RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 NECTIN3Q9NQS3 549 aa14.93□□□□□ -0.02
SHH-201ENST00000297261 KCTD5Q9NXV2 234 aa14.93□□□□□ -0.02
SHH-201ENST00000297261 NME6O75414 186 aaPredicted RBP14.93□□□□□ -0.02
SHH-201ENST00000297261 FUCA1P04066 466 aa14.93□□□□□ -0.02
SHH-201ENST00000297261 LCKP06239 509 aa14.93□□□□□ -0.02
SHH-201ENST00000297261 ABHD18Q0P651 414 aa14.93□□□□□ -0.02
SHH-201ENST00000297261 CARM1Q86X55 608 aa14.93□□□□□ -0.02
SHH-201ENST00000297261 SPARTQ8N0X7 666 aa14.93□□□□□ -0.02
SHH-201ENST00000297261 ZNF433Q8N7K0 673 aaPredicted RBP14.93□□□□□ -0.02
SHH-201ENST00000297261 PIGKQ92643 395 aa14.93□□□□□ -0.02
SHH-201ENST00000297261 ACDQ96AP0 544 aa14.93□□□□□ -0.02
SHH-201ENST00000297261 ZNF486Q96H40 463 aaPredicted RBP14.93□□□□□ -0.02
SHH-201ENST00000297261 HSH2DQ96JZ2 352 aa14.93□□□□□ -0.02
SHH-201ENST00000297261 DUSP26Q9BV47 211 aa14.93□□□□□ -0.02
SHH-201ENST00000297261 AASSQ9UDR5 926 aa14.93□□□□□ -0.02
SHH-201ENST00000297261 ZNF510Q9Y2H8 683 aa14.93□□□□□ -0.02
SHH-201ENST00000297261 GLYATL1P3A0A0U1RQE8 302 aa14.92□□□□□ -0.02
SHH-201ENST00000297261 VIPP01282 170 aa14.92□□□□□ -0.02
SHH-201ENST00000297261 RPP38P78345 283 aaKnown RBP14.92□□□□□ -0.02
SHH-201ENST00000297261 SRSF11Q05519 484 aaKnown RBP14.92□□□□□ -0.02
SHH-201ENST00000297261 TEAD4Q15561 434 aa14.92□□□□□ -0.02
SHH-201ENST00000297261 ZNF181Q2M3W8 571 aa14.92□□□□□ -0.02
SHH-201ENST00000297261 IDNKQ5T6J7 187 aa14.92□□□□□ -0.02
SHH-201ENST00000297261 TXNDC8Q6A555 127 aa14.92□□□□□ -0.02
SHH-201ENST00000297261 MTSS1LQ765P7 747 aa14.92□□□□□ -0.02
SHH-201ENST00000297261 ZNF675Q8TD23 568 aa14.92□□□□□ -0.02
SHH-201ENST00000297261 PDCD10Q9BUL8 212 aa14.92□□□□□ -0.02
SHH-201ENST00000297261 RDH8Q9NYR8 311 aa14.92□□□□□ -0.02
SHH-201ENST00000297261 EVLQ9UI08 416 aaPredicted RBP14.92□□□□□ -0.02
SHH-201ENST00000297261 MRPS23Q9Y3D9 190 aaKnown RBP14.92□□□□□ -0.02
SHH-201ENST00000297261 INSIG1O15503 277 aa14.92□□□□□ -0.02
SHH-201ENST00000297261 RPL3P39023 403 aaKnown RBP14.92□□□□□ -0.02
SHH-201ENST00000297261 ASMTP46597 345 aa14.92□□□□□ -0.02
SHH-201ENST00000297261 NFKB2Q00653 900 aa14.92□□□□□ -0.02
SHH-201ENST00000297261 CACNG1Q06432 222 aa14.92□□□□□ -0.02
SHH-201ENST00000297261 TARDBPQ13148 414 aaKnown RBP eCLIP14.92□□□□□ -0.02
SHH-201ENST00000297261 NUDT18Q6ZVK8 323 aa14.92□□□□□ -0.02
SHH-201ENST00000297261 CHMP1BQ7LBR1 199 aa14.92□□□□□ -0.02
SHH-201ENST00000297261 MAVSQ7Z434 540 aa14.92□□□□□ -0.02
SHH-201ENST00000297261 KCTD7Q96MP8 289 aa14.92□□□□□ -0.02
SHH-201ENST00000297261 PKP4Q99569 1192 aa14.92□□□□□ -0.02
SHH-201ENST00000297261 CPNE5Q9HCH3 593 aa14.92□□□□□ -0.02
SHH-201ENST00000297261 COMMD9Q9P000 198 aa14.92□□□□□ -0.02
SHH-201ENST00000297261 GULP1Q9UBP9 304 aa14.92□□□□□ -0.02
SHH-201ENST00000297261 POU2F3Q9UKI9 436 aa14.92□□□□□ -0.02
SHH-201ENST00000297261 ENTPD4Q9Y227 616 aa14.92□□□□□ -0.02
SHH-201ENST00000297261 PCDHGA8Q9Y5G5 932 aa14.92□□□□□ -0.02
SHH-201ENST00000297261 KIAA0100Q14667 2235 aaKnown RBP14.92□□□□□ -0.02
SHH-201ENST00000297261 C12orf71A8MTZ7 269 aa14.92□□□□□ -0.02
SHH-201ENST00000297261 DNAJB5O75953 348 aa14.92□□□□□ -0.02
SHH-201ENST00000297261 CSF2RAP15509 400 aa14.92□□□□□ -0.02
SHH-201ENST00000297261 PSMD4P55036 377 aaKnown RBP14.92□□□□□ -0.02
SHH-201ENST00000297261 SNRPD2P62316 118 aaKnown RBP14.92□□□□□ -0.02
SHH-201ENST00000297261 EMX2Q04743 252 aa14.92□□□□□ -0.02
SHH-201ENST00000297261 HACD2Q6Y1H2 254 aa14.92□□□□□ -0.02
SHH-201ENST00000297261 SCD5Q86SK9 330 aa14.92□□□□□ -0.02
SHH-201ENST00000297261 TMEM102Q8N9M5 508 aaPredicted RBP14.92□□□□□ -0.02
SHH-201ENST00000297261 RPS6KB2Q9UBS0 482 aa14.92□□□□□ -0.02
SHH-201ENST00000297261 ARSAP15289 507 aa14.92□□□□□ -0.02
SHH-201ENST00000297261 GJA1P17302 382 aa14.92□□□□□ -0.02
SHH-201ENST00000297261 TAS2R41P59536 307 aa14.92□□□□□ -0.02
SHH-201ENST00000297261 GMFBP60983 142 aa14.92□□□□□ -0.02
SHH-201ENST00000297261 UGT8Q16880 541 aa14.92□□□□□ -0.02
SHH-201ENST00000297261 DESI1Q6ICB0 168 aa14.92□□□□□ -0.02
SHH-201ENST00000297261 FAM20CQ8IXL6 584 aa14.92□□□□□ -0.02
SHH-201ENST00000297261 C2orf73Q8N5S3 287 aaPredicted RBP14.92□□□□□ -0.02
SHH-201ENST00000297261 TSPEARQ8WU66 669 aa14.92□□□□□ -0.02
SHH-201ENST00000297261 MCMBPQ9BTE3 642 aa14.92□□□□□ -0.02
SHH-201ENST00000297261 ANKHQ9HCJ1 492 aa14.92□□□□□ -0.02
SHH-201ENST00000297261 TCRBV3S1A0A5B6 114 aa14.91□□□□□ -0.02
SHH-201ENST00000297261 LCHNA4D1U4 455 aa14.91□□□□□ -0.02
SHH-201ENST00000297261 STSP08842 583 aa14.91□□□□□ -0.02
SHH-201ENST00000297261 HTR2BP41595 481 aa14.91□□□□□ -0.02
SHH-201ENST00000297261 SNRPD1P62314 119 aaKnown RBP14.91□□□□□ -0.02
SHH-201ENST00000297261 RPL6Q02878 288 aaKnown RBP14.91□□□□□ -0.02
SHH-201ENST00000297261 RAPSNQ13702 412 aa14.91□□□□□ -0.02
SHH-201ENST00000297261 LRP8Q14114 963 aa14.91□□□□□ -0.02
SHH-201ENST00000297261 TAZQ16635 292 aa14.91□□□□□ -0.02
SHH-201ENST00000297261 SLC39A5Q6ZMH5 540 aa14.91□□□□□ -0.02
SHH-201ENST00000297261 CYP4V2Q6ZWL3 525 aaPredicted RBP14.91□□□□□ -0.02
SHH-201ENST00000297261 CACUL1Q86Y37 369 aa14.91□□□□□ -0.02
SHH-201ENST00000297261 MYO19Q96H55 970 aa14.91□□□□□ -0.02
SHH-201ENST00000297261 CRELD1Q96HD1 420 aa14.91□□□□□ -0.02
SHH-201ENST00000297261 POLR3BQ9NW08 1133 aaPredicted RBP14.91□□□□□ -0.02
SHH-201ENST00000297261 TMEM181Q9P2C4 612 aa14.91□□□□□ -0.02
SHH-201ENST00000297261 FZD4Q9ULV1 537 aa14.91□□□□□ -0.02
SHH-201ENST00000297261 LOC730098B7Z3J9 87 aa14.91□□□□□ -0.02
SHH-201ENST00000297261 OR2B3O76000 313 aa14.91□□□□□ -0.02
SHH-201ENST00000297261 GJB5O95377 273 aa14.91□□□□□ -0.02
SHH-201ENST00000297261 SOX14O95416 240 aa14.91□□□□□ -0.02
SHH-201ENST00000297261 SOD2P04179 222 aa14.91□□□□□ -0.02
SHH-201ENST00000297261 PAGE3Q5JUK9 113 aa14.91□□□□□ -0.02
SHH-201ENST00000297261 ADGRF1Q5T601 910 aa14.91□□□□□ -0.02
SHH-201ENST00000297261 LIN54Q6MZP7 749 aa14.91□□□□□ -0.02
SHH-201ENST00000297261 GALNT10Q86SR1 603 aa14.91□□□□□ -0.02
SHH-201ENST00000297261 MFSD2AQ8NA29 543 aa14.91□□□□□ -0.02
SHH-201ENST00000297261 KREMEN2Q8NCW0 462 aa14.91□□□□□ -0.02
SHH-201ENST00000297261 SLC30A3Q99726 388 aa14.91□□□□□ -0.02
SHH-201ENST00000297261 SPATA5L1Q9BVQ7 753 aa14.91□□□□□ -0.02
SHH-201ENST00000297261 CSNK1G1Q9HCP0 422 aa14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms