ENST00000326004 MR1Q95460 341 aa2.96□□□□□ -1.94
HMGB1-201ENST00000326004 MAGED4Q96JG8 741 aa2.96□□□□□ -1.94
HMGB1-201ENST00000326004 C10orf90Q96M02 699 aa2.96□□□□□ -1.94
HMGB1-201ENST00000326004 CCDC114Q96M63 670 aa2.96□□□□□ -1.94
HMGB1-201ENST00000326004 GDAP1L1Q96MZ0 367 aa2.96□□□□□ -1.94
HMGB1-201ENST00000326004 LPAR4Q99677 370 aa2.96□□□□□ -1.94
HMGB1-201ENST00000326004 NKX3-1Q99801 234 aaPredicted RBP2.96□□□□□ -1.94
HMGB1-201ENST00000326004 CCDC3Q9BQI4 270 aa2.96□□□□□ -1.94
HMGB1-201ENST00000326004 FUCA2Q9BTY2 467 aa2.96□□□□□ -1.94
HMGB1-201ENST00000326004 ATP13A3Q9H7F0 1226 aa2.96□□□□□ -1.94
HMGB1-201ENST00000326004 GRPEL1Q9HAV7 217 aa2.96□□□□□ -1.94
HMGB1-201ENST00000326004 MRGBPQ9NV56 204 aa2.96□□□□□ -1.94
HMGB1-201ENST00000326004 RNF186Q9NXI6 227 aa2.96□□□□□ -1.94
HMGB1-201ENST00000326004 UHRF1BP1Q6BDS2 1440 aa2.95□□□□□ -1.94
HMGB1-201ENST00000326004 KIAA0586Q9BVV6 1533 aa2.95□□□□□ -1.94
HMGB1-201ENST00000326004 FAM170AA1A519 330 aa2.95□□□□□ -1.94
HMGB1-201ENST00000326004 OOEPA6NGQ2 149 aa2.95□□□□□ -1.94
HMGB1-201ENST00000326004 H0Y626 953 aa2.95□□□□□ -1.94
HMGB1-201ENST00000326004 H0YAE9 185 aa2.95□□□□□ -1.94
HMGB1-201ENST00000326004 NR5A2O00482 541 aa2.95□□□□□ -1.94
HMGB1-201ENST00000326004 TEX28O15482 410 aa2.95□□□□□ -1.94
HMGB1-201ENST00000326004 FLRT2O43155 660 aa2.95□□□□□ -1.94
HMGB1-201ENST00000326004 PPIP5K2O43314 1243 aa2.95□□□□□ -1.94
HMGB1-201ENST00000326004 PRAF2O60831 178 aa2.95□□□□□ -1.94
HMGB1-201ENST00000326004 SLU7O95391 586 aaKnown RBP2.95□□□□□ -1.94
HMGB1-201ENST00000326004 BAG3O95817 575 aa2.95□□□□□ -1.94
HMGB1-201ENST00000326004 ATP1B1P05026 303 aa2.95□□□□□ -1.94
HMGB1-201ENST00000326004 STAG3L1P0CL83 205 aa2.95□□□□□ -1.94
HMGB1-201ENST00000326004 RNF224P0DH78 156 aa2.95□□□□□ -1.94
HMGB1-201ENST00000326004 PRKAR1AP10644 381 aa2.95□□□□□ -1.94
HMGB1-201ENST00000326004 ZNF26P17031 533 aaPredicted RBP2.95□□□□□ -1.94
HMGB1-201ENST00000326004 TLX1P31314 330 aaPredicted RBP2.95□□□□□ -1.94
HMGB1-201ENST00000326004 SFTPDP35247 375 aa2.95□□□□□ -1.94
HMGB1-201ENST00000326004 DNA2P51530 1060 aa2.95□□□□□ -1.94
HMGB1-201ENST00000326004 IL10RBQ08334 325 aa2.95□□□□□ -1.94
HMGB1-201ENST00000326004 SGCGQ13326 291 aa2.95□□□□□ -1.94
HMGB1-201ENST00000326004 TRIM29Q14134 588 aa2.95□□□□□ -1.94
HMGB1-201ENST00000326004 ZNF74Q16587 644 aa2.95□□□□□ -1.94
HMGB1-201ENST00000326004 TAZQ16635 292 aa2.95□□□□□ -1.94
HMGB1-201ENST00000326004 SGSM1Q2NKQ1 1148 aa2.95□□□□□ -1.94
HMGB1-201ENST00000326004 LBHQ53QV2 105 aaPredicted RBP2.95□□□□□ -1.94
HMGB1-201ENST00000326004 ADAMTSL4-AS1Q5T5F5 129 aa2.95□□□□□ -1.94
HMGB1-201ENST00000326004 PWWP2BQ6NUJ5 590 aa2.95□□□□□ -1.94
HMGB1-201ENST00000326004 FUT10Q6P4F1 479 aa2.95□□□□□ -1.94
HMGB1-201ENST00000326004 FIP1L1Q6UN15 594 aaKnown RBP2.95□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms