RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 ZSCAN9O15535 394 aaPredicted RBP15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 RRP8O43159 456 aaKnown RBP15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 RAD1O60671 282 aa15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 SRPX2O60687 465 aaPredicted RBP15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 CPNE3O75131 537 aaKnown RBP15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 STK16O75716 305 aa15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 WDR47O94967 919 aa15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 MT-ND3P03897 115 aa15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 RBP1P09455 135 aa15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 HSPA7P48741 367 aa15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 CSNK1G2P78368 415 aa15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 IFFO1Q0D2I5 559 aa15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 MAP7Q14244 749 aa15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 ST3GAL2Q16842 350 aa15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 NLGN4XQ8N0W4 816 aa15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 OR4N4Q8N0Y3 316 aa15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 GALNT6Q8NCL4 622 aa15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 NLGN4YQ8NFZ3 816 aaPredicted RBP15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 SLC5A11Q8WWX8 675 aa15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 NKD1Q969G9 470 aa15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 ESAMQ96AP7 390 aa15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 TSNARE1Q96NA8 513 aa15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 OR2A5Q96R48 311 aa15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 ROPN1BQ9BZX4 212 aaPredicted RBP15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 ROPN1Q9HAT0 212 aaPredicted RBP15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 ENAMQ9NRM1 1142 aa15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 ASB1Q9Y576 335 aa15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 KCNE2Q9Y6J6 123 aa15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 AP1M2Q9Y6Q5 423 aa15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 MDC1Q14676 2089 aaKnown RBP15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 USP24Q9UPU5 2620 aa15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 TLDC2A0PJX2 215 aa15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 SRRM3A6NNA2 597 aaPredicted RBP15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 KLK10O43240 276 aa15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 ZNF749O43361 778 aa15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 KLK8O60259 260 aa15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 PYGBP11216 843 aa15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 KRT15P19012 456 aa15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 VSX2P58304 361 aaPredicted RBP15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 TCTE1Q5JU00 501 aa15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 CATSPEREQ5SY80 951 aa15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 TLDC1Q6P9B6 456 aa15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 C6orf15Q6UXA7 325 aaPredicted RBP15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 SH2D5Q6ZV89 423 aa15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 LCA5Q86VQ0 697 aa15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 PLD3Q8IV08 490 aa15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 SPACA3Q8IXA5 215 aa15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 CACNA2D3Q8IZS8 1091 aa15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 TMEM151AQ8N4L1 468 aa15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 ZNF655Q8N720 491 aaPredicted RBP15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 OR4K1Q8NGD4 311 aa15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 UBTD2Q8WUN7 234 aa15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 SCYL1Q96KG9 808 aa15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 MRPL57Q9BQC6 102 aaKnown RBP15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 ACTR5Q9H9F9 607 aaPredicted RBP15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 IRAK4Q9NWZ3 460 aa15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 XPR1Q9UBH6 696 aa15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 PLAAQ9Y263 795 aa15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 SSUH2Q9Y2M2 353 aa15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 DYRK1BQ9Y463 629 aa15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 SEC16AO15027 2179 aa15.83■□□□□ 0.12
CCDC28A-202ENST00000611852 H0YGG7 62 aa15.83■□□□□ 0.12
CCDC28A-202ENST00000611852 TK2O00142 265 aa15.83■□□□□ 0.12
CCDC28A-202ENST00000611852 GCGRP47871 477 aa15.83■□□□□ 0.12
CCDC28A-202ENST00000611852 AGTR2P50052 363 aa15.83■□□□□ 0.12
CCDC28A-202ENST00000611852 CCR8P51685 355 aa15.83■□□□□ 0.12
CCDC28A-202ENST00000611852 ARF3P61204 181 aaPredicted RBP15.83■□□□□ 0.12
CCDC28A-202ENST00000611852 PFKFB4Q16877 469 aa15.83■□□□□ 0.12
CCDC28A-202ENST00000611852 WASHC2DQ5SRD0 308 aa15.83■□□□□ 0.12
CCDC28A-202ENST00000611852 LRRC69Q6ZNQ3 347 aa15.83■□□□□ 0.12
CCDC28A-202ENST00000611852 RIBC1Q8N443 379 aaPredicted RBP15.83■□□□□ 0.12
CCDC28A-202ENST00000611852 ESX1Q8N693 406 aa15.83■□□□□ 0.12
CCDC28A-202ENST00000611852 CLIP3Q96DZ5 547 aa15.83■□□□□ 0.12
CCDC28A-202ENST00000611852 LRFN5Q96NI6 719 aa15.83■□□□□ 0.12
CCDC28A-202ENST00000611852 CD244Q9BZW8 370 aa15.83■□□□□ 0.12
CCDC28A-202ENST00000611852 MRPL46Q9H2W6 279 aaKnown RBP15.83■□□□□ 0.12
CCDC28A-202ENST00000611852 STARD5Q9NSY2 213 aa15.83■□□□□ 0.12
CCDC28A-202ENST00000611852 DNAJC11Q9NVH1 559 aa15.83■□□□□ 0.12
CCDC28A-202ENST00000611852 TMEM216Q9P0N5 145 aa15.83■□□□□ 0.12
CCDC28A-202ENST00000611852 ZFHX4Q86UP3 3567 aa15.82■□□□□ 0.12
CCDC28A-202ENST00000611852 EPG5Q9HCE0 2579 aa15.82■□□□□ 0.12
CCDC28A-202ENST00000611852 KCNE1BA0A087WTH5 132 aa15.82■□□□□ 0.12
CCDC28A-202ENST00000611852 FEZF1A0PJY2 475 aa15.82■□□□□ 0.12
CCDC28A-202ENST00000611852 FITM1A5D6W6 292 aa15.82■□□□□ 0.12
CCDC28A-202ENST00000611852 CCDC151A5D8V7 595 aa15.82■□□□□ 0.12
CCDC28A-202ENST00000611852 CCNT2O60583 730 aaKnown RBP15.82■□□□□ 0.12
CCDC28A-202ENST00000611852 ERLIN1O75477 346 aa15.82■□□□□ 0.12
CCDC28A-202ENST00000611852 EIF2S1P05198 315 aaKnown RBP15.82■□□□□ 0.12
CCDC28A-202ENST00000611852 SBK3P0C264 359 aa15.82■□□□□ 0.12
CCDC28A-202ENST00000611852 GFAPP14136 432 aa15.82■□□□□ 0.12
CCDC28A-202ENST00000611852 GNAZP19086 355 aa15.82■□□□□ 0.12
CCDC28A-202ENST00000611852 ITPKBP27987 946 aa15.82■□□□□ 0.12
CCDC28A-202ENST00000611852 RORAP35398 523 aa15.82■□□□□ 0.12
CCDC28A-202ENST00000611852 ATP1A2P50993 1020 aa15.82■□□□□ 0.12
CCDC28A-202ENST00000611852 ALDH18A1P54886 795 aaKnown RBP15.82■□□□□ 0.12
CCDC28A-202ENST00000611852 RPS15AP62244 130 aaKnown RBP15.82■□□□□ 0.12
CCDC28A-202ENST00000611852 TLE3Q04726 772 aa15.82■□□□□ 0.12
CCDC28A-202ENST00000611852 CDC16Q13042 620 aa15.82■□□□□ 0.12
CCDC28A-202ENST00000611852 GPS2Q13227 327 aa15.82■□□□□ 0.12
CCDC28A-202ENST00000611852 SETDB1Q15047 1291 aa15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms