RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 GPRC5BQ9NZH0 403 aa12.2□□□□□ -0.46
SS18-202ENST00000269138 GRID1Q9ULK0 1009 aa12.2□□□□□ -0.46
SS18-202ENST00000269138 APC2O95996 2303 aa12.2□□□□□ -0.46
SS18-202ENST00000269138 FREM2Q5SZK8 3169 aa12.19□□□□□ -0.46
SS18-202ENST00000269138 G3V2L1 256 aa12.19□□□□□ -0.46
SS18-202ENST00000269138 STMND1H3BQB6 276 aa12.19□□□□□ -0.46
SS18-202ENST00000269138 STX16-NPEPL1H3BU86 382 aa12.19□□□□□ -0.46
SS18-202ENST00000269138 STX16O14662 325 aa12.19□□□□□ -0.46
SS18-202ENST00000269138 CLGNO14967 610 aa12.19□□□□□ -0.46
SS18-202ENST00000269138 ZSCAN9O15535 394 aaPredicted RBP12.19□□□□□ -0.46
SS18-202ENST00000269138 P2RX6O15547 441 aa12.19□□□□□ -0.46
SS18-202ENST00000269138 OR1F1O43749 312 aa12.19□□□□□ -0.46
SS18-202ENST00000269138 RAD1O60671 282 aa12.19□□□□□ -0.46
SS18-202ENST00000269138 SRPX2O60687 465 aaPredicted RBP12.19□□□□□ -0.46
SS18-202ENST00000269138 MED26O95402 600 aa12.19□□□□□ -0.46
SS18-202ENST00000269138 CD22P20273 847 aa12.19□□□□□ -0.46
SS18-202ENST00000269138 CD82P27701 267 aa12.19□□□□□ -0.46
SS18-202ENST00000269138 SNRPNP63162 240 aaKnown RBP12.19□□□□□ -0.46
SS18-202ENST00000269138 REEP5Q00765 189 aa12.19□□□□□ -0.46
SS18-202ENST00000269138 GPS2Q13227 327 aa12.19□□□□□ -0.46
SS18-202ENST00000269138 DOC2AQ14183 400 aa12.19□□□□□ -0.46
SS18-202ENST00000269138 HKDC1Q2TB90 917 aa12.19□□□□□ -0.46
SS18-202ENST00000269138 PRTGQ2VWP7 1150 aa12.19□□□□□ -0.46
SS18-202ENST00000269138 TNFAIP8L3Q5GJ75 292 aa12.19□□□□□ -0.46
SS18-202ENST00000269138 ATG9BQ674R7 924 aa12.19□□□□□ -0.46
SS18-202ENST00000269138 GOLGA7Q7Z5G4 137 aa12.19□□□□□ -0.46
SS18-202ENST00000269138 DTX1Q86Y01 620 aa12.19□□□□□ -0.46
SS18-202ENST00000269138 DTWD1Q8N5C7 304 aa12.19□□□□□ -0.46
SS18-202ENST00000269138 APOPT1Q96IL0 206 aa12.19□□□□□ -0.46
SS18-202ENST00000269138 NSUN5Q96P11 429 aaKnown RBP12.19□□□□□ -0.46
SS18-202ENST00000269138 ACTR5Q9H9F9 607 aaPredicted RBP12.19□□□□□ -0.46
SS18-202ENST00000269138 GEMIN8Q9NWZ8 242 aaKnown RBP12.19□□□□□ -0.46
SS18-202ENST00000269138 TMCO1Q9UM00 188 aa12.19□□□□□ -0.46
SS18-202ENST00000269138 PLLPQ9Y342 182 aa12.19□□□□□ -0.46
SS18-202ENST00000269138 PCDHB3Q9Y5E6 796 aa12.19□□□□□ -0.46
SS18-202ENST00000269138 PCDHGA4Q9Y5G9 962 aa12.19□□□□□ -0.46
SS18-202ENST00000269138 TNPO3Q9Y5L0 923 aaKnown RBP12.19□□□□□ -0.46
SS18-202ENST00000269138 SDK2Q58EX2 2172 aa12.19□□□□□ -0.46
SS18-202ENST00000269138 AHCTF1Q8WYP5 2266 aa12.19□□□□□ -0.46
SS18-202ENST00000269138 WDFY3Q8IZQ1 3526 aa12.19□□□□□ -0.46
SS18-202ENST00000269138 HEATR5BQ9P2D3 2071 aa12.19□□□□□ -0.46
SS18-202ENST00000269138 KCNE1BA0A087WTH5 132 aa12.18□□□□□ -0.46
SS18-202ENST00000269138 TRBC2A0A5B9 178 aa12.18□□□□□ -0.46
SS18-202ENST00000269138 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.18□□□□□ -0.46
SS18-202ENST00000269138 E2F3O00716 465 aa12.18□□□□□ -0.46
SS18-202ENST00000269138 CPNE3O75131 537 aaKnown RBP12.18□□□□□ -0.46
SS18-202ENST00000269138 ATXN8OSP0DMR3 200 aa12.18□□□□□ -0.46
SS18-202ENST00000269138 EPB42P16452 691 aa12.18□□□□□ -0.46
SS18-202ENST00000269138 TAC1P20366 129 aa12.18□□□□□ -0.46
SS18-202ENST00000269138 ATP5F1P24539 256 aaPredicted RBP12.18□□□□□ -0.46
SS18-202ENST00000269138 GRK3P35626 688 aa12.18□□□□□ -0.46
SS18-202ENST00000269138 GCGRP47871 477 aa12.18□□□□□ -0.46
SS18-202ENST00000269138 RPS15AP62244 130 aaKnown RBP12.18□□□□□ -0.46
SS18-202ENST00000269138 CHIT1Q13231 466 aa12.18□□□□□ -0.46
SS18-202ENST00000269138 SRSF6Q13247 344 aaKnown RBP12.18□□□□□ -0.46
SS18-202ENST00000269138 CLN3Q13286 438 aa12.18□□□□□ -0.46
SS18-202ENST00000269138 GTF2H2Q13888 395 aa12.18□□□□□ -0.46
SS18-202ENST00000269138 SLBPQ14493 270 aaKnown RBP eCLIP12.18□□□□□ -0.46
SS18-202ENST00000269138 XKR6Q5GH73 641 aa12.18□□□□□ -0.46
SS18-202ENST00000269138 TCTE1Q5JU00 501 aa12.18□□□□□ -0.46
SS18-202ENST00000269138 C1orf189Q5VU69 101 aa12.18□□□□□ -0.46
SS18-202ENST00000269138 LCN10Q6JVE6 187 aa12.18□□□□□ -0.46
SS18-202ENST00000269138 GTF2H2CQ6P1K8 395 aa12.18□□□□□ -0.46
SS18-202ENST00000269138 TLDC1Q6P9B6 456 aa12.18□□□□□ -0.46
SS18-202ENST00000269138 C6orf15Q6UXA7 325 aaPredicted RBP12.18□□□□□ -0.46
SS18-202ENST00000269138 ZYG11AQ6WRX3 759 aa12.18□□□□□ -0.46
SS18-202ENST00000269138 EXOC3L1Q86VI1 746 aa12.18□□□□□ -0.46
SS18-202ENST00000269138 PROSER1Q86XN7 944 aa12.18□□□□□ -0.46
SS18-202ENST00000269138 CSNK1A1LQ8N752 337 aa12.18□□□□□ -0.46
SS18-202ENST00000269138 ANKRD53Q8N9V6 530 aa12.18□□□□□ -0.46
SS18-202ENST00000269138 MFSD9Q8NBP5 474 aa12.18□□□□□ -0.46
SS18-202ENST00000269138 NKD1Q969G9 470 aa12.18□□□□□ -0.46
SS18-202ENST00000269138 CLIP3Q96DZ5 547 aa12.18□□□□□ -0.46
SS18-202ENST00000269138 DCBLD2Q96PD2 775 aa12.18□□□□□ -0.46
SS18-202ENST00000269138 SMC6Q96SB8 1091 aa12.18□□□□□ -0.46
SS18-202ENST00000269138 AIF1LQ9BQI0 150 aa12.18□□□□□ -0.46
SS18-202ENST00000269138 CAPS2Q9BXY5 557 aa12.18□□□□□ -0.46
SS18-202ENST00000269138 WDR70Q9NW82 654 aa12.18□□□□□ -0.46
SS18-202ENST00000269138 MKS1Q9NXB0 559 aa12.18□□□□□ -0.46
SS18-202ENST00000269138 SLC17A7Q9P2U7 560 aa12.18□□□□□ -0.46
SS18-202ENST00000269138 DHCR7Q9UBM7 475 aaKnown RBP12.18□□□□□ -0.46
SS18-202ENST00000269138 PCTPQ9UKL6 214 aa12.18□□□□□ -0.46
SS18-202ENST00000269138 ANGPTL3Q9Y5C1 460 aa12.18□□□□□ -0.46
SS18-202ENST00000269138 ASPMQ8IZT6 3477 aa12.18□□□□□ -0.46
SS18-202ENST00000269138 FITM1A5D6W6 292 aa12.17□□□□□ -0.46
SS18-202ENST00000269138 TMEM8BA6NDV4 472 aa12.17□□□□□ -0.46
SS18-202ENST00000269138 AGPSO00116 658 aa12.17□□□□□ -0.46
SS18-202ENST00000269138 H2AFYO75367 372 aaKnown RBP12.17□□□□□ -0.46
SS18-202ENST00000269138 RPS17P08708 135 aaKnown RBP12.17□□□□□ -0.46
SS18-202ENST00000269138 LIPCP11150 499 aa12.17□□□□□ -0.46
SS18-202ENST00000269138 TSPAN8P19075 237 aa12.17□□□□□ -0.46
SS18-202ENST00000269138 RORAP35398 523 aa12.17□□□□□ -0.46
SS18-202ENST00000269138 EIF2S3P41091 472 aaKnown RBP12.17□□□□□ -0.46
SS18-202ENST00000269138 SCTRP47872 440 aa12.17□□□□□ -0.46
SS18-202ENST00000269138 PRKAA2P54646 552 aa12.17□□□□□ -0.46
SS18-202ENST00000269138 CDH13P55290 713 aa12.17□□□□□ -0.46
SS18-202ENST00000269138 NFKB2Q00653 900 aa12.17□□□□□ -0.46
SS18-202ENST00000269138 IRF8Q02556 426 aa12.17□□□□□ -0.46
SS18-202ENST00000269138 GRM7Q14831 915 aa12.17□□□□□ -0.46
SS18-202ENST00000269138 RBBP5Q15291 538 aaKnown RBP12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms