RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 ATOH1Q92858 354 aaPredicted RBP14.1□□□□□ -0.15
VRK3-212ENST00000596814 USP7Q93009 1102 aa14.1□□□□□ -0.15
VRK3-212ENST00000596814 REPS1Q96D71 796 aa14.1□□□□□ -0.15
VRK3-212ENST00000596814 MAELQ96JY0 434 aaKnown RBP14.1□□□□□ -0.15
VRK3-212ENST00000596814 APOLD1Q96LR9 279 aa14.1□□□□□ -0.15
VRK3-212ENST00000596814 RILPQ96NA2 401 aa14.1□□□□□ -0.15
VRK3-212ENST00000596814 FRG2BQ96QU4 278 aa14.1□□□□□ -0.15
VRK3-212ENST00000596814 CCT7Q99832 543 aa14.1□□□□□ -0.15
VRK3-212ENST00000596814 AIF1LQ9BQI0 150 aa14.1□□□□□ -0.15
VRK3-212ENST00000596814 IRF2BPLQ9H1B7 796 aa14.1□□□□□ -0.15
VRK3-212ENST00000596814 SPNS1Q9H2V7 528 aa14.1□□□□□ -0.15
VRK3-212ENST00000596814 WDR55Q9H6Y2 383 aaPredicted RBP14.1□□□□□ -0.15
VRK3-212ENST00000596814 ZNF490Q9ULM2 529 aaPredicted RBP14.1□□□□□ -0.15
VRK3-212ENST00000596814 PADI4Q9UM07 663 aa14.1□□□□□ -0.15
VRK3-212ENST00000596814 PCDHGA11Q9Y5H2 935 aa14.1□□□□□ -0.15
VRK3-212ENST00000596814 MYO15AQ9UKN7 3530 aa14.1□□□□□ -0.15
VRK3-212ENST00000596814 IGKV1-8A0A0C4DH67 115 aa14.1□□□□□ -0.15
VRK3-212ENST00000596814 GOLGA8QA0A0J9YX86 632 aa14.1□□□□□ -0.15
VRK3-212ENST00000596814 GOLGA8OA6NCC3 632 aa14.1□□□□□ -0.15
VRK3-212ENST00000596814 GOLGA8NF8WBI6 632 aa14.1□□□□□ -0.15
VRK3-212ENST00000596814 H7BY64 318 aa14.1□□□□□ -0.15
VRK3-212ENST00000596814 FKBP9O95302 570 aa14.1□□□□□ -0.15
VRK3-212ENST00000596814 ZNF806P0C7X5 589 aa14.1□□□□□ -0.15
VRK3-212ENST00000596814 LINC00032P0C843 101 aa14.1□□□□□ -0.15
VRK3-212ENST00000596814 MYF5P13349 255 aa14.1□□□□□ -0.15
VRK3-212ENST00000596814 HRH2P25021 359 aa14.1□□□□□ -0.15
VRK3-212ENST00000596814 CXCR2P25025 360 aa14.1□□□□□ -0.15
VRK3-212ENST00000596814 PPM1FP49593 454 aaPredicted RBP14.1□□□□□ -0.15
VRK3-212ENST00000596814 CSNK1G2P78368 415 aa14.1□□□□□ -0.15
VRK3-212ENST00000596814 ABRAXAS2Q15018 415 aa14.1□□□□□ -0.15
VRK3-212ENST00000596814 SGO1Q5FBB7 561 aa14.1□□□□□ -0.15
VRK3-212ENST00000596814 KIAA1614Q5VZ46 1190 aa14.1□□□□□ -0.15
VRK3-212ENST00000596814 SPESP1Q6UW49 350 aa14.1□□□□□ -0.15
VRK3-212ENST00000596814 KRT78Q8N1N4 520 aa14.1□□□□□ -0.15
VRK3-212ENST00000596814 OR6C4Q8NGE1 309 aa14.1□□□□□ -0.15
VRK3-212ENST00000596814 UBE2E3Q969T4 207 aa14.1□□□□□ -0.15
VRK3-212ENST00000596814 PRAP1Q96NZ9 151 aa14.1□□□□□ -0.15
VRK3-212ENST00000596814 HBEGFQ99075 208 aa14.1□□□□□ -0.15
VRK3-212ENST00000596814 PLCD4Q9BRC7 762 aa14.1□□□□□ -0.15
VRK3-212ENST00000596814 DPH7Q9BTV6 452 aa14.1□□□□□ -0.15
VRK3-212ENST00000596814 TCF7L2Q9NQB0 619 aa14.1□□□□□ -0.15
VRK3-212ENST00000596814 FARSBQ9NSD9 589 aaKnown RBP14.1□□□□□ -0.15
VRK3-212ENST00000596814 PDYNP01213 254 aa14.09□□□□□ -0.15
VRK3-212ENST00000596814 PCNAP12004 261 aa14.09□□□□□ -0.15
VRK3-212ENST00000596814 ALDH4A1P30038 563 aa14.09□□□□□ -0.15
VRK3-212ENST00000596814 GPR3P46089 330 aa14.09□□□□□ -0.15
VRK3-212ENST00000596814 NR1D2Q14995 579 aa14.09□□□□□ -0.15
VRK3-212ENST00000596814 SUZ12Q15022 739 aaKnown RBP14.09□□□□□ -0.15
VRK3-212ENST00000596814 INAVAQ3KP66 663 aa14.09□□□□□ -0.15
VRK3-212ENST00000596814 XKR7Q5GH72 579 aa14.09□□□□□ -0.15
VRK3-212ENST00000596814 TRIM73Q86UV7 250 aa14.09□□□□□ -0.15
VRK3-212ENST00000596814 LAS2Q8IYD9 372 aa14.09□□□□□ -0.15
VRK3-212ENST00000596814 OR7G3Q8NG95 312 aa14.09□□□□□ -0.15
VRK3-212ENST00000596814 OR4K1Q8NGD4 311 aa14.09□□□□□ -0.15
VRK3-212ENST00000596814 WDR20Q8TBZ3 569 aa14.09□□□□□ -0.15
VRK3-212ENST00000596814 MTFMTQ96DP5 389 aaKnown RBP14.09□□□□□ -0.15
VRK3-212ENST00000596814 C3orf30Q96M34 536 aa14.09□□□□□ -0.15
VRK3-212ENST00000596814 OR52B2Q96RD2 323 aa14.09□□□□□ -0.15
VRK3-212ENST00000596814 CCDC28BQ9BUN5 200 aa14.09□□□□□ -0.15
VRK3-212ENST00000596814 PITHD1Q9GZP4 211 aaPredicted RBP14.09□□□□□ -0.15
VRK3-212ENST00000596814 EPB41L1Q9H4G0 881 aa14.09□□□□□ -0.15
VRK3-212ENST00000596814 TMEM184CQ9NVA4 438 aa14.09□□□□□ -0.15
VRK3-212ENST00000596814 RIC8BQ9NVN3 520 aa14.09□□□□□ -0.15
VRK3-212ENST00000596814 DNAAF2Q9NVR5 837 aaKnown RBP14.09□□□□□ -0.15
VRK3-212ENST00000596814 POMT2Q9UKY4 750 aa14.09□□□□□ -0.15
VRK3-212ENST00000596814 PCDHGB2Q9Y5G2 931 aa14.09□□□□□ -0.15
VRK3-212ENST00000596814 LY6G6EA0A0G2JKS1 128 aa14.08□□□□□ -0.16
VRK3-212ENST00000596814 A0A0J9YY10 115 aa14.08□□□□□ -0.16
VRK3-212ENST00000596814 ATP6AP2A0A1C7CYW4 349 aa14.08□□□□□ -0.16
VRK3-212ENST00000596814 ATP6AP2O75787 350 aa14.08□□□□□ -0.16
VRK3-212ENST00000596814 GRK3P35626 688 aa14.08□□□□□ -0.16
VRK3-212ENST00000596814 PPP1CAP62136 330 aa14.08□□□□□ -0.16
VRK3-212ENST00000596814 ZNF33BQ06732 778 aa14.08□□□□□ -0.16
VRK3-212ENST00000596814 TUBB3Q13509 450 aa14.08□□□□□ -0.16
VRK3-212ENST00000596814 DDX39BQ13838 428 aaKnown RBP14.08□□□□□ -0.16
VRK3-212ENST00000596814 NAA25Q14CX7 972 aa14.08□□□□□ -0.16
VRK3-212ENST00000596814 SF3A2Q15428 464 aaKnown RBP14.08□□□□□ -0.16
VRK3-212ENST00000596814 IMPG1Q17R60 797 aa14.08□□□□□ -0.16
VRK3-212ENST00000596814 C10orf62Q5T681 223 aaPredicted RBP14.08□□□□□ -0.16
VRK3-212ENST00000596814 NXNQ6DKJ4 435 aa14.08□□□□□ -0.16
VRK3-212ENST00000596814 ZNF425Q6IV72 752 aa14.08□□□□□ -0.16
VRK3-212ENST00000596814 TMIGD1Q6UXZ0 262 aa14.08□□□□□ -0.16
VRK3-212ENST00000596814 ZNF740Q8NDX6 193 aa14.08□□□□□ -0.16
VRK3-212ENST00000596814 ACTRT2Q8TDY3 377 aa14.08□□□□□ -0.16
VRK3-212ENST00000596814 CCDC74AQ96AQ1 378 aa14.08□□□□□ -0.16
VRK3-212ENST00000596814 TUBGCP3Q96CW5 907 aa14.08□□□□□ -0.16
VRK3-212ENST00000596814 AHCYL2Q96HN2 611 aaKnown RBP14.08□□□□□ -0.16
VRK3-212ENST00000596814 PRM3Q9NNZ6 103 aa14.08□□□□□ -0.16
VRK3-212ENST00000596814 FAM86C1Q9NVL1 165 aa14.08□□□□□ -0.16
VRK3-212ENST00000596814 ANKMY1Q9P2S6 941 aa14.08□□□□□ -0.16
VRK3-212ENST00000596814 SNX7Q9UNH6 387 aa14.08□□□□□ -0.16
VRK3-212ENST00000596814 U3KQA8 63 aa14.08□□□□□ -0.16
VRK3-212ENST00000596814 IGHV1OR21-1A0A087WYE8 117 aa14.07□□□□□ -0.16
VRK3-212ENST00000596814 SLC28A1O00337 649 aa14.07□□□□□ -0.16
VRK3-212ENST00000596814 RGS14O43566 566 aa14.07□□□□□ -0.16
VRK3-212ENST00000596814 DUX1O43812 170 aa14.07□□□□□ -0.16
VRK3-212ENST00000596814 VPS4BO75351 444 aa14.07□□□□□ -0.16
VRK3-212ENST00000596814 PNLIPP16233 465 aa14.07□□□□□ -0.16
VRK3-212ENST00000596814 MAGP20916 626 aa14.07□□□□□ -0.16
VRK3-212ENST00000596814 GRIA3P42263 894 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms