RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 ZNF514Q96K75 400 aaPredicted RBP13.97□□□□□ -0.17
VRK3-217ENST00000599538 MYCBPQ99417 103 aaPredicted RBP13.97□□□□□ -0.17
VRK3-217ENST00000599538 TRMT61BQ9BVS5 477 aaKnown RBP13.97□□□□□ -0.17
VRK3-217ENST00000599538 DPEP2Q9H4A9 486 aa13.97□□□□□ -0.17
VRK3-217ENST00000599538 Q9H521 79 aa13.97□□□□□ -0.17
VRK3-217ENST00000599538 PRM3Q9NNZ6 103 aa13.97□□□□□ -0.17
VRK3-217ENST00000599538 GEMIN8Q9NWZ8 242 aaKnown RBP13.97□□□□□ -0.17
VRK3-217ENST00000599538 PCDHGA11Q9Y5H2 935 aa13.97□□□□□ -0.17
VRK3-217ENST00000599538 A0A096LPI6 279 aa13.96□□□□□ -0.17
VRK3-217ENST00000599538 SAP18O00422 153 aaKnown RBP13.96□□□□□ -0.17
VRK3-217ENST00000599538 LATO43561 262 aa13.96□□□□□ -0.17
VRK3-217ENST00000599538 ERN1O75460 977 aaKnown RBP13.96□□□□□ -0.17
VRK3-217ENST00000599538 SMIM18P0DKX4 95 aa13.96□□□□□ -0.17
VRK3-217ENST00000599538 UMPSP11172 480 aa13.96□□□□□ -0.17
VRK3-217ENST00000599538 LAMP1P11279 417 aa13.96□□□□□ -0.17
VRK3-217ENST00000599538 MYCLP1P12525 358 aaPredicted RBP13.96□□□□□ -0.17
VRK3-217ENST00000599538 RPL10P27635 214 aaKnown RBP13.96□□□□□ -0.17
VRK3-217ENST00000599538 KIR3DL1P43629 444 aa13.96□□□□□ -0.17
VRK3-217ENST00000599538 HSPA13P48723 471 aa13.96□□□□□ -0.17
VRK3-217ENST00000599538 MTAPQ13126 283 aa13.96□□□□□ -0.17
VRK3-217ENST00000599538 SLBPQ14493 270 aaKnown RBP eCLIP13.96□□□□□ -0.17
VRK3-217ENST00000599538 TBPL2Q6SJ96 375 aa13.96□□□□□ -0.17
VRK3-217ENST00000599538 AMZ2Q86W34 360 aa13.96□□□□□ -0.17
VRK3-217ENST00000599538 FBXO30Q8TB52 745 aa13.96□□□□□ -0.17
VRK3-217ENST00000599538 ITCHQ96J02 903 aa13.96□□□□□ -0.17
VRK3-217ENST00000599538 MAGEB10Q96LZ2 347 aaPredicted RBP13.96□□□□□ -0.17
VRK3-217ENST00000599538 ACAT2Q9BWD1 397 aa13.96□□□□□ -0.17
VRK3-217ENST00000599538 PDP2Q9P2J9 529 aa13.96□□□□□ -0.17
VRK3-217ENST00000599538 TDRKHQ9Y2W6 561 aaKnown RBP13.96□□□□□ -0.17
VRK3-217ENST00000599538 TICRRQ7Z2Z1 1910 aa13.96□□□□□ -0.17
VRK3-217ENST00000599538 ELOVL7A1L3X0 281 aa13.96□□□□□ -0.18
VRK3-217ENST00000599538 H0YJX3 145 aa13.96□□□□□ -0.18
VRK3-217ENST00000599538 RFXANKO14593 260 aa13.96□□□□□ -0.18
VRK3-217ENST00000599538 ACPPP15309 386 aa13.96□□□□□ -0.18
VRK3-217ENST00000599538 PRPS1L1P21108 318 aa13.96□□□□□ -0.18
VRK3-217ENST00000599538 MAPK9P45984 424 aa13.96□□□□□ -0.18
VRK3-217ENST00000599538 PNLIPRP1P54315 467 aa13.96□□□□□ -0.18
VRK3-217ENST00000599538 POLE2P56282 527 aa13.96□□□□□ -0.18
VRK3-217ENST00000599538 PLOD1Q02809 727 aaPredicted RBP13.96□□□□□ -0.18
VRK3-217ENST00000599538 ATP6AP1Q15904 470 aa13.96□□□□□ -0.18
VRK3-217ENST00000599538 HKDC1Q2TB90 917 aa13.96□□□□□ -0.18
VRK3-217ENST00000599538 IER5LQ5T953 404 aa13.96□□□□□ -0.18
VRK3-217ENST00000599538 DUS1LQ6P1R4 473 aaKnown RBP13.96□□□□□ -0.18
VRK3-217ENST00000599538 MED27Q6P2C8 311 aa13.96□□□□□ -0.18
VRK3-217ENST00000599538 CALHM3Q86XJ0 350 aa13.96□□□□□ -0.18
VRK3-217ENST00000599538 HOMEZQ8IX15 550 aa13.96□□□□□ -0.18
VRK3-217ENST00000599538 TBC1D21Q8IYX1 336 aa13.96□□□□□ -0.18
VRK3-217ENST00000599538 CHTF18Q8WVB6 975 aa13.96□□□□□ -0.18
VRK3-217ENST00000599538 CCDC115Q96NT0 180 aa13.96□□□□□ -0.18
VRK3-217ENST00000599538 OSBPL6Q9BZF3 934 aa13.96□□□□□ -0.18
VRK3-217ENST00000599538 BRF2Q9HAW0 419 aa13.96□□□□□ -0.18
VRK3-217ENST00000599538 ADGRE2Q9UHX3 823 aa13.96□□□□□ -0.18
VRK3-217ENST00000599538 RUVBL1Q9Y265 456 aaKnown RBP13.96□□□□□ -0.18
VRK3-217ENST00000599538 EI24O14681 340 aa13.95□□□□□ -0.18
VRK3-217ENST00000599538 AP1G1O43747 822 aa13.95□□□□□ -0.18
VRK3-217ENST00000599538 PGM3O95394 542 aa13.95□□□□□ -0.18
VRK3-217ENST00000599538 TGFB1P01137 390 aa13.95□□□□□ -0.18
VRK3-217ENST00000599538 GNAO1P09471 354 aa13.95□□□□□ -0.18
VRK3-217ENST00000599538 C1GALT1C1LP0DN25 315 aa13.95□□□□□ -0.18
VRK3-217ENST00000599538 CDH1P12830 882 aa13.95□□□□□ -0.18
VRK3-217ENST00000599538 COX7A2P14406 83 aa13.95□□□□□ -0.18
VRK3-217ENST00000599538 PAX7P23759 505 aa13.95□□□□□ -0.18
VRK3-217ENST00000599538 IRF4Q15306 451 aa13.95□□□□□ -0.18
VRK3-217ENST00000599538 INTS11Q5TA45 600 aaKnown RBP13.95□□□□□ -0.18
VRK3-217ENST00000599538 PDZD3Q86UT5 571 aa13.95□□□□□ -0.18
VRK3-217ENST00000599538 LRRTM4Q86VH4 590 aa13.95□□□□□ -0.18
VRK3-217ENST00000599538 OR10Q1Q8NGQ4 319 aa13.95□□□□□ -0.18
VRK3-217ENST00000599538 TFGQ92734 400 aaPredicted RBP13.95□□□□□ -0.18
VRK3-217ENST00000599538 GBP5Q96PP8 586 aa13.95□□□□□ -0.18
VRK3-217ENST00000599538 YY1AP1Q9H869 796 aa13.95□□□□□ -0.18
VRK3-217ENST00000599538 GORASP2Q9H8Y8 452 aa13.95□□□□□ -0.18
VRK3-217ENST00000599538 NTN4Q9HB63 628 aa13.95□□□□□ -0.18
VRK3-217ENST00000599538 LIMD1Q9UGP4 676 aa13.95□□□□□ -0.18
VRK3-217ENST00000599538 EXO1Q9UQ84 846 aaKnown RBP13.95□□□□□ -0.18
VRK3-217ENST00000599538 MAGED1Q9Y5V3 778 aaPredicted RBP13.95□□□□□ -0.18
VRK3-217ENST00000599538 PIPSLA2A3N6 862 aa13.94□□□□□ -0.18
VRK3-217ENST00000599538 GABRR3A8MPY1 467 aa13.94□□□□□ -0.18
VRK3-217ENST00000599538 UPK1AO00322 258 aa13.94□□□□□ -0.18
VRK3-217ENST00000599538 CXCR6O00574 342 aa13.94□□□□□ -0.18
VRK3-217ENST00000599538 GSTA4O15217 222 aa13.94□□□□□ -0.18
VRK3-217ENST00000599538 ANXA4P09525 319 aaPredicted RBP13.94□□□□□ -0.18
VRK3-217ENST00000599538 ZNF33BQ06732 778 aa13.94□□□□□ -0.18
VRK3-217ENST00000599538 ADAM15Q13444 863 aa13.94□□□□□ -0.18
VRK3-217ENST00000599538 THEMIS2Q5TEJ8 643 aa13.94□□□□□ -0.18
VRK3-217ENST00000599538 TMEM214Q6NUQ4 689 aaKnown RBP13.94□□□□□ -0.18
VRK3-217ENST00000599538 ARMCX6Q7L4S7 300 aa13.94□□□□□ -0.18
VRK3-217ENST00000599538 SPRED1Q7Z699 444 aa13.94□□□□□ -0.18
VRK3-217ENST00000599538 CARM1Q86X55 608 aa13.94□□□□□ -0.18
VRK3-217ENST00000599538 MICU2Q8IYU8 434 aa13.94□□□□□ -0.18
VRK3-217ENST00000599538 TMEM132CQ8N3T6 1108 aa13.94□□□□□ -0.18
VRK3-217ENST00000599538 NETO1Q8TDF5 533 aa13.94□□□□□ -0.18
VRK3-217ENST00000599538 VPS50Q96JG6 964 aa13.94□□□□□ -0.18
VRK3-217ENST00000599538 OSBPL11Q9BXB4 747 aa13.94□□□□□ -0.18
VRK3-217ENST00000599538 OR51B5Q9H339 312 aa13.94□□□□□ -0.18
VRK3-217ENST00000599538 RMND5AQ9H871 391 aa13.94□□□□□ -0.18
VRK3-217ENST00000599538 DYRK1BQ9Y463 629 aa13.94□□□□□ -0.18
VRK3-217ENST00000599538 RNF103-CHMP3A0A140T963 221 aa13.94□□□□□ -0.18
VRK3-217ENST00000599538 FPGTO14772 594 aa13.94□□□□□ -0.18
VRK3-217ENST00000599538 HSD3B1P14060 373 aa13.94□□□□□ -0.18
VRK3-217ENST00000599538 C5AR1P21730 350 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms