RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 MAP2K7O14733 419 aa13.59□□□□□ -0.23
SHKBP1-217ENST00000598558 P2RX6O15547 441 aa13.59□□□□□ -0.23
SHKBP1-217ENST00000598558 MAP3K7O43318 606 aa13.59□□□□□ -0.23
SHKBP1-217ENST00000598558 KERAO60938 352 aa13.59□□□□□ -0.23
SHKBP1-217ENST00000598558 KRT37O76014 449 aa13.59□□□□□ -0.23
SHKBP1-217ENST00000598558 CCNDBP1O95273 360 aa13.59□□□□□ -0.23
SHKBP1-217ENST00000598558 CAPN1P07384 714 aa13.59□□□□□ -0.23
SHKBP1-217ENST00000598558 LIFP15018 202 aa13.59□□□□□ -0.23
SHKBP1-217ENST00000598558 STAT5AP42229 794 aa13.59□□□□□ -0.23
SHKBP1-217ENST00000598558 MAP7Q14244 749 aa13.59□□□□□ -0.23
SHKBP1-217ENST00000598558 ACAP2Q15057 778 aa13.59□□□□□ -0.23
SHKBP1-217ENST00000598558 FAM83EQ2M2I3 478 aa13.59□□□□□ -0.23
SHKBP1-217ENST00000598558 COL28A1Q2UY09 1125 aa13.59□□□□□ -0.23
SHKBP1-217ENST00000598558 TAF1BQ53T94 588 aaPredicted RBP13.59□□□□□ -0.23
SHKBP1-217ENST00000598558 TECRLQ5HYJ1 363 aa13.59□□□□□ -0.23
SHKBP1-217ENST00000598558 ZC3H12BQ5HYM0 836 aaKnown RBP13.59□□□□□ -0.23
SHKBP1-217ENST00000598558 C1orf189Q5VU69 101 aa13.59□□□□□ -0.23
SHKBP1-217ENST00000598558 SULT1C3Q6IMI6 304 aa13.59□□□□□ -0.23
SHKBP1-217ENST00000598558 ZNF517Q6ZMY9 492 aaPredicted RBP13.59□□□□□ -0.23
SHKBP1-217ENST00000598558 LRRC69Q6ZNQ3 347 aa13.59□□□□□ -0.23
SHKBP1-217ENST00000598558 VN1R4Q7Z5H5 301 aa13.59□□□□□ -0.23
SHKBP1-217ENST00000598558 DSELQ8IZU8 1212 aa13.59□□□□□ -0.23
SHKBP1-217ENST00000598558 SHISA5Q8N114 240 aa13.59□□□□□ -0.23
SHKBP1-217ENST00000598558 ARHGEF39Q8N4T4 335 aa13.59□□□□□ -0.23
SHKBP1-217ENST00000598558 ABHD11Q8NFV4 315 aa13.59□□□□□ -0.23
SHKBP1-217ENST00000598558 OR4K1Q8NGD4 311 aa13.59□□□□□ -0.23
SHKBP1-217ENST00000598558 CT55Q8WUE5 264 aa13.59□□□□□ -0.23
SHKBP1-217ENST00000598558 ZFYVE21Q9BQ24 234 aa13.59□□□□□ -0.23
SHKBP1-217ENST00000598558 MACROD1Q9BQ69 325 aa13.59□□□□□ -0.23
SHKBP1-217ENST00000598558 SELENOSQ9BQE4 189 aa13.59□□□□□ -0.23
SHKBP1-217ENST00000598558 PCBD2Q9H0N5 130 aa13.59□□□□□ -0.23
SHKBP1-217ENST00000598558 ACTR5Q9H9F9 607 aaPredicted RBP13.59□□□□□ -0.23
SHKBP1-217ENST00000598558 FANCEQ9HB96 536 aa13.59□□□□□ -0.23
SHKBP1-217ENST00000598558 LHX9Q9NQ69 397 aa13.59□□□□□ -0.23
SHKBP1-217ENST00000598558 SLC22A11Q9NSA0 550 aa13.59□□□□□ -0.23
SHKBP1-217ENST00000598558 CD274Q9NZQ7 290 aa13.59□□□□□ -0.23
SHKBP1-217ENST00000598558 ANKMY1Q9P2S6 941 aa13.59□□□□□ -0.23
SHKBP1-217ENST00000598558 PSMC3IPQ9P2W1 217 aaPredicted RBP13.59□□□□□ -0.23
SHKBP1-217ENST00000598558 MRPS18BQ9Y676 258 aaKnown RBP13.59□□□□□ -0.23
SHKBP1-217ENST00000598558 FITM1A5D6W6 292 aa13.58□□□□□ -0.24
SHKBP1-217ENST00000598558 SMIM23A6NLE4 172 aa13.58□□□□□ -0.24
SHKBP1-217ENST00000598558 GOLGA8RI6L899 631 aa13.58□□□□□ -0.24
SHKBP1-217ENST00000598558 MEN1O00255 615 aa13.58□□□□□ -0.24
SHKBP1-217ENST00000598558 ZSCAN9O15535 394 aaPredicted RBP13.58□□□□□ -0.24
SHKBP1-217ENST00000598558 CPNE3O75131 537 aaKnown RBP13.58□□□□□ -0.24
SHKBP1-217ENST00000598558 WDR47O94967 919 aa13.58□□□□□ -0.24
SHKBP1-217ENST00000598558 EIF2S1P05198 315 aaKnown RBP13.58□□□□□ -0.24
SHKBP1-217ENST00000598558 CCND1P24385 295 aa13.58□□□□□ -0.24
SHKBP1-217ENST00000598558 VARSP26640 1264 aaKnown RBP13.58□□□□□ -0.24
SHKBP1-217ENST00000598558 BCL6P41182 706 aa13.58□□□□□ -0.24
SHKBP1-217ENST00000598558 HNMTP50135 292 aa13.58□□□□□ -0.24
SHKBP1-217ENST00000598558 NFKB2Q00653 900 aa13.58□□□□□ -0.24
SHKBP1-217ENST00000598558 RELAQ04206 551 aa13.58□□□□□ -0.24
SHKBP1-217ENST00000598558 ABHD18Q0P651 414 aa13.58□□□□□ -0.24
SHKBP1-217ENST00000598558 HKDC1Q2TB90 917 aa13.58□□□□□ -0.24
SHKBP1-217ENST00000598558 PRTGQ2VWP7 1150 aa13.58□□□□□ -0.24
SHKBP1-217ENST00000598558 CDKL4Q5MAI5 379 aa13.58□□□□□ -0.24
SHKBP1-217ENST00000598558 FAM69BQ5VUD6 431 aa13.58□□□□□ -0.24
SHKBP1-217ENST00000598558 C16orf46Q6P387 395 aa13.58□□□□□ -0.24
SHKBP1-217ENST00000598558 CYB5D1Q6P9G0 228 aa13.58□□□□□ -0.24
SHKBP1-217ENST00000598558 EMBQ6PCB8 327 aa13.58□□□□□ -0.24
SHKBP1-217ENST00000598558 ADCK2Q7Z695 626 aa13.58□□□□□ -0.24
SHKBP1-217ENST00000598558 CCDC91Q7Z6B0 441 aa13.58□□□□□ -0.24
SHKBP1-217ENST00000598558 TDRPQ86YL5 185 aa13.58□□□□□ -0.24
SHKBP1-217ENST00000598558 ESX1Q8N693 406 aa13.58□□□□□ -0.24
SHKBP1-217ENST00000598558 IL22RA1Q8N6P7 574 aa13.58□□□□□ -0.24
SHKBP1-217ENST00000598558 RHEBL1Q8TAI7 183 aa13.58□□□□□ -0.24
SHKBP1-217ENST00000598558 ZDHHC19Q8WVZ1 309 aaPredicted RBP13.58□□□□□ -0.24
SHKBP1-217ENST00000598558 SLC5A11Q8WWX8 675 aa13.58□□□□□ -0.24
SHKBP1-217ENST00000598558 N4BP2L2Q92802 583 aaPredicted RBP13.58□□□□□ -0.24
SHKBP1-217ENST00000598558 GBP5Q96PP8 586 aa13.58□□□□□ -0.24
SHKBP1-217ENST00000598558 CCNL2Q96S94 520 aaPredicted RBP13.58□□□□□ -0.24
SHKBP1-217ENST00000598558 HAUS8Q9BT25 410 aa13.58□□□□□ -0.24
SHKBP1-217ENST00000598558 CHST8Q9H2A9 424 aa13.58□□□□□ -0.24
SHKBP1-217ENST00000598558 NUDT4Q9NZJ9 180 aa13.58□□□□□ -0.24
SHKBP1-217ENST00000598558 CROTQ9UKG9 612 aa13.58□□□□□ -0.24
SHKBP1-217ENST00000598558 PADI1Q9ULC6 663 aa13.58□□□□□ -0.24
SHKBP1-217ENST00000598558 MRPS2Q9Y399 296 aaKnown RBP13.58□□□□□ -0.24
SHKBP1-217ENST00000598558 EPG5Q9HCE0 2579 aa13.57□□□□□ -0.24
SHKBP1-217ENST00000598558 PABPN1LA6NDY0 278 aaKnown RBP13.57□□□□□ -0.24
SHKBP1-217ENST00000598558 SUPT3HB4E1H0 165 aa13.57□□□□□ -0.24
SHKBP1-217ENST00000598558 KLK8O60259 260 aa13.57□□□□□ -0.24
SHKBP1-217ENST00000598558 SRPX2O60687 465 aaPredicted RBP13.57□□□□□ -0.24
SHKBP1-217ENST00000598558 CNOT3O75175 753 aaKnown RBP13.57□□□□□ -0.24
SHKBP1-217ENST00000598558 SUPT3HO75486 399 aa13.57□□□□□ -0.24
SHKBP1-217ENST00000598558 NUDT17P0C025 328 aa13.57□□□□□ -0.24
SHKBP1-217ENST00000598558 ATXN8OSP0DMR3 200 aa13.57□□□□□ -0.24
SHKBP1-217ENST00000598558 PYGBP11216 843 aa13.57□□□□□ -0.24
SHKBP1-217ENST00000598558 FOXL2P58012 376 aa13.57□□□□□ -0.24
SHKBP1-217ENST00000598558 MANEAQ5SRI9 462 aa13.57□□□□□ -0.24
SHKBP1-217ENST00000598558 RHBDD2Q6NTF9 364 aa13.57□□□□□ -0.24
SHKBP1-217ENST00000598558 TLDC1Q6P9B6 456 aa13.57□□□□□ -0.24
SHKBP1-217ENST00000598558 NXPE4Q6UWF7 544 aa13.57□□□□□ -0.24
SHKBP1-217ENST00000598558 SLCO4C1Q6ZQN7 724 aa13.57□□□□□ -0.24
SHKBP1-217ENST00000598558 TAOK1Q7L7X3 1001 aa13.57□□□□□ -0.24
SHKBP1-217ENST00000598558 GPR135Q8IZ08 494 aa13.57□□□□□ -0.24
SHKBP1-217ENST00000598558 ZBTB9Q96C00 473 aa13.57□□□□□ -0.24
SHKBP1-217ENST00000598558 MTBPQ96DY7 904 aa13.57□□□□□ -0.24
SHKBP1-217ENST00000598558 CLIP3Q96DZ5 547 aa13.57□□□□□ -0.24
SHKBP1-217ENST00000598558 TM4SF19Q96DZ7 209 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms