RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 C17orf82Q86X59 251 aaPredicted RBP13.72□□□□□ -0.21
USP39-220ENST00000613444 ZFAND4Q86XD8 727 aa13.72□□□□□ -0.21
USP39-220ENST00000613444 GKN2Q86XP6 184 aa13.72□□□□□ -0.21
USP39-220ENST00000613444 TRIM48Q8IWZ4 208 aa13.72□□□□□ -0.21
USP39-220ENST00000613444 FAM20CQ8IXL6 584 aa13.72□□□□□ -0.21
USP39-220ENST00000613444 FBXL6Q8N531 539 aa13.72□□□□□ -0.21
USP39-220ENST00000613444 OR2L3Q8NG85 312 aa13.72□□□□□ -0.21
USP39-220ENST00000613444 CMTM5Q96DZ9 223 aa13.72□□□□□ -0.21
USP39-220ENST00000613444 PRAP1Q96NZ9 151 aa13.72□□□□□ -0.21
USP39-220ENST00000613444 LRMDAQ9H2I8 198 aa13.72□□□□□ -0.21
USP39-220ENST00000613444 SRMSQ9H3Y6 488 aa13.72□□□□□ -0.21
USP39-220ENST00000613444 BRF2Q9HAW0 419 aa13.72□□□□□ -0.21
USP39-220ENST00000613444 LRTM1Q9HBL6 345 aa13.72□□□□□ -0.21
USP39-220ENST00000613444 SLC6A20Q9NP91 592 aa13.72□□□□□ -0.21
USP39-220ENST00000613444 UCKL1Q9NWZ5 548 aa13.72□□□□□ -0.21
USP39-220ENST00000613444 C1orf109Q9NX04 203 aa13.72□□□□□ -0.21
USP39-220ENST00000613444 SNX11Q9Y5W9 270 aa13.72□□□□□ -0.21
USP39-220ENST00000613444 LOC100653049A0A140TA62 436 aa13.72□□□□□ -0.21
USP39-220ENST00000613444 B4DGG1 531 aa13.72□□□□□ -0.21
USP39-220ENST00000613444 LMO7DNF2Z398 122 aa13.72□□□□□ -0.21
USP39-220ENST00000613444 PSMD12O00232 456 aaPredicted RBP13.72□□□□□ -0.21
USP39-220ENST00000613444 NOBOXO60393 691 aa13.72□□□□□ -0.21
USP39-220ENST00000613444 HNRNPCL1O60812 293 aaKnown RBP13.72□□□□□ -0.21
USP39-220ENST00000613444 KRT34O76011 436 aa13.72□□□□□ -0.21
USP39-220ENST00000613444 HSD3B1P14060 373 aa13.72□□□□□ -0.21
USP39-220ENST00000613444 HSD3B2P26439 372 aa13.72□□□□□ -0.21
USP39-220ENST00000613444 ZFP36L2P47974 494 aaKnown RBP13.72□□□□□ -0.21
USP39-220ENST00000613444 CCR8P51685 355 aa13.72□□□□□ -0.21
USP39-220ENST00000613444 CSNK1G2P78368 415 aa13.72□□□□□ -0.21
USP39-220ENST00000613444 IRX1P78414 480 aaPredicted RBP13.72□□□□□ -0.21
USP39-220ENST00000613444 REEP5Q00765 189 aa13.72□□□□□ -0.21
USP39-220ENST00000613444 HERC3Q15034 1050 aa13.72□□□□□ -0.21
USP39-220ENST00000613444 SHBQ15464 509 aa13.72□□□□□ -0.21
USP39-220ENST00000613444 IMPG1Q17R60 797 aa13.72□□□□□ -0.21
USP39-220ENST00000613444 PEAR1Q5VY43 1037 aaPredicted RBP13.72□□□□□ -0.21
USP39-220ENST00000613444 PAOXQ6QHF9 649 aa13.72□□□□□ -0.21
USP39-220ENST00000613444 RINLQ6ZS11 566 aa13.72□□□□□ -0.21
USP39-220ENST00000613444 SDR16C5Q8N3Y7 309 aa13.72□□□□□ -0.21
USP39-220ENST00000613444 C11orf24Q96F05 449 aaPredicted RBP13.72□□□□□ -0.21
USP39-220ENST00000613444 SLC45A3Q96JT2 553 aa13.72□□□□□ -0.21
USP39-220ENST00000613444 TEX37Q96LM6 180 aa13.72□□□□□ -0.21
USP39-220ENST00000613444 ACTL8Q9H568 366 aa13.72□□□□□ -0.21
USP39-220ENST00000613444 TAS2R1Q9NYW7 299 aa13.72□□□□□ -0.21
USP39-220ENST00000613444 FOXE1O00358 373 aaPredicted RBP13.71□□□□□ -0.21
USP39-220ENST00000613444 ANKRD28O15084 1053 aa13.71□□□□□ -0.21
USP39-220ENST00000613444 NRP2O60462 931 aa13.71□□□□□ -0.21
USP39-220ENST00000613444 SDC3O75056 442 aa13.71□□□□□ -0.21
USP39-220ENST00000613444 TBX6O95947 436 aaPredicted RBP13.71□□□□□ -0.21
USP39-220ENST00000613444 RPL38P63173 70 aaKnown RBP13.71□□□□□ -0.21
USP39-220ENST00000613444 GRIK2Q13002 908 aa13.71□□□□□ -0.21
USP39-220ENST00000613444 TEAD4Q15561 434 aa13.71□□□□□ -0.21
USP39-220ENST00000613444 CHCHD2P9Q5T1J5 151 aaPredicted RBP13.71□□□□□ -0.21
USP39-220ENST00000613444 C10orf62Q5T681 223 aaPredicted RBP13.71□□□□□ -0.21
USP39-220ENST00000613444 IL23RQ5VWK5 629 aa13.71□□□□□ -0.21
USP39-220ENST00000613444 TMIGD1Q6UXZ0 262 aa13.71□□□□□ -0.21
USP39-220ENST00000613444 TMEM26Q6ZUK4 368 aa13.71□□□□□ -0.21
USP39-220ENST00000613444 SLC9B2Q86UD5 537 aa13.71□□□□□ -0.21
USP39-220ENST00000613444 SNX32Q86XE0 403 aa13.71□□□□□ -0.21
USP39-220ENST00000613444 MIER2Q8N344 545 aa13.71□□□□□ -0.21
USP39-220ENST00000613444 RP9Q8TA86 221 aaKnown RBP13.71□□□□□ -0.21
USP39-220ENST00000613444 REPS1Q96D71 796 aa13.71□□□□□ -0.21
USP39-220ENST00000613444 CMTM7Q96FZ5 175 aa13.71□□□□□ -0.21
USP39-220ENST00000613444 APIPQ96GX9 242 aa13.71□□□□□ -0.21
USP39-220ENST00000613444 FCRL1Q96LA6 429 aa13.71□□□□□ -0.21
USP39-220ENST00000613444 RHBGQ9H310 441 aa13.71□□□□□ -0.21
USP39-220ENST00000613444 ASIC5Q9NY37 505 aa13.71□□□□□ -0.21
USP39-220ENST00000613444 CCDC167Q9P0B6 97 aa13.71□□□□□ -0.21
USP39-220ENST00000613444 PCDH15Q96QU1 1955 aa13.71□□□□□ -0.21
USP39-220ENST00000613444 SEC22BO75396 215 aa13.71□□□□□ -0.22
USP39-220ENST00000613444 DNAJC8O75937 253 aaPredicted RBP13.71□□□□□ -0.22
USP39-220ENST00000613444 G6PDP11413 515 aa13.71□□□□□ -0.22
USP39-220ENST00000613444 PCNAP12004 261 aa13.71□□□□□ -0.22
USP39-220ENST00000613444 PTPN4P29074 926 aa13.71□□□□□ -0.22
USP39-220ENST00000613444 CPOXP36551 454 aa13.71□□□□□ -0.22
USP39-220ENST00000613444 FASLGP48023 281 aa13.71□□□□□ -0.22
USP39-220ENST00000613444 MAZP56270 477 aaKnown RBP13.71□□□□□ -0.22
USP39-220ENST00000613444 ABATP80404 500 aa13.71□□□□□ -0.22
USP39-220ENST00000613444 HHEXQ03014 270 aa13.71□□□□□ -0.22
USP39-220ENST00000613444 DDX39BQ13838 428 aaKnown RBP13.71□□□□□ -0.22
USP39-220ENST00000613444 PLCL1Q15111 1095 aa13.71□□□□□ -0.22
USP39-220ENST00000613444 ZNF528Q3MIS6 628 aa13.71□□□□□ -0.22
USP39-220ENST00000613444 PDCD4Q53EL6 469 aaKnown RBP13.71□□□□□ -0.22
USP39-220ENST00000613444 AGKQ53H12 422 aa13.71□□□□□ -0.22
USP39-220ENST00000613444 KIAA1614Q5VZ46 1190 aa13.71□□□□□ -0.22
USP39-220ENST00000613444 OGFOD3Q6PK18 319 aa13.71□□□□□ -0.22
USP39-220ENST00000613444 GK5Q6ZS86 529 aa13.71□□□□□ -0.22
USP39-220ENST00000613444 ANKRD53Q8N9V6 530 aa13.71□□□□□ -0.22
USP39-220ENST00000613444 ZBTB44Q8NCP5 570 aa13.71□□□□□ -0.22
USP39-220ENST00000613444 OR2A14Q96R47 310 aa13.71□□□□□ -0.22
USP39-220ENST00000613444 AIF1LQ9BQI0 150 aa13.71□□□□□ -0.22
USP39-220ENST00000613444 NT5DC2Q9H857 520 aa13.71□□□□□ -0.22
USP39-220ENST00000613444 SLC52A3Q9NQ40 469 aa13.71□□□□□ -0.22
USP39-220ENST00000613444 DMRT3Q9NQL9 472 aa13.71□□□□□ -0.22
USP39-220ENST00000613444 NOP53Q9NZM5 478 aaKnown RBP13.71□□□□□ -0.22
USP39-220ENST00000613444 VPS29Q9UBQ0 182 aa13.71□□□□□ -0.22
USP39-220ENST00000613444 PPT2Q9UMR5 302 aa13.71□□□□□ -0.22
USP39-220ENST00000613444 FAM221BA6H8Z2 402 aa13.7□□□□□ -0.22
USP39-220ENST00000613444 PPM1DO15297 605 aa13.7□□□□□ -0.22
USP39-220ENST00000613444 GIMD1P0DJR0 217 aa13.7□□□□□ -0.22
USP39-220ENST00000613444 THRAP10827 490 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms