RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 DOC2AQ14183 400 aa13.79□□□□□ -0.2
UPF1-211ENST00000600868 GGTA1PQ4G0N0 100 aa13.79□□□□□ -0.2
UPF1-211ENST00000600868 CATSPEREQ5SY80 951 aa13.79□□□□□ -0.2
UPF1-211ENST00000600868 CACHD1Q5VU97 1274 aa13.79□□□□□ -0.2
UPF1-211ENST00000600868 ATG14Q6ZNE5 492 aa13.79□□□□□ -0.2
UPF1-211ENST00000600868 TMPRSS9Q7Z410 1059 aa13.79□□□□□ -0.2
UPF1-211ENST00000600868 SYVN1Q86TM6 617 aa13.79□□□□□ -0.2
UPF1-211ENST00000600868 PAQR7Q86WK9 346 aa13.79□□□□□ -0.2
UPF1-211ENST00000600868 KMT5CQ86Y97 462 aa13.79□□□□□ -0.2
UPF1-211ENST00000600868 AGAP11Q8TF27 550 aa13.79□□□□□ -0.2
UPF1-211ENST00000600868 AIF1LQ9BQI0 150 aa13.79□□□□□ -0.2
UPF1-211ENST00000600868 EFCAB11Q9BUY7 163 aa13.79□□□□□ -0.2
UPF1-211ENST00000600868 SARGQ9BW04 601 aa13.79□□□□□ -0.2
UPF1-211ENST00000600868 C20orf27Q9GZN8 174 aa13.79□□□□□ -0.2
UPF1-211ENST00000600868 CHRNA10Q9GZZ6 450 aa13.79□□□□□ -0.2
UPF1-211ENST00000600868 SYNDIG1Q9H7V2 258 aa13.79□□□□□ -0.2
UPF1-211ENST00000600868 MID1IP1Q9NPA3 183 aa13.79□□□□□ -0.2
UPF1-211ENST00000600868 ZNF225Q9UK10 706 aa13.79□□□□□ -0.2
UPF1-211ENST00000600868 CDV3Q9UKY7 258 aaKnown RBP13.79□□□□□ -0.2
UPF1-211ENST00000600868 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.79□□□□□ -0.2
UPF1-211ENST00000600868 SNRNP200O75643 2136 aaKnown RBP13.79□□□□□ -0.2
UPF1-211ENST00000600868 IGHV5-51A0A0C4DH38 117 aa13.78□□□□□ -0.2
UPF1-211ENST00000600868 IGHV5-10-1A0A0J9YXX1 117 aa13.78□□□□□ -0.2
UPF1-211ENST00000600868 A0A1B0GTL3 188 aa13.78□□□□□ -0.2
UPF1-211ENST00000600868 SLC9B1P1A6NJY1 282 aa13.78□□□□□ -0.2
UPF1-211ENST00000600868 KIF1CO43896 1103 aaKnown RBP13.78□□□□□ -0.2
UPF1-211ENST00000600868 RASSF9O75901 435 aa13.78□□□□□ -0.2
UPF1-211ENST00000600868 ZBTB11O95625 1053 aaPredicted RBP13.78□□□□□ -0.2
UPF1-211ENST00000600868 HSPA4LO95757 839 aa13.78□□□□□ -0.2
UPF1-211ENST00000600868 ENO1P06733 434 aaKnown RBP13.78□□□□□ -0.2
UPF1-211ENST00000600868 ANKRD34CP0C6C1 535 aa13.78□□□□□ -0.2
UPF1-211ENST00000600868 THRAP10827 490 aa13.78□□□□□ -0.2
UPF1-211ENST00000600868 JUPP14923 745 aa13.78□□□□□ -0.2
UPF1-211ENST00000600868 PVRP15151 417 aa13.78□□□□□ -0.2
UPF1-211ENST00000600868 CD22P20273 847 aa13.78□□□□□ -0.2
UPF1-211ENST00000600868 SDHBP21912 280 aa13.78□□□□□ -0.2
UPF1-211ENST00000600868 VARSP26640 1264 aaKnown RBP13.78□□□□□ -0.2
UPF1-211ENST00000600868 REEP5Q00765 189 aa13.78□□□□□ -0.2
UPF1-211ENST00000600868 ZFP36L1Q07352 338 aaKnown RBP13.78□□□□□ -0.2
UPF1-211ENST00000600868 TRA2AQ13595 282 aaKnown RBP eCLIP13.78□□□□□ -0.2
UPF1-211ENST00000600868 PAGE2BQ5JRK9 111 aa13.78□□□□□ -0.2
UPF1-211ENST00000600868 FCRL6Q6DN72 434 aa13.78□□□□□ -0.2
UPF1-211ENST00000600868 GRHL2Q6ISB3 625 aa13.78□□□□□ -0.2
UPF1-211ENST00000600868 LETMD1Q6P1Q0 360 aa13.78□□□□□ -0.2
UPF1-211ENST00000600868 ARHGAP22Q7Z5H3 698 aa13.78□□□□□ -0.2
UPF1-211ENST00000600868 ADCK2Q7Z695 626 aa13.78□□□□□ -0.2
UPF1-211ENST00000600868 SLCO6A1Q86UG4 719 aa13.78□□□□□ -0.2
UPF1-211ENST00000600868 CUZD1Q86UP6 607 aa13.78□□□□□ -0.2
UPF1-211ENST00000600868 SLITRK4Q8IW52 837 aa13.78□□□□□ -0.2
UPF1-211ENST00000600868 HOMEZQ8IX15 550 aa13.78□□□□□ -0.2
UPF1-211ENST00000600868 KIRREL3Q8IZU9 778 aa13.78□□□□□ -0.2
UPF1-211ENST00000600868 KRT78Q8N1N4 520 aa13.78□□□□□ -0.2
UPF1-211ENST00000600868 C19orf47Q8N9M1 422 aaKnown RBP13.78□□□□□ -0.2
UPF1-211ENST00000600868 OR4F6Q8NGB9 312 aa13.78□□□□□ -0.2
UPF1-211ENST00000600868 KLHL6Q8WZ60 621 aa13.78□□□□□ -0.2
UPF1-211ENST00000600868 TCTN2Q96GX1 697 aa13.78□□□□□ -0.2
UPF1-211ENST00000600868 CDK15Q96Q40 435 aa13.78□□□□□ -0.2
UPF1-211ENST00000600868 SORT1Q99523 831 aa13.78□□□□□ -0.2
UPF1-211ENST00000600868 ILKAPQ9H0C8 392 aaPredicted RBP13.78□□□□□ -0.2
UPF1-211ENST00000600868 NT5DC2Q9H857 520 aa13.78□□□□□ -0.2
UPF1-211ENST00000600868 ZNF395Q9H8N7 513 aaPredicted RBP13.78□□□□□ -0.2
UPF1-211ENST00000600868 GEMIN8Q9NWZ8 242 aaKnown RBP13.78□□□□□ -0.2
UPF1-211ENST00000600868 KLHL3Q9UH77 587 aa13.78□□□□□ -0.2
UPF1-211ENST00000600868 TRPS1Q9UHF7 1281 aa13.78□□□□□ -0.2
UPF1-211ENST00000600868 HAO1Q9UJM8 370 aa13.78□□□□□ -0.2
UPF1-211ENST00000600868 BTRCQ9Y297 605 aa13.78□□□□□ -0.2
UPF1-211ENST00000600868 KLHL20Q9Y2M5 609 aa13.78□□□□□ -0.2
UPF1-211ENST00000600868 RNF11Q9Y3C5 154 aa13.78□□□□□ -0.2
UPF1-211ENST00000600868 HEATR5BQ9P2D3 2071 aa13.78□□□□□ -0.2
UPF1-211ENST00000600868 PTPRZ1P23471 2315 aaPredicted RBP13.78□□□□□ -0.2
UPF1-211ENST00000600868 KCNE1BA0A087WTH5 132 aa13.77□□□□□ -0.21
UPF1-211ENST00000600868 TRBC2A0A5B9 178 aa13.77□□□□□ -0.21
UPF1-211ENST00000600868 H0YIV9 168 aa13.77□□□□□ -0.21
UPF1-211ENST00000600868 POLR3GO15318 223 aaPredicted RBP13.77□□□□□ -0.21
UPF1-211ENST00000600868 MAP3K7O43318 606 aa13.77□□□□□ -0.21
UPF1-211ENST00000600868 LYPLA1O75608 230 aaPredicted RBP13.77□□□□□ -0.21
UPF1-211ENST00000600868 OR4F21O95013 312 aa13.77□□□□□ -0.21
UPF1-211ENST00000600868 FGF4P08620 206 aa13.77□□□□□ -0.21
UPF1-211ENST00000600868 HGFP14210 728 aa13.77□□□□□ -0.21
UPF1-211ENST00000600868 EZRP15311 586 aaKnown RBP13.77□□□□□ -0.21
UPF1-211ENST00000600868 MPSTP25325 297 aa13.77□□□□□ -0.21
UPF1-211ENST00000600868 GRK3P35626 688 aa13.77□□□□□ -0.21
UPF1-211ENST00000600868 ARL1P40616 181 aaPredicted RBP13.77□□□□□ -0.21
UPF1-211ENST00000600868 HSD11B2P80365 405 aa13.77□□□□□ -0.21
UPF1-211ENST00000600868 INSM1Q01101 510 aaPredicted RBP13.77□□□□□ -0.21
UPF1-211ENST00000600868 OCRLQ01968 901 aa13.77□□□□□ -0.21
UPF1-211ENST00000600868 SLBPQ14493 270 aaKnown RBP eCLIP13.77□□□□□ -0.21
UPF1-211ENST00000600868 ZIC1Q15915 447 aa13.77□□□□□ -0.21
UPF1-211ENST00000600868 HIST2H2ACQ16777 129 aaPredicted RBP13.77□□□□□ -0.21
UPF1-211ENST00000600868 CCDC157Q569K6 752 aa13.77□□□□□ -0.21
UPF1-211ENST00000600868 SNAP47Q5SQN1 464 aa13.77□□□□□ -0.21
UPF1-211ENST00000600868 CDCP2Q5VXM1 449 aa13.77□□□□□ -0.21
UPF1-211ENST00000600868 HIST2H2AA3Q6FI13 130 aa13.77□□□□□ -0.21
UPF1-211ENST00000600868 RBM44Q6ZP01 1051 aaKnown RBP13.77□□□□□ -0.21
UPF1-211ENST00000600868 MTERF4Q7Z6M4 381 aaKnown RBP13.77□□□□□ -0.21
UPF1-211ENST00000600868 LAS2Q8IYD9 372 aa13.77□□□□□ -0.21
UPF1-211ENST00000600868 CHCHD4Q8N4Q1 142 aa13.77□□□□□ -0.21
UPF1-211ENST00000600868 TBC1D19Q8N5T2 526 aa13.77□□□□□ -0.21
UPF1-211ENST00000600868 DCBLD1Q8N8Z6 715 aa13.77□□□□□ -0.21
UPF1-211ENST00000600868 UBE2E3Q969T4 207 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms