RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 DNAJC22Q8N4W6 341 aa13.92□□□□□ -0.18
SDC1-201ENST00000254351 DEDD2Q8WXF8 326 aa13.92□□□□□ -0.18
SDC1-201ENST00000254351 MED30Q96HR3 178 aa13.92□□□□□ -0.18
SDC1-201ENST00000254351 VPS35Q96QK1 796 aa13.92□□□□□ -0.18
SDC1-201ENST00000254351 MCCC1Q96RQ3 725 aaPredicted RBP13.92□□□□□ -0.18
SDC1-201ENST00000254351 RTP3Q9BQQ7 232 aa13.92□□□□□ -0.18
SDC1-201ENST00000254351 SMURF1Q9HCE7 757 aa13.92□□□□□ -0.18
SDC1-201ENST00000254351 CLEC2DQ9UHP7 191 aa13.92□□□□□ -0.18
SDC1-201ENST00000254351 CLIC1O00299 241 aa13.92□□□□□ -0.18
SDC1-201ENST00000254351 CDK1P06493 297 aa13.92□□□□□ -0.18
SDC1-201ENST00000254351 THP07101 528 aa13.92□□□□□ -0.18
SDC1-201ENST00000254351 CLEC2LP0C7M8 214 aa13.92□□□□□ -0.18
SDC1-201ENST00000254351 MYL9P24844 172 aa13.92□□□□□ -0.18
SDC1-201ENST00000254351 TBX4P57082 545 aa13.92□□□□□ -0.18
SDC1-201ENST00000254351 ZNF33AQ06730 810 aa13.92□□□□□ -0.18
SDC1-201ENST00000254351 PYDC2Q56P42 97 aa13.92□□□□□ -0.18
SDC1-201ENST00000254351 MANEALQ5VSG8 457 aa13.92□□□□□ -0.18
SDC1-201ENST00000254351 OTOP2Q7RTS6 562 aa13.92□□□□□ -0.18
SDC1-201ENST00000254351 KLHDC8BQ8IXV7 354 aa13.92□□□□□ -0.18
SDC1-201ENST00000254351 IPCEF1Q8WWN9 437 aaPredicted RBP13.92□□□□□ -0.18
SDC1-201ENST00000254351 CPPED1Q9BRF8 314 aaPredicted RBP13.92□□□□□ -0.18
SDC1-201ENST00000254351 BARHL1Q9BZE3 327 aa13.92□□□□□ -0.18
SDC1-201ENST00000254351 C11orf54Q9H0W9 315 aaPredicted RBP13.92□□□□□ -0.18
SDC1-201ENST00000254351 PPT2Q9UMR5 302 aa13.92□□□□□ -0.18
SDC1-201ENST00000254351 ITM2BQ9Y287 266 aa13.92□□□□□ -0.18
SDC1-201ENST00000254351 STX7O15400 261 aaKnown RBP13.91□□□□□ -0.18
SDC1-201ENST00000254351 AP2A2O94973 939 aa13.91□□□□□ -0.18
SDC1-201ENST00000254351 NRIP1P48552 1158 aa13.91□□□□□ -0.18
SDC1-201ENST00000254351 RPS14P62263 151 aaKnown RBP13.91□□□□□ -0.18
SDC1-201ENST00000254351 POU6F2P78424 691 aaPredicted RBP13.91□□□□□ -0.18
SDC1-201ENST00000254351 ZC3H12BQ5HYM0 836 aaKnown RBP13.91□□□□□ -0.18
SDC1-201ENST00000254351 FAM151BQ6UXP7 276 aa13.91□□□□□ -0.18
SDC1-201ENST00000254351 BPHLQ86WA6 291 aaPredicted RBP13.91□□□□□ -0.18
SDC1-201ENST00000254351 SELENOMQ8WWX9 145 aa13.91□□□□□ -0.18
SDC1-201ENST00000254351 SLC7A6Q92536 515 aa13.91□□□□□ -0.18
SDC1-201ENST00000254351 DIRAS2Q96HU8 199 aa13.91□□□□□ -0.18
SDC1-201ENST00000254351 HDHD5Q9BXW7 423 aa13.91□□□□□ -0.18
SDC1-201ENST00000254351 SERHLQ9NQF3 203 aa13.91□□□□□ -0.18
SDC1-201ENST00000254351 LOC285556D6RIA3 1793 aa13.91□□□□□ -0.18
SDC1-201ENST00000254351 A0A0B4J293 547 aa13.91□□□□□ -0.18
SDC1-201ENST00000254351 KCNE1P15382 129 aa13.91□□□□□ -0.18
SDC1-201ENST00000254351 KDELR2P33947 212 aa13.91□□□□□ -0.18
SDC1-201ENST00000254351 CXCR4P61073 352 aa13.91□□□□□ -0.18
SDC1-201ENST00000254351 BEX3Q00994 111 aa13.91□□□□□ -0.18
SDC1-201ENST00000254351 VEPH1Q14D04 833 aa13.91□□□□□ -0.18
SDC1-201ENST00000254351 CCDC190Q86UF4 302 aa13.91□□□□□ -0.18
SDC1-201ENST00000254351 SPATA2LQ8IUW3 424 aaPredicted RBP13.91□□□□□ -0.18
SDC1-201ENST00000254351 GPR65Q8IYL9 337 aa13.91□□□□□ -0.18
SDC1-201ENST00000254351 SLC34A3Q8N130 599 aa13.91□□□□□ -0.18
SDC1-201ENST00000254351 RNF31Q96EP0 1072 aa13.91□□□□□ -0.18
SDC1-201ENST00000254351 PRRC2BQ5JSZ5 2229 aaKnown RBP13.91□□□□□ -0.18
SDC1-201ENST00000254351 FAM25AB3EWG3 89 aa13.9□□□□□ -0.18
SDC1-201ENST00000254351 FAM25CB3EWG5 89 aa13.9□□□□□ -0.18
SDC1-201ENST00000254351 FAM25GB3EWG6 89 aa13.9□□□□□ -0.18
SDC1-201ENST00000254351 IFRD1O00458 451 aaPredicted RBP13.9□□□□□ -0.18
SDC1-201ENST00000254351 FPGTO14772 594 aa13.9□□□□□ -0.18
SDC1-201ENST00000254351 CCNDBP1O95273 360 aa13.9□□□□□ -0.18
SDC1-201ENST00000254351 FGF1P05230 155 aa13.9□□□□□ -0.18
SDC1-201ENST00000254351 MMP3P08254 477 aa13.9□□□□□ -0.18
SDC1-201ENST00000254351 PCSK1P29120 753 aa13.9□□□□□ -0.18
SDC1-201ENST00000254351 UGT2B10P36537 528 aa13.9□□□□□ -0.18
SDC1-201ENST00000254351 DDOSTP39656 456 aa13.9□□□□□ -0.18
SDC1-201ENST00000254351 ZNF79Q15937 498 aa13.9□□□□□ -0.18
SDC1-201ENST00000254351 PARP15Q460N3 678 aa13.9□□□□□ -0.18
SDC1-201ENST00000254351 PDZK1Q5T2W1 519 aa13.9□□□□□ -0.18
SDC1-201ENST00000254351 ST13P5Q8NFI4 369 aaPredicted RBP13.9□□□□□ -0.18
SDC1-201ENST00000254351 CLMPQ9H6B4 373 aa13.9□□□□□ -0.18
SDC1-201ENST00000254351 C11orf16Q9NQ32 467 aa13.9□□□□□ -0.18
SDC1-201ENST00000254351 DYRK4Q9NR20 520 aa13.9□□□□□ -0.18
SDC1-201ENST00000254351 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.9□□□□□ -0.18
SDC1-201ENST00000254351 C2orf81A6NN90 581 aa13.9□□□□□ -0.18
SDC1-201ENST00000254351 CBX4O00257 560 aa13.9□□□□□ -0.18
SDC1-201ENST00000254351 TNFRSF11BO00300 401 aa13.9□□□□□ -0.18
SDC1-201ENST00000254351 TAPBPO15533 448 aa13.9□□□□□ -0.18
SDC1-201ENST00000254351 SOX14O95416 240 aa13.9□□□□□ -0.18
SDC1-201ENST00000254351 PRAMEF12O95522 483 aa13.9□□□□□ -0.18
SDC1-201ENST00000254351 PDYNP01213 254 aa13.9□□□□□ -0.18
SDC1-201ENST00000254351 POU3F3P20264 500 aaPredicted RBP13.9□□□□□ -0.18
SDC1-201ENST00000254351 EFR3AQ14156 821 aa13.9□□□□□ -0.18
SDC1-201ENST00000254351 SLC39A12Q504Y0 691 aa13.9□□□□□ -0.18
SDC1-201ENST00000254351 YIF1BQ5BJH7 314 aa13.9□□□□□ -0.18
SDC1-201ENST00000254351 ARMC12Q5T9G4 340 aa13.9□□□□□ -0.18
SDC1-201ENST00000254351 FAM180BQ6P0A1 224 aa13.9□□□□□ -0.18
SDC1-201ENST00000254351 PAQR6Q6TCH4 344 aa13.9□□□□□ -0.18
SDC1-201ENST00000254351 ENKURQ8TC29 256 aa13.9□□□□□ -0.18
SDC1-201ENST00000254351 LKAAEAR1Q8TD35 194 aa13.9□□□□□ -0.18
SDC1-201ENST00000254351 ASB15Q8WXK1 588 aa13.9□□□□□ -0.18
SDC1-201ENST00000254351 TRIM63Q969Q1 353 aa13.9□□□□□ -0.18
SDC1-201ENST00000254351 TMCO6Q96DC7 493 aa13.9□□□□□ -0.18
SDC1-201ENST00000254351 COPS8Q99627 209 aa13.9□□□□□ -0.18
SDC1-201ENST00000254351 ACPTQ9BZG2 426 aa13.9□□□□□ -0.18
SDC1-201ENST00000254351 TMPRSS11EQ9UL52 423 aa13.9□□□□□ -0.18
SDC1-201ENST00000254351 PLXNA1Q9UIW2 1896 aa13.9□□□□□ -0.18
SDC1-201ENST00000254351 ESR1P03372 595 aa13.9□□□□□ -0.18
SDC1-201ENST00000254351 TSPAN19P0C672 248 aa13.9□□□□□ -0.18
SDC1-201ENST00000254351 OGNP20774 298 aaKnown RBP13.9□□□□□ -0.18
SDC1-201ENST00000254351 SPIBQ01892 262 aa13.9□□□□□ -0.18
SDC1-201ENST00000254351 EIF3MQ7L2H7 374 aaKnown RBP13.9□□□□□ -0.18
SDC1-201ENST00000254351 APIPQ96GX9 242 aa13.9□□□□□ -0.18
SDC1-201ENST00000254351 SERPINB11Q96P15 392 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms