RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 LMO2P25791 158 aa2.03□□□□□ -2.08
SCN1A-208ENST00000625916 PRELPP51888 382 aa2.03□□□□□ -2.08
SCN1A-208ENST00000625916 DCDC1P59894 354 aa2.03□□□□□ -2.08
SCN1A-208ENST00000625916 TRA2AQ13595 282 aaKnown RBP eCLIP2.03□□□□□ -2.08
SCN1A-208ENST00000625916 ALDH1L2Q3SY69 923 aa2.03□□□□□ -2.08
SCN1A-208ENST00000625916 GPR33Q49SQ1 333 aa2.03□□□□□ -2.08
SCN1A-208ENST00000625916 LEMD1Q68G75 181 aa2.03□□□□□ -2.08
SCN1A-208ENST00000625916 VASH2Q86V25 355 aa2.03□□□□□ -2.08
SCN1A-208ENST00000625916 OR4K1Q8NGD4 311 aa2.03□□□□□ -2.08
SCN1A-208ENST00000625916 SLC26A6Q9BXS9 759 aa2.03□□□□□ -2.08
SCN1A-208ENST00000625916 LRRCC1Q9C099 1032 aa2.03□□□□□ -2.08
SCN1A-208ENST00000625916 MMP27Q9H306 513 aa2.03□□□□□ -2.08
SCN1A-208ENST00000625916 SMARCAD1Q9H4L7 1026 aa2.03□□□□□ -2.08
SCN1A-208ENST00000625916 OPA3Q9H6K4 179 aa2.03□□□□□ -2.08
SCN1A-208ENST00000625916 CLEC5AQ9NY25 188 aa2.03□□□□□ -2.08
SCN1A-208ENST00000625916 SEC63Q9UGP8 760 aaKnown RBP2.03□□□□□ -2.08
SCN1A-208ENST00000625916 IL17BQ9UHF5 180 aa2.03□□□□□ -2.08
SCN1A-208ENST00000625916 PRDM4Q9UKN5 801 aa2.03□□□□□ -2.08
SCN1A-208ENST00000625916 ELF5Q9UKW6 265 aaPredicted RBP2.03□□□□□ -2.08
SCN1A-208ENST00000625916 PADI2Q9Y2J8 665 aa2.03□□□□□ -2.08
SCN1A-208ENST00000625916 IGHV3-20A0A0C4DH32 117 aa2.02□□□□□ -2.09
SCN1A-208ENST00000625916 IQCMA0A1B0GVH7 501 aa2.02□□□□□ -2.09
SCN1A-208ENST00000625916 FEZF1A0PJY2 475 aa2.02□□□□□ -2.09
SCN1A-208ENST00000625916 ARHGEF33A8MVX0 844 aa2.02□□□□□ -2.09
SCN1A-208ENST00000625916 K7ENM7 598 aa2.02□□□□□ -2.09
SCN1A-208ENST00000625916 NPHP1O15259 732 aa2.02□□□□□ -2.09
SCN1A-208ENST00000625916 EIF3JO75822 258 aaKnown RBP2.02□□□□□ -2.09
SCN1A-208ENST00000625916 IGHV2-70P01814 119 aa2.02□□□□□ -2.09
SCN1A-208ENST00000625916 PKLRP30613 574 aa2.02□□□□□ -2.09
SCN1A-208ENST00000625916 ELK3P41970 407 aa2.02□□□□□ -2.09
SCN1A-208ENST00000625916 ALDH3A2P51648 485 aa2.02□□□□□ -2.09
SCN1A-208ENST00000625916 CCR3P51677 355 aa2.02□□□□□ -2.09
SCN1A-208ENST00000625916 SRPXP78539 464 aa2.02□□□□□ -2.09
SCN1A-208ENST00000625916 SETQ01105 290 aaPredicted RBP2.02□□□□□ -2.09
SCN1A-208ENST00000625916 ACY1Q03154 408 aa2.02□□□□□ -2.09
SCN1A-208ENST00000625916 TRAP1Q12931 704 aaKnown RBP2.02□□□□□ -2.09
SCN1A-208ENST00000625916 G3BP1Q13283 466 aaKnown RBP eCLIP2.02□□□□□ -2.09
SCN1A-208ENST00000625916 SIX1Q15475 284 aaPredicted RBP2.02□□□□□ -2.09
SCN1A-208ENST00000625916 TMEM95Q3KNT9 176 aa2.02□□□□□ -2.09
SCN1A-208ENST00000625916 C9orf66Q5T8R8 295 aa2.02□□□□□ -2.09
SCN1A-208ENST00000625916 MARC1Q5VT66 337 aa2.02□□□□□ -2.09
SCN1A-208ENST00000625916 SNX30Q5VWJ9 437 aa2.02□□□□□ -2.09
SCN1A-208ENST00000625916 SLC24A5Q71RS6 500 aa2.02□□□□□ -2.09
SCN1A-208ENST00000625916 OR10Q1Q8NGQ4 319 aa2.02□□□□□ -2.09
SCN1A-208ENST00000625916 SSC4DQ8WTU2 575 aa2.02□□□□□ -2.09
SCN1A-208ENST00000625916 UCMAQ8WVF2 138 aa2.02□□□□□ -2.09
SCN1A-208ENST00000625916 METTL21AQ8WXB1 218 aa2.02□□□□□ -2.09
SCN1A-208ENST00000625916 SLAMF9Q96A28 289 aa2.02□□□□□ -2.09
SCN1A-208ENST00000625916 SPDL1Q96EA4 605 aa2.02□□□□□ -2.09
SCN1A-208ENST00000625916 HNRNPABQ99729 332 aaKnown RBP2.02□□□□□ -2.09
SCN1A-208ENST00000625916 ADAM22Q9P0K1 906 aa2.02□□□□□ -2.09
SCN1A-208ENST00000625916 FBXO2Q9UK22 296 aaPredicted RBP2.02□□□□□ -2.09
SCN1A-208ENST00000625916 POGZQ7Z3K3 1410 aa2.01□□□□□ -2.09
SCN1A-208ENST00000625916 A0A1B0GTH9 108 aa2.01□□□□□ -2.09
SCN1A-208ENST00000625916 PAPSS1O43252 624 aaPredicted RBP2.01□□□□□ -2.09
SCN1A-208ENST00000625916 TBX18O95935 607 aa2.01□□□□□ -2.09
SCN1A-208ENST00000625916 SCGB1D1O95968 90 aa2.01□□□□□ -2.09
SCN1A-208ENST00000625916 BCL10O95999 233 aa2.01□□□□□ -2.09
SCN1A-208ENST00000625916 MT-ND1P03886 318 aa2.01□□□□□ -2.09
SCN1A-208ENST00000625916 ADORA3P0DMS8 318 aa2.01□□□□□ -2.09
SCN1A-208ENST00000625916 IRF2P14316 349 aa2.01□□□□□ -2.09
SCN1A-208ENST00000625916 CHRNA3P32297 505 aa2.01□□□□□ -2.09
SCN1A-208ENST00000625916 GARSP41250 739 aaKnown RBP2.01□□□□□ -2.09
SCN1A-208ENST00000625916 MATR3P43243 847 aaKnown RBP eCLIP2.01□□□□□ -2.09
SCN1A-208ENST00000625916 SLC15A1P46059 708 aa2.01□□□□□ -2.09
SCN1A-208ENST00000625916 VAMP7P51809 220 aa2.01□□□□□ -2.09
SCN1A-208ENST00000625916 RIDAP52758 137 aaKnown RBP2.01□□□□□ -2.09
SCN1A-208ENST00000625916 PNLIPRP2P54317 469 aa2.01□□□□□ -2.09
SCN1A-208ENST00000625916 AIMP2Q13155 320 aaKnown RBP2.01□□□□□ -2.09
SCN1A-208ENST00000625916 UPP1Q16831 310 aa2.01□□□□□ -2.09
SCN1A-208ENST00000625916 TTC31Q49AM3 519 aaPredicted RBP2.01□□□□□ -2.09
SCN1A-208ENST00000625916 MCMDC2Q4G0Z9 681 aa2.01□□□□□ -2.09
SCN1A-208ENST00000625916 UTF1Q5T230 341 aa2.01□□□□□ -2.09
SCN1A-208ENST00000625916 HAUS3Q68CZ6 603 aa2.01□□□□□ -2.09
SCN1A-208ENST00000625916 OR4A47Q6IF82 309 aa2.01□□□□□ -2.09
SCN1A-208ENST00000625916 NUP54Q7Z3B4 507 aa2.01□□□□□ -2.09
SCN1A-208ENST00000625916 HIPK1Q86Z02 1210 aa2.01□□□□□ -2.09
SCN1A-208ENST00000625916 TCEANCQ8N8B7 351 aa2.01□□□□□ -2.09
SCN1A-208ENST00000625916 PIK3R3Q92569 461 aa2.01□□□□□ -2.09
SCN1A-208ENST00000625916 EQTNQ9NQ60 294 aa2.01□□□□□ -2.09
SCN1A-208ENST00000625916 KRT84Q9NSB2 600 aa2.01□□□□□ -2.09
SCN1A-208ENST00000625916 IL17CQ9P0M4 197 aa2.01□□□□□ -2.09
SCN1A-208ENST00000625916 AASSQ9UDR5 926 aa2.01□□□□□ -2.09
SCN1A-208ENST00000625916 RALGAPA1Q6GYQ0 2036 aa2.01□□□□□ -2.09
SCN1A-208ENST00000625916 NEMP2A6NFY4 417 aa2□□□□□ -2.09
SCN1A-208ENST00000625916 RPL37AP8A6NKH3 93 aa2□□□□□ -2.09
SCN1A-208ENST00000625916 B4DLN1 442 aa2□□□□□ -2.09
SCN1A-208ENST00000625916 VILLO15195 856 aa2□□□□□ -2.09
SCN1A-208ENST00000625916 TPD52L2O43399 206 aaKnown RBP2□□□□□ -2.09
SCN1A-208ENST00000625916 ACSL3O95573 720 aa2□□□□□ -2.09
SCN1A-208ENST00000625916 SUPT20HL2P0C7V6 817 aa2□□□□□ -2.09
SCN1A-208ENST00000625916 SELEP16581 610 aa2□□□□□ -2.09
SCN1A-208ENST00000625916 RPL34P49207 117 aaKnown RBP2□□□□□ -2.09
SCN1A-208ENST00000625916 MRPL12P52815 198 aaKnown RBP2□□□□□ -2.09
SCN1A-208ENST00000625916 MAPK12P53778 367 aa2□□□□□ -2.09
SCN1A-208ENST00000625916 SRSF9Q13242 221 aaKnown RBP eCLIP2□□□□□ -2.09
SCN1A-208ENST00000625916 KRT32Q14532 448 aa2□□□□□ -2.09
SCN1A-208ENST00000625916 IRF3Q14653 427 aa2□□□□□ -2.09
SCN1A-208ENST00000625916 IGSF11Q5DX21 431 aa2□□□□□ -2.09
SCN1A-208ENST00000625916 WSCD1Q658N2 575 aa2□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms