RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 STX12Q86Y82 276 aa16.81■□□□□ 0.28
SHANK1-201ENST00000293441 TNFAIP8L1Q8WVP5 186 aa16.81■□□□□ 0.28
SHANK1-201ENST00000293441 TMEM125Q96AQ2 219 aa16.81■□□□□ 0.28
SHANK1-201ENST00000293441 B3GAT2Q9NPZ5 323 aa16.81■□□□□ 0.28
SHANK1-201ENST00000293441 C19orf25Q9UFG5 118 aaPredicted RBP16.81■□□□□ 0.28
SHANK1-201ENST00000293441 MYH2Q9UKX2 1941 aa16.8■□□□□ 0.28
SHANK1-201ENST00000293441 PAK4O96013 591 aaPredicted RBP16.8■□□□□ 0.28
SHANK1-201ENST00000293441 SLC2A7Q6PXP3 512 aa16.8■□□□□ 0.28
SHANK1-201ENST00000293441 QSOX2Q6ZRP7 698 aa16.8■□□□□ 0.28
SHANK1-201ENST00000293441 RPS27LQ71UM5 84 aaKnown RBP16.8■□□□□ 0.28
SHANK1-201ENST00000293441 DCUN1D3Q8IWE4 304 aa16.8■□□□□ 0.28
SHANK1-201ENST00000293441 HPS1Q92902 700 aa16.8■□□□□ 0.28
SHANK1-201ENST00000293441 GORASP1Q9BQQ3 440 aa16.8■□□□□ 0.28
SHANK1-201ENST00000293441 ARHGAP39Q9C0H5 1083 aa16.8■□□□□ 0.28
SHANK1-201ENST00000293441 IL33O95760 270 aa16.8■□□□□ 0.28
SHANK1-201ENST00000293441 DLDP09622 509 aaKnown RBP16.8■□□□□ 0.28
SHANK1-201ENST00000293441 STK19P49842 368 aaPredicted RBP16.8■□□□□ 0.28
SHANK1-201ENST00000293441 IQCCQ4KMZ1 466 aa16.8■□□□□ 0.28
SHANK1-201ENST00000293441 ANKRD26P1Q6NSI1 321 aa16.8■□□□□ 0.28
SHANK1-201ENST00000293441 NATD1Q8N6N6 113 aa16.8■□□□□ 0.28
SHANK1-201ENST00000293441 DENND1AQ8TEH3 1009 aa16.8■□□□□ 0.28
SHANK1-201ENST00000293441 JPH3Q8WXH2 748 aaPredicted RBP16.8■□□□□ 0.28
SHANK1-201ENST00000293441 BORCS5Q969J3 196 aa16.8■□□□□ 0.28
SHANK1-201ENST00000293441 MALT1Q9UDY8 824 aa16.8■□□□□ 0.28
SHANK1-201ENST00000293441 POMPQ9Y244 141 aa16.8■□□□□ 0.28
SHANK1-201ENST00000293441 PUDPQ08623 228 aa16.8■□□□□ 0.28
SHANK1-201ENST00000293441 OGFOD2Q6N063 350 aa16.8■□□□□ 0.28
SHANK1-201ENST00000293441 ZNF676Q8N7Q3 588 aa16.8■□□□□ 0.28
SHANK1-201ENST00000293441 MR1Q95460 341 aa16.8■□□□□ 0.28
SHANK1-201ENST00000293441 NLE1Q9NVX2 485 aaPredicted RBP16.8■□□□□ 0.28
SHANK1-201ENST00000293441 SPEF2Q9C093 1822 aa16.8■□□□□ 0.28
SHANK1-201ENST00000293441 TBX1O43435 398 aa16.8■□□□□ 0.28
SHANK1-201ENST00000293441 RPS21P63220 83 aaKnown RBP16.8■□□□□ 0.28
SHANK1-201ENST00000293441 SLC9A4Q6AI14 798 aa16.8■□□□□ 0.28
SHANK1-201ENST00000293441 AKAP14Q86UN6 197 aa16.8■□□□□ 0.28
SHANK1-201ENST00000293441 CILP2Q8IUL8 1156 aa16.8■□□□□ 0.28
SHANK1-201ENST00000293441 PEBP4Q96S96 227 aa16.8■□□□□ 0.28
SHANK1-201ENST00000293441 EIF1AYO14602 144 aaKnown RBP16.8■□□□□ 0.28
SHANK1-201ENST00000293441 CLEC3AO75596 197 aa16.8■□□□□ 0.28
SHANK1-201ENST00000293441 RPP14O95059 124 aaKnown RBP16.8■□□□□ 0.28
SHANK1-201ENST00000293441 LMAN2Q12907 356 aa16.8■□□□□ 0.28
SHANK1-201ENST00000293441 ZNF805Q5CZA5 627 aa16.8■□□□□ 0.28
SHANK1-201ENST00000293441 GEMIN6Q8WXD5 167 aaKnown RBP16.8■□□□□ 0.28
SHANK1-201ENST00000293441 PIK3R3Q92569 461 aa16.8■□□□□ 0.28
SHANK1-201ENST00000293441 NPY6RQ99463 290 aa16.8■□□□□ 0.28
SHANK1-201ENST00000293441 MEF2AQ02078 507 aaPredicted RBP16.79■□□□□ 0.28
SHANK1-201ENST00000293441 ERN2Q76MJ5 926 aaKnown RBP16.79■□□□□ 0.28
SHANK1-201ENST00000293441 EPYCQ99645 322 aa16.79■□□□□ 0.28
SHANK1-201ENST00000293441 SLC39A3Q9BRY0 314 aa16.79■□□□□ 0.28
SHANK1-201ENST00000293441 C16orf70Q9BSU1 422 aa16.79■□□□□ 0.28
SHANK1-201ENST00000293441 IL21RQ9HBE5 538 aa16.79■□□□□ 0.28
SHANK1-201ENST00000293441 HRASLS2Q9NWW9 162 aa16.79■□□□□ 0.28
SHANK1-201ENST00000293441 HYKKA2RU49 373 aa16.79■□□□□ 0.28
SHANK1-201ENST00000293441 GLOD5A6NK44 160 aa16.79■□□□□ 0.28
SHANK1-201ENST00000293441 SRPRAP08240 638 aaKnown RBP16.79■□□□□ 0.28
SHANK1-201ENST00000293441 IQCF3P0C7M6 154 aa16.79■□□□□ 0.28
SHANK1-201ENST00000293441 FOXN2P32314 431 aa16.79■□□□□ 0.28
SHANK1-201ENST00000293441 DSC3Q14574 896 aa16.79■□□□□ 0.28
SHANK1-201ENST00000293441 ELOCQ15369 112 aa16.79■□□□□ 0.28
SHANK1-201ENST00000293441 LACTB2Q53H82 288 aaPredicted RBP16.79■□□□□ 0.28
SHANK1-201ENST00000293441 C12orf40Q86WS4 652 aa16.79■□□□□ 0.28
SHANK1-201ENST00000293441 TOP1MTQ969P6 601 aa16.79■□□□□ 0.28
SHANK1-201ENST00000293441 DERL2Q9GZP9 239 aa16.79■□□□□ 0.28
SHANK1-201ENST00000293441 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP16.79■□□□□ 0.28
SHANK1-201ENST00000293441 PCDHB3Q9Y5E6 796 aa16.79■□□□□ 0.28
SHANK1-201ENST00000293441 MUSKO15146 869 aa16.79■□□□□ 0.28
SHANK1-201ENST00000293441 SLC22A2O15244 555 aa16.79■□□□□ 0.28
SHANK1-201ENST00000293441 INMTO95050 263 aa16.79■□□□□ 0.28
SHANK1-201ENST00000293441 PGAM2P15259 253 aa16.79■□□□□ 0.28
SHANK1-201ENST00000293441 EDNRAP25101 427 aa16.79■□□□□ 0.28
SHANK1-201ENST00000293441 AQP4P55087 323 aa16.79■□□□□ 0.28
SHANK1-201ENST00000293441 UFM1P61960 85 aa16.79■□□□□ 0.28
SHANK1-201ENST00000293441 TUBGCP5Q96RT8 1024 aa16.79■□□□□ 0.28
SHANK1-201ENST00000293441 GPR62Q9BZJ7 368 aa16.79■□□□□ 0.28
SHANK1-201ENST00000293441 STRADBQ9C0K7 418 aa16.79■□□□□ 0.28
SHANK1-201ENST00000293441 IL23AQ9NPF7 189 aa16.79■□□□□ 0.28
SHANK1-201ENST00000293441 NCDNQ9UBB6 729 aa16.79■□□□□ 0.28
SHANK1-201ENST00000293441 SNX4O95219 450 aa16.79■□□□□ 0.28
SHANK1-201ENST00000293441 PGLSO95336 258 aa16.79■□□□□ 0.28
SHANK1-201ENST00000293441 ETV3P41162 512 aa16.79■□□□□ 0.28
SHANK1-201ENST00000293441 SIAH1Q8IUQ4 282 aa16.79■□□□□ 0.28
SHANK1-201ENST00000293441 LGI4Q8N135 537 aa16.79■□□□□ 0.28
SHANK1-201ENST00000293441 NAXEQ8NCW5 288 aa16.79■□□□□ 0.28
SHANK1-201ENST00000293441 ZNF41P51814 821 aaPredicted RBP16.79■□□□□ 0.28
SHANK1-201ENST00000293441 CEBPGP53567 150 aa16.79■□□□□ 0.28
SHANK1-201ENST00000293441 INCA1Q0VD86 236 aa16.79■□□□□ 0.28
SHANK1-201ENST00000293441 KLHL36Q8N4N3 616 aa16.79■□□□□ 0.28
SHANK1-201ENST00000293441 PCYT2Q99447 389 aa16.79■□□□□ 0.28
SHANK1-201ENST00000293441 TNFRSF10BO14763 440 aa16.78■□□□□ 0.28
SHANK1-201ENST00000293441 TACSTD2P09758 323 aa16.78■□□□□ 0.28
SHANK1-201ENST00000293441 CCNOP22674 350 aa16.78■□□□□ 0.28
SHANK1-201ENST00000293441 GGT5P36269 586 aa16.78■□□□□ 0.28
SHANK1-201ENST00000293441 VSX2P58304 361 aaPredicted RBP16.78■□□□□ 0.28
SHANK1-201ENST00000293441 KHDC1Q4VXA5 237 aaKnown RBP16.78■□□□□ 0.28
SHANK1-201ENST00000293441 MMABQ96EY8 250 aaPredicted RBP16.78■□□□□ 0.28
SHANK1-201ENST00000293441 SLC29A3Q9BZD2 475 aa16.78■□□□□ 0.28
SHANK1-201ENST00000293441 SNTG1Q9NSN8 517 aa16.78■□□□□ 0.28
SHANK1-201ENST00000293441 TRBC2A0A5B9 178 aa16.78■□□□□ 0.28
SHANK1-201ENST00000293441 FAM221BA6H8Z2 402 aa16.78■□□□□ 0.28
SHANK1-201ENST00000293441 H3BSH0 61 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms