RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 C1orf50Q9BV19 199 aa17.73■□□□□ 0.43
CLN3-254ENST00000637050 PITHD1Q9GZP4 211 aaPredicted RBP17.73■□□□□ 0.43
CLN3-254ENST00000637050 LRMDAQ9H2I8 198 aa17.73■□□□□ 0.43
CLN3-254ENST00000637050 ASIC5Q9NY37 505 aa17.73■□□□□ 0.43
CLN3-254ENST00000637050 NOP53Q9NZM5 478 aaKnown RBP17.73■□□□□ 0.43
CLN3-254ENST00000637050 SUSD2Q9UGT4 822 aa17.73■□□□□ 0.43
CLN3-254ENST00000637050 IGKV1-8A0A0C4DH67 115 aa17.72■□□□□ 0.43
CLN3-254ENST00000637050 LOC100653049A0A140TA62 436 aa17.72■□□□□ 0.43
CLN3-254ENST00000637050 FAM221BA6H8Z2 402 aa17.72■□□□□ 0.43
CLN3-254ENST00000637050 MAGEB17A8MXT2 336 aa17.72■□□□□ 0.43
CLN3-254ENST00000637050 B4DGG1 531 aa17.72■□□□□ 0.43
CLN3-254ENST00000637050 LMO7DNF2Z398 122 aa17.72■□□□□ 0.43
CLN3-254ENST00000637050 H7BY64 318 aa17.72■□□□□ 0.43
CLN3-254ENST00000637050 FOXE1O00358 373 aaPredicted RBP17.72■□□□□ 0.43
CLN3-254ENST00000637050 SEC22BO75396 215 aa17.72■□□□□ 0.43
CLN3-254ENST00000637050 PIAS2O75928 621 aa17.72■□□□□ 0.43
CLN3-254ENST00000637050 DNAJC8O75937 253 aaPredicted RBP17.72■□□□□ 0.43
CLN3-254ENST00000637050 KRT34O76011 436 aa17.72■□□□□ 0.43
CLN3-254ENST00000637050 CXCR2P25025 360 aa17.72■□□□□ 0.43
CLN3-254ENST00000637050 PTPN4P29074 926 aa17.72■□□□□ 0.43
CLN3-254ENST00000637050 CNR2P34972 360 aa17.72■□□□□ 0.43
CLN3-254ENST00000637050 CPA2P48052 419 aa17.72■□□□□ 0.43
CLN3-254ENST00000637050 MNAT1P51948 309 aa17.72■□□□□ 0.43
CLN3-254ENST00000637050 RPL38P63173 70 aaKnown RBP17.72■□□□□ 0.43
CLN3-254ENST00000637050 REEP5Q00765 189 aa17.72■□□□□ 0.43
CLN3-254ENST00000637050 DDX39BQ13838 428 aaKnown RBP17.72■□□□□ 0.43
CLN3-254ENST00000637050 ZNF423Q2M1K9 1284 aa17.72■□□□□ 0.43
CLN3-254ENST00000637050 SNX32Q86XE0 403 aa17.72■□□□□ 0.43
CLN3-254ENST00000637050 OR2L3Q8NG85 312 aa17.72■□□□□ 0.43
CLN3-254ENST00000637050 KLHL29Q96CT2 875 aa17.72■□□□□ 0.43
CLN3-254ENST00000637050 PRAP1Q96NZ9 151 aa17.72■□□□□ 0.43
CLN3-254ENST00000637050 NT5DC2Q9H857 520 aa17.72■□□□□ 0.43
CLN3-254ENST00000637050 MRPS30Q9NP92 439 aaKnown RBP17.72■□□□□ 0.43
CLN3-254ENST00000637050 DOLKQ9UPQ8 538 aa17.72■□□□□ 0.43
CLN3-254ENST00000637050 GON4LQ3T8J9 2241 aa17.72■□□□□ 0.43
CLN3-254ENST00000637050 TP53BP1Q12888 1972 aaPredicted RBP17.72■□□□□ 0.43
CLN3-254ENST00000637050 SPAG17Q6Q759 2223 aa17.71■□□□□ 0.43
CLN3-254ENST00000637050 CCNDBP1O95273 360 aa17.71■□□□□ 0.43
CLN3-254ENST00000637050 PIK3CBP42338 1070 aa17.71■□□□□ 0.43
CLN3-254ENST00000637050 CSNK1G2P78368 415 aa17.71■□□□□ 0.43
CLN3-254ENST00000637050 BNC1Q01954 994 aa17.71■□□□□ 0.43
CLN3-254ENST00000637050 HHEXQ03014 270 aa17.71■□□□□ 0.43
CLN3-254ENST00000637050 CYLC2Q14093 348 aaPredicted RBP17.71■□□□□ 0.43
CLN3-254ENST00000637050 KIR2DS3Q14952 304 aa17.71■□□□□ 0.43
CLN3-254ENST00000637050 RPS6KA2Q15349 733 aa17.71■□□□□ 0.43
CLN3-254ENST00000637050 ZNF528Q3MIS6 628 aa17.71■□□□□ 0.43
CLN3-254ENST00000637050 PDCD4Q53EL6 469 aaKnown RBP17.71■□□□□ 0.43
CLN3-254ENST00000637050 AGKQ53H12 422 aa17.71■□□□□ 0.43
CLN3-254ENST00000637050 IL23RQ5VWK5 629 aa17.71■□□□□ 0.43
CLN3-254ENST00000637050 PAOXQ6QHF9 649 aa17.71■□□□□ 0.43
CLN3-254ENST00000637050 RINLQ6ZS11 566 aa17.71■□□□□ 0.43
CLN3-254ENST00000637050 TMEM26Q6ZUK4 368 aa17.71■□□□□ 0.43
CLN3-254ENST00000637050 PARP9Q8IXQ6 854 aa17.71■□□□□ 0.43
CLN3-254ENST00000637050 AVL9Q8NBF6 648 aa17.71■□□□□ 0.43
CLN3-254ENST00000637050 SLC22A18Q96BI1 424 aa17.71■□□□□ 0.43
CLN3-254ENST00000637050 VPS29Q9UBQ0 182 aa17.71■□□□□ 0.43
CLN3-254ENST00000637050 RRP15Q9Y3B9 282 aaKnown RBP17.71■□□□□ 0.43
CLN3-254ENST00000637050 SNX11Q9Y5W9 270 aa17.71■□□□□ 0.43
CLN3-254ENST00000637050 TDRD6O60522 2096 aaKnown RBP17.71■□□□□ 0.43
CLN3-254ENST00000637050 ISM1B1AKI9 464 aa17.71■□□□□ 0.42
CLN3-254ENST00000637050 B2RBV5 119 aa17.71■□□□□ 0.42
CLN3-254ENST00000637050 CMPK1P30085 196 aa17.71■□□□□ 0.42
CLN3-254ENST00000637050 FASLGP48023 281 aa17.71■□□□□ 0.42
CLN3-254ENST00000637050 MAPRE2Q15555 327 aa17.71■□□□□ 0.42
CLN3-254ENST00000637050 SF1Q15637 639 aaKnown RBP17.71■□□□□ 0.42
CLN3-254ENST00000637050 CHCHD2P9Q5T1J5 151 aaPredicted RBP17.71■□□□□ 0.42
CLN3-254ENST00000637050 PEAR1Q5VY43 1037 aaPredicted RBP17.71■□□□□ 0.42
CLN3-254ENST00000637050 OGFOD3Q6PK18 319 aa17.71■□□□□ 0.42
CLN3-254ENST00000637050 C17orf82Q86X59 251 aaPredicted RBP17.71■□□□□ 0.42
CLN3-254ENST00000637050 FUNDC1Q8IVP5 155 aa17.71■□□□□ 0.42
CLN3-254ENST00000637050 OR9I1Q8NGQ6 314 aa17.71■□□□□ 0.42
CLN3-254ENST00000637050 FLVCR1-AS1Q8TAF5 88 aa17.71■□□□□ 0.42
CLN3-254ENST00000637050 APIPQ96GX9 242 aa17.71■□□□□ 0.42
CLN3-254ENST00000637050 METTL2AQ96IZ6 378 aaKnown RBP17.71■□□□□ 0.42
CLN3-254ENST00000637050 RHBGQ9H310 441 aa17.71■□□□□ 0.42
CLN3-254ENST00000637050 SLC6A20Q9NP91 592 aa17.71■□□□□ 0.42
CLN3-254ENST00000637050 DMRT3Q9NQL9 472 aa17.71■□□□□ 0.42
CLN3-254ENST00000637050 TMEM184CQ9NVA4 438 aa17.71■□□□□ 0.42
CLN3-254ENST00000637050 TMEM45AQ9NWC5 275 aa17.71■□□□□ 0.42
CLN3-254ENST00000637050 UCKL1Q9NWZ5 548 aa17.71■□□□□ 0.42
CLN3-254ENST00000637050 TAS2R1Q9NYW7 299 aa17.71■□□□□ 0.42
CLN3-254ENST00000637050 CCDC167Q9P0B6 97 aa17.71■□□□□ 0.42
CLN3-254ENST00000637050 PPT2Q9UMR5 302 aa17.71■□□□□ 0.42
CLN3-254ENST00000637050 EIF3LQ9Y262 564 aaKnown RBP17.71■□□□□ 0.42
CLN3-254ENST00000637050 TMED5Q9Y3A6 229 aa17.71■□□□□ 0.42
CLN3-254ENST00000637050 POLR3HQ9Y535 204 aaPredicted RBP17.71■□□□□ 0.42
CLN3-254ENST00000637050 NOBOXO60393 691 aa17.7■□□□□ 0.42
CLN3-254ENST00000637050 SDC3O75056 442 aa17.7■□□□□ 0.42
CLN3-254ENST00000637050 ANXA6P08133 673 aa17.7■□□□□ 0.42
CLN3-254ENST00000637050 G6PDP11413 515 aa17.7■□□□□ 0.42
CLN3-254ENST00000637050 ACPPP15309 386 aa17.7■□□□□ 0.42
CLN3-254ENST00000637050 AMD1P17707 334 aa17.7■□□□□ 0.42
CLN3-254ENST00000637050 HRH2P25021 359 aa17.7■□□□□ 0.42
CLN3-254ENST00000637050 RXRGP48443 463 aa17.7■□□□□ 0.42
CLN3-254ENST00000637050 CORO7P57737 925 aa17.7■□□□□ 0.42
CLN3-254ENST00000637050 RPS13P62277 151 aaKnown RBP17.7■□□□□ 0.42
CLN3-254ENST00000637050 CYP20A1Q6UW02 462 aa17.7■□□□□ 0.42
CLN3-254ENST00000637050 GK5Q6ZS86 529 aa17.7■□□□□ 0.42
CLN3-254ENST00000637050 FCRL1Q96LA6 429 aa17.7■□□□□ 0.42
CLN3-254ENST00000637050 BTBD10Q9BSF8 475 aa17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms