RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 GTF2H2CQ6P1K8 395 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 EPGNQ6UW88 154 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 TMEM139Q8IV31 216 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 HHIPL1Q96JK4 782 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 COL11A1P12107 1806 aaPredicted RBP3.91□□□□□ -1.78
USH2A-201ENST00000307340 OR5K3A6NET4 321 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 M0R233 179 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 MUSKO15146 869 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 ZNF157P51786 506 aaPredicted RBP3.91□□□□□ -1.78
USH2A-201ENST00000307340 LCN8Q6JVE9 175 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 ILDR1Q86SU0 546 aaPredicted RBP3.91□□□□□ -1.78
USH2A-201ENST00000307340 CNTN4Q8IWV2 1026 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 SLC2A12Q8TD20 617 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 ZBED3Q96IU2 234 aaPredicted RBP3.91□□□□□ -1.78
USH2A-201ENST00000307340 SENP8Q96LD8 212 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 FZD8Q9H461 694 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 CASKO14936 926 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 RNGTTO60942 597 aaKnown RBP3.91□□□□□ -1.78
USH2A-201ENST00000307340 TSC22D2O75157 780 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 ZMPSTE24O75844 475 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 IFNA21P01568 189 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 RAF1P04049 648 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 LPLP06858 475 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 MLLT1Q03111 559 aaPredicted RBP3.91□□□□□ -1.78
USH2A-201ENST00000307340 FGD3Q5JSP0 725 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 MISPQ8IVT2 679 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 PAPD5Q8NDF8 572 aaKnown RBP3.91□□□□□ -1.78
USH2A-201ENST00000307340 TWIST2Q8WVJ9 160 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 OR4K3Q96R72 315 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 SLA2Q9H6Q3 261 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 PTGES2Q9H7Z7 377 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 C12orf10Q9HB07 376 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 SEC16AO15027 2179 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 HNRNPFP52597 415 aaKnown RBP3.91□□□□□ -1.78
USH2A-201ENST00000307340 MEF2DQ14814 521 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 NKAIN3Q8N8D7 197 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 POMGNT2Q8NAT1 580 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 SLC35F5Q8WV83 523 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 EXT2Q93063 718 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 TLE6Q9H808 572 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 IL20Q9NYY1 176 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 FZD10Q9ULW2 581 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 FHP07954 510 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 ACTR1AP61163 376 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 DUSP6Q16828 381 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 AHSA2Q719I0 299 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 MED8Q96G25 268 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 SNRNP25Q9BV90 132 aaKnown RBP3.91□□□□□ -1.78
USH2A-201ENST00000307340 ARNT2Q9HBZ2 717 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 ANKRD66B4E2M5 251 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 ORC1Q13415 861 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 COL28A1Q2UY09 1125 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 ZNF404Q494X3 552 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 MAMDC4Q6UXC1 1216 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 UBR7Q8N806 425 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 GPR151Q8TDV0 419 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 NXPE3Q969Y0 559 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 TXN2Q99757 166 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 OMDQ99983 421 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 GTPBP2Q9BX10 602 aaKnown RBP3.91□□□□□ -1.78
USH2A-201ENST00000307340 POLR1DQ9Y2S0 133 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 CLCA1A8K7I4 914 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 DNTTP04053 509 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 IL7RP16871 459 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 LHCGRP22888 699 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 CYP4F2P78329 520 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 CYP4F3Q08477 520 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 AWAT2Q6E213 333 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 MFSD2AQ8NA29 543 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 LFNGQ8NES3 379 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 SUN5Q8TC36 379 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 CIDECQ96AQ7 238 aaPredicted RBP3.91□□□□□ -1.78
USH2A-201ENST00000307340 XKR8Q9H6D3 395 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 ZDHHC18Q9NUE0 388 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 POLLQ9UGP5 575 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 MCM3APO60318 1980 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 SLC12A8A0AV02 714 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 PP2D1A8MPX8 630 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 PLD2O14939 933 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 ANKRD28O15084 1053 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 SCAMP1O15126 338 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 SULT1B1O43704 296 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 HRGP04196 525 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 TP53P04637 393 aaPredicted RBP3.91□□□□□ -1.78
USH2A-201ENST00000307340 PNMTP11086 282 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 MGAT1P26572 445 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 POU1F1P28069 291 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 GALNT2Q10471 571 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 LRRC32Q14392 662 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 RBM39Q14498 530 aaKnown RBP3.91□□□□□ -1.78
USH2A-201ENST00000307340 KCNJ11Q14654 390 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 ABRAXAS2Q15018 415 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 MED22Q15528 200 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 CATSPEREQ5SY80 951 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 ZNF57Q68EA5 555 aaPredicted RBP3.91□□□□□ -1.78
USH2A-201ENST00000307340 C2CD4AQ8NCU7 369 aaPredicted RBP3.91□□□□□ -1.78
USH2A-201ENST00000307340 SMG8Q8ND04 991 aaKnown RBP3.91□□□□□ -1.78
USH2A-201ENST00000307340 ADAMTS15Q8TE58 950 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 SNX33Q8WV41 574 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 TRNT1Q96Q11 434 aaKnown RBP3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms