RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 NSG1P42857 185 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 MEF2AQ02078 507 aaPredicted RBP8.37□□□□□ -1.07
VPS4B-201ENST00000238497 IRF8Q02556 426 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 INPP5AQ14642 412 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 IRF4Q15306 451 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 GTDC1Q4AE62 458 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 RAET1GQ6H3X3 334 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 CYP20A1Q6UW02 462 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 Q6ZSR9 355 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 PARGQ86W56 976 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 CFAP206Q8IYR0 622 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 ST13P4Q8IZP2 240 aaPredicted RBP8.37□□□□□ -1.07
VPS4B-201ENST00000238497 PELI3Q8N2H9 469 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 PHC3Q8NDX5 983 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 OR10A6Q8NH74 314 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 MAGEE2Q8TD90 523 aaPredicted RBP8.37□□□□□ -1.07
VPS4B-201ENST00000238497 SCRN2Q96FV2 425 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 EGLN2Q96KS0 407 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 ZNF641Q96N77 438 aaPredicted RBP8.37□□□□□ -1.07
VPS4B-201ENST00000238497 TSC22D3Q99576 134 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 CENPKQ9BS16 269 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 C1QTNF2Q9BXJ5 285 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 CORO1CQ9ULV4 474 aaPredicted RBP8.37□□□□□ -1.07
VPS4B-201ENST00000238497 PCDHB1Q9Y5F3 818 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 PCDHGB2Q9Y5G2 931 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 AP1G1O43747 822 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 CBFA2T3O75081 653 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 RECQL5O94762 991 aaPredicted RBP8.37□□□□□ -1.07
VPS4B-201ENST00000238497 SLC26A3P40879 764 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 HNF4AP41235 474 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 SHBQ15464 509 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 CDKN3Q16667 212 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 SPANXN4Q5MJ08 99 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 TMEM220Q6QAJ8 160 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 SBSNQ6UWP8 590 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 GALNT10Q86SR1 603 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 SLC22A18ASQ8N1D0 253 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 TRIML2Q8N7C3 387 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 SPDYE1Q8NFV5 336 aaPredicted RBP8.37□□□□□ -1.07
VPS4B-201ENST00000238497 MCOLN3Q8TDD5 553 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 ZCCHC14Q8WYQ9 949 aaKnown RBP8.37□□□□□ -1.07
VPS4B-201ENST00000238497 MAELQ96JY0 434 aaKnown RBP8.37□□□□□ -1.07
VPS4B-201ENST00000238497 SLC29A1Q99808 456 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 CPEB1Q9BZB8 566 aaKnown RBP8.37□□□□□ -1.07
VPS4B-201ENST00000238497 GRIP2Q9C0E4 1043 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 ALG2Q9H553 416 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 CMTM6Q9NX76 183 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 EIF3LQ9Y262 564 aaKnown RBP8.37□□□□□ -1.07
VPS4B-201ENST00000238497 HS3ST3A1Q9Y663 406 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 MUC22E2RYF6 1773 aaPredicted RBP8.37□□□□□ -1.07
VPS4B-201ENST00000238497 SPTA1P02549 2419 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 DMXL2Q8TDJ6 3036 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 DHRS12A0PJE2 317 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 PIAS2O75928 621 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 BCAS2O75934 225 aaPredicted RBP8.37□□□□□ -1.07
VPS4B-201ENST00000238497 PSMA4P25789 261 aaKnown RBP8.37□□□□□ -1.07
VPS4B-201ENST00000238497 IL12AP29459 219 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 IGFALSP35858 605 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 CSRP3P50461 194 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 MAPK10P53779 464 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 NFKB2Q00653 900 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 TLR1Q15399 786 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 SLC14A2Q15849 920 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 MAPKAPK3Q16644 382 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 CCSMST1Q4G0I0 132 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 XKR6Q5GH73 641 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 TPRG1LQ5T0D9 272 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 KANK2Q63ZY3 851 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 SUSD1Q6UWL2 747 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 ZBTB46Q86UZ6 589 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 PDSS2Q86YH6 399 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 OFCC1Q8IZS5 231 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 TCEAL2Q9H3H9 227 aaPredicted RBP8.37□□□□□ -1.07
VPS4B-201ENST00000238497 OSGEPL1Q9H4B0 414 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 Q9H521 79 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 DKK3Q9UBP4 350 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 TMEM98Q9Y2Y6 226 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 TNPO3Q9Y5L0 923 aaKnown RBP8.37□□□□□ -1.07
VPS4B-201ENST00000238497 UNC13CQ8NB66 2214 aa8.37□□□□□ -1.07
VPS4B-201ENST00000238497 CACNB4O00305 520 aaPredicted RBP8.36□□□□□ -1.07
VPS4B-201ENST00000238497 OR6B1O95007 311 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 RASGRP1O95267 797 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 STATHP02808 62 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 ANXA6P08133 673 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 EEF1B2P24534 225 aaKnown RBP8.36□□□□□ -1.07
VPS4B-201ENST00000238497 BDKRB1P46663 353 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 GSK3BP49841 420 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 CTSCP53634 463 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 CHIT1Q13231 466 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 LAPTM5Q13571 262 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 FZD2Q14332 565 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 PLCL1Q15111 1095 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 WSCD2Q2TBF2 565 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.36□□□□□ -1.07
VPS4B-201ENST00000238497 TMEM214Q6NUQ4 689 aaKnown RBP8.36□□□□□ -1.07
VPS4B-201ENST00000238497 ABI3BPQ7Z7G0 1075 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 C11orf96Q7Z7L8 435 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 RAVER1Q8IY67 606 aaKnown RBP8.36□□□□□ -1.07
VPS4B-201ENST00000238497 CLEC4FQ8N1N0 589 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 SLC25A45Q8N413 288 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms