RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 CACHD1Q5VU97 1274 aa10.59□□□□□ -0.71
LSM3-201ENST00000306024 LYPD8Q6UX82 237 aa10.59□□□□□ -0.71
LSM3-201ENST00000306024 DYNC2LI1Q8TCX1 351 aa10.59□□□□□ -0.71
LSM3-201ENST00000306024 RDH12Q96NR8 316 aa10.59□□□□□ -0.71
LSM3-201ENST00000306024 SLC30A2Q9BRI3 323 aa10.59□□□□□ -0.71
LSM3-201ENST00000306024 COPS4Q9BT78 406 aa10.59□□□□□ -0.71
LSM3-201ENST00000306024 MLPHQ9BV36 600 aaPredicted RBP10.59□□□□□ -0.71
LSM3-201ENST00000306024 ZNF385DQ9H6B1 395 aa10.59□□□□□ -0.71
LSM3-201ENST00000306024 TIGARQ9NQ88 270 aa10.59□□□□□ -0.71
LSM3-201ENST00000306024 GDE1Q9NZC3 331 aa10.59□□□□□ -0.71
LSM3-201ENST00000306024 LYVE1Q9Y5Y7 322 aa10.59□□□□□ -0.71
LSM3-201ENST00000306024 DOCK6Q96HP0 2047 aa10.59□□□□□ -0.71
LSM3-201ENST00000306024 MEIOCA2RUB1 952 aa10.58□□□□□ -0.72
LSM3-201ENST00000306024 HLA-DPA1P20036 260 aa10.58□□□□□ -0.72
LSM3-201ENST00000306024 CYP2A7P20853 494 aa10.58□□□□□ -0.72
LSM3-201ENST00000306024 HOXC13P31276 330 aa10.58□□□□□ -0.72
LSM3-201ENST00000306024 WASP42768 502 aa10.58□□□□□ -0.72
LSM3-201ENST00000306024 HTR3AP46098 478 aa10.58□□□□□ -0.72
LSM3-201ENST00000306024 POLR2JP52435 117 aaKnown RBP10.58□□□□□ -0.72
LSM3-201ENST00000306024 CSTF3Q12996 717 aaKnown RBP10.58□□□□□ -0.72
LSM3-201ENST00000306024 GRB7Q14451 532 aa10.58□□□□□ -0.72
LSM3-201ENST00000306024 CDONQ4KMG0 1287 aa10.58□□□□□ -0.72
LSM3-201ENST00000306024 TRIQKQ629K1 86 aa10.58□□□□□ -0.72
LSM3-201ENST00000306024 ANKRD54Q6NXT1 300 aa10.58□□□□□ -0.72
LSM3-201ENST00000306024 FAM122CQ6P4D5 195 aa10.58□□□□□ -0.72
LSM3-201ENST00000306024 FAM131AQ6UXB0 335 aa10.58□□□□□ -0.72
LSM3-201ENST00000306024 GPR149Q86SP6 731 aa10.58□□□□□ -0.72
LSM3-201ENST00000306024 BEND7Q8N7W2 519 aaPredicted RBP10.58□□□□□ -0.72
LSM3-201ENST00000306024 FRS2Q8WU20 508 aa10.58□□□□□ -0.72
LSM3-201ENST00000306024 SLC38A4Q969I6 547 aa10.58□□□□□ -0.72
LSM3-201ENST00000306024 NECTIN4Q96NY8 510 aa10.58□□□□□ -0.72
LSM3-201ENST00000306024 CLEC4MQ9H2X3 399 aaPredicted RBP10.58□□□□□ -0.72
LSM3-201ENST00000306024 ELOVL6Q9H5J4 265 aa10.58□□□□□ -0.72
LSM3-201ENST00000306024 ATP6V1G2-DDX39BF2Z307 99 aa10.58□□□□□ -0.72
LSM3-201ENST00000306024 PLK4O00444 970 aa10.58□□□□□ -0.72
LSM3-201ENST00000306024 FGF1P05230 155 aa10.58□□□□□ -0.72
LSM3-201ENST00000306024 ERP29P30040 261 aaKnown RBP10.58□□□□□ -0.72
LSM3-201ENST00000306024 STK19P49842 368 aaPredicted RBP10.58□□□□□ -0.72
LSM3-201ENST00000306024 DIO3P55073 304 aa10.58□□□□□ -0.72
LSM3-201ENST00000306024 TAGLNQ01995 201 aaKnown RBP10.58□□□□□ -0.72
LSM3-201ENST00000306024 CDK5R2Q13319 367 aa10.58□□□□□ -0.72
LSM3-201ENST00000306024 PDGFRLQ15198 375 aa10.58□□□□□ -0.72
LSM3-201ENST00000306024 TIMM50Q3ZCQ8 353 aa10.58□□□□□ -0.72
LSM3-201ENST00000306024 FAM205BPQ63HN1 556 aa10.58□□□□□ -0.72
LSM3-201ENST00000306024 DET1Q7L5Y6 550 aa10.58□□□□□ -0.72
LSM3-201ENST00000306024 KRT73Q86Y46 540 aa10.58□□□□□ -0.72
LSM3-201ENST00000306024 ESX1Q8N693 406 aa10.58□□□□□ -0.72
LSM3-201ENST00000306024 OR6F1Q8NGZ6 308 aa10.58□□□□□ -0.72
LSM3-201ENST00000306024 UTP15Q8TED0 518 aaKnown RBP10.58□□□□□ -0.72
LSM3-201ENST00000306024 FAM120BQ96EK7 910 aaKnown RBP10.58□□□□□ -0.72
LSM3-201ENST00000306024 Q96MT0 163 aa10.58□□□□□ -0.72
LSM3-201ENST00000306024 FYTTD1Q96QD9 318 aaKnown RBP10.58□□□□□ -0.72
LSM3-201ENST00000306024 GON7Q9BXV9 100 aa10.58□□□□□ -0.72
LSM3-201ENST00000306024 MMP28Q9H239 520 aa10.58□□□□□ -0.72
LSM3-201ENST00000306024 SARS2Q9NP81 518 aaKnown RBP10.58□□□□□ -0.72
LSM3-201ENST00000306024 TSR3Q9UJK0 312 aaKnown RBP10.58□□□□□ -0.72
LSM3-201ENST00000306024 USP22Q9UPT9 525 aa10.58□□□□□ -0.72
LSM3-201ENST00000306024 IGLV3-10A0A075B6K4 115 aa10.58□□□□□ -0.72
LSM3-201ENST00000306024 A0A1W2PRG6 482 aa10.58□□□□□ -0.72
LSM3-201ENST00000306024 PRR23AA6NEV1 266 aa10.58□□□□□ -0.72
LSM3-201ENST00000306024 K7ERQ8 282 aa10.58□□□□□ -0.72
LSM3-201ENST00000306024 NDUFS3O75489 264 aa10.58□□□□□ -0.72
LSM3-201ENST00000306024 RAPSNQ13702 412 aa10.58□□□□□ -0.72
LSM3-201ENST00000306024 MED22Q15528 200 aa10.58□□□□□ -0.72
LSM3-201ENST00000306024 CLEC14AQ86T13 490 aa10.58□□□□□ -0.72
LSM3-201ENST00000306024 HID1Q8IV36 788 aa10.58□□□□□ -0.72
LSM3-201ENST00000306024 CACTIN-AS1Q8N1I8 211 aa10.58□□□□□ -0.72
LSM3-201ENST00000306024 PGBD3Q8N328 593 aa10.58□□□□□ -0.72
LSM3-201ENST00000306024 CPXM2Q8N436 756 aa10.58□□□□□ -0.72
LSM3-201ENST00000306024 RETREG1Q9H6L5 497 aa10.58□□□□□ -0.72
LSM3-201ENST00000306024 ATP13A2Q9NQ11 1180 aa10.58□□□□□ -0.72
LSM3-201ENST00000306024 INVSQ9Y283 1065 aa10.58□□□□□ -0.72
LSM3-201ENST00000306024 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP10.57□□□□□ -0.72
LSM3-201ENST00000306024 A0A1W2PP18 115 aa10.57□□□□□ -0.72
LSM3-201ENST00000306024 hCG_2039718K7EN88 272 aa10.57□□□□□ -0.72
LSM3-201ENST00000306024 M6PRP20645 277 aa10.57□□□□□ -0.72
LSM3-201ENST00000306024 GADD45AP24522 165 aa10.57□□□□□ -0.72
LSM3-201ENST00000306024 MYL9P24844 172 aa10.57□□□□□ -0.72
LSM3-201ENST00000306024 POU4F1Q01851 419 aa10.57□□□□□ -0.72
LSM3-201ENST00000306024 HYAL1Q12794 435 aa10.57□□□□□ -0.72
LSM3-201ENST00000306024 NR6A1Q15406 480 aa10.57□□□□□ -0.72
LSM3-201ENST00000306024 PYDC2Q56P42 97 aa10.57□□□□□ -0.72
LSM3-201ENST00000306024 ESRP1Q6NXG1 681 aaKnown RBP10.57□□□□□ -0.72
LSM3-201ENST00000306024 GCNT7Q6ZNI0 430 aa10.57□□□□□ -0.72
LSM3-201ENST00000306024 IDO2Q6ZQW0 420 aa10.57□□□□□ -0.72
LSM3-201ENST00000306024 CEP97Q8IW35 865 aa10.57□□□□□ -0.72
LSM3-201ENST00000306024 PELI3Q8N2H9 469 aa10.57□□□□□ -0.72
LSM3-201ENST00000306024 FIBINQ8TAL6 211 aa10.57□□□□□ -0.72
LSM3-201ENST00000306024 SKA2Q8WVK7 121 aaPredicted RBP10.57□□□□□ -0.72
LSM3-201ENST00000306024 SORCS1Q8WY21 1168 aa10.57□□□□□ -0.72
LSM3-201ENST00000306024 ZNF707Q96C28 371 aaPredicted RBP10.57□□□□□ -0.72
LSM3-201ENST00000306024 FRMD6Q96NE9 622 aa10.57□□□□□ -0.72
LSM3-201ENST00000306024 PSKH2Q96QS6 385 aa10.57□□□□□ -0.72
LSM3-201ENST00000306024 SLC22A4Q9H015 551 aa10.57□□□□□ -0.72
LSM3-201ENST00000306024 PRDM8Q9NQV8 689 aa10.57□□□□□ -0.72
LSM3-201ENST00000306024 INTS7Q9NVH2 962 aaKnown RBP10.57□□□□□ -0.72
LSM3-201ENST00000306024 MAP10Q9P2G4 905 aa10.57□□□□□ -0.72
LSM3-201ENST00000306024 SARDHQ9UL12 918 aa10.57□□□□□ -0.72
LSM3-201ENST00000306024 BRCA2P51587 3418 aa10.57□□□□□ -0.72
LSM3-201ENST00000306024 EPOPA6NHQ4 379 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms