RNA–Protein interactions for RNA: ENST00000595242.3

SCAF1-202, Transcript of SR-related CTD associated factor 1, humanhuman

APPRIS ALT2 TSL 3

Gene SCAF1, Length 463 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF1-202ENST00000595242 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.39□□□□□ -0.43
SCAF1-202ENST00000595242 CCDC162PA2VCL2 907 aa12.39□□□□□ -0.43
SCAF1-202ENST00000595242 NPIPB15A6NHN6 443 aaPredicted RBP12.39□□□□□ -0.43
SCAF1-202ENST00000595242 OR5K4A6NMS3 321 aa12.39□□□□□ -0.43
SCAF1-202ENST00000595242 ANKRD66B4E2M5 251 aa12.39□□□□□ -0.43
SCAF1-202ENST00000595242 CD3EAPO15446 510 aaKnown RBP12.39□□□□□ -0.43
SCAF1-202ENST00000595242 ITM2AO43736 263 aa12.39□□□□□ -0.43
SCAF1-202ENST00000595242 SOCS5O75159 536 aa12.39□□□□□ -0.43
SCAF1-202ENST00000595242 SNUPNO95149 360 aaKnown RBP12.39□□□□□ -0.43
SCAF1-202ENST00000595242 PDHA1P08559 390 aa12.39□□□□□ -0.43
SCAF1-202ENST00000595242 SNRPB2P08579 225 aaKnown RBP12.39□□□□□ -0.43
SCAF1-202ENST00000595242 CYP2A6P11509 494 aaPredicted RBP12.39□□□□□ -0.43
SCAF1-202ENST00000595242 ACP5P13686 325 aa12.39□□□□□ -0.43
SCAF1-202ENST00000595242 NELFEP18615 380 aaKnown RBP12.39□□□□□ -0.43
SCAF1-202ENST00000595242 CD9P21926 228 aa12.39□□□□□ -0.43
SCAF1-202ENST00000595242 FDXRP22570 491 aa12.39□□□□□ -0.43
SCAF1-202ENST00000595242 HK2P52789 917 aa12.39□□□□□ -0.43
SCAF1-202ENST00000595242 STC1P52823 247 aa12.39□□□□□ -0.43
SCAF1-202ENST00000595242 SLC12A2P55011 1212 aa12.39□□□□□ -0.43
SCAF1-202ENST00000595242 UBE2IP63279 158 aaKnown RBP12.39□□□□□ -0.43
SCAF1-202ENST00000595242 ASPHQ12797 758 aa12.39□□□□□ -0.43
SCAF1-202ENST00000595242 DLG1Q12959 904 aa12.39□□□□□ -0.43
SCAF1-202ENST00000595242 PTPRRQ15256 657 aa12.39□□□□□ -0.43
SCAF1-202ENST00000595242 TECRLQ5HYJ1 363 aa12.39□□□□□ -0.43
SCAF1-202ENST00000595242 VWA5B1Q5TIE3 1220 aa12.39□□□□□ -0.43
SCAF1-202ENST00000595242 HECTD2Q5U5R9 776 aa12.39□□□□□ -0.43
SCAF1-202ENST00000595242 LYPLAL1Q5VWZ2 237 aa12.39□□□□□ -0.43
SCAF1-202ENST00000595242 LIPMQ5VYY2 423 aa12.39□□□□□ -0.43
SCAF1-202ENST00000595242 RFLNAQ6ZTI6 216 aa12.39□□□□□ -0.43
SCAF1-202ENST00000595242 TMEM26Q6ZUK4 368 aa12.39□□□□□ -0.43
SCAF1-202ENST00000595242 GLT6D1Q7Z4J2 308 aa12.39□□□□□ -0.43
SCAF1-202ENST00000595242 CLNKQ7Z7G1 428 aa12.39□□□□□ -0.43
SCAF1-202ENST00000595242 TSPAN33Q86UF1 283 aa12.39□□□□□ -0.43
SCAF1-202ENST00000595242 WDR75Q8IWA0 830 aaKnown RBP12.39□□□□□ -0.43
SCAF1-202ENST00000595242 GPATCH11Q8N954 259 aa12.39□□□□□ -0.43
SCAF1-202ENST00000595242 LPCAT1Q8NF37 534 aa12.39□□□□□ -0.43
SCAF1-202ENST00000595242 OR4L1Q8NH43 312 aa12.39□□□□□ -0.43
SCAF1-202ENST00000595242 INPP5DQ92835 1189 aa12.39□□□□□ -0.43
SCAF1-202ENST00000595242 MR1Q95460 341 aa12.39□□□□□ -0.43
SCAF1-202ENST00000595242 SCAMP4Q969E2 229 aa12.39□□□□□ -0.43
SCAF1-202ENST00000595242 PLEKHG4BQ96PX9 1271 aa12.39□□□□□ -0.43
SCAF1-202ENST00000595242 OLFM1Q99784 485 aa12.39□□□□□ -0.43
SCAF1-202ENST00000595242 MRPL57Q9BQC6 102 aaKnown RBP12.39□□□□□ -0.43
SCAF1-202ENST00000595242 ABCG8Q9H221 673 aa12.39□□□□□ -0.43
SCAF1-202ENST00000595242 MRPL46Q9H2W6 279 aaKnown RBP12.39□□□□□ -0.43
SCAF1-202ENST00000595242 UCK1Q9HA47 277 aa12.39□□□□□ -0.43
SCAF1-202ENST00000595242 CATSPERZQ9NTU4 200 aa12.39□□□□□ -0.43
SCAF1-202ENST00000595242 ZFP69BQ9UJL9 534 aa12.39□□□□□ -0.43
SCAF1-202ENST00000595242 DCTN4Q9UJW0 460 aa12.39□□□□□ -0.43
SCAF1-202ENST00000595242 SNX7Q9UNH6 387 aa12.39□□□□□ -0.43
SCAF1-202ENST00000595242 PCDHGC4Q9Y5F7 938 aa12.39□□□□□ -0.43
SCAF1-202ENST00000595242 NUP210LQ5VU65 1888 aa12.38□□□□□ -0.43
SCAF1-202ENST00000595242 A0A1W2PQ67 120 aa12.38□□□□□ -0.43
SCAF1-202ENST00000595242 C2orf81A6NN90 581 aa12.38□□□□□ -0.43
SCAF1-202ENST00000595242 HTRA2O43464 458 aaPredicted RBP12.38□□□□□ -0.43
SCAF1-202ENST00000595242 PGLSO95336 258 aa12.38□□□□□ -0.43
SCAF1-202ENST00000595242 LTA4HP09960 611 aaKnown RBP12.38□□□□□ -0.43
SCAF1-202ENST00000595242 FOLR1P15328 257 aa12.38□□□□□ -0.43
SCAF1-202ENST00000595242 ARRB2P32121 409 aa12.38□□□□□ -0.43
SCAF1-202ENST00000595242 SERPINB5P36952 375 aa12.38□□□□□ -0.43
SCAF1-202ENST00000595242 RRADP55042 308 aa12.38□□□□□ -0.43
SCAF1-202ENST00000595242 DNAJB13P59910 316 aa12.38□□□□□ -0.43
SCAF1-202ENST00000595242 ART3Q13508 389 aa12.38□□□□□ -0.43
SCAF1-202ENST00000595242 ITGA9Q13797 1035 aa12.38□□□□□ -0.43
SCAF1-202ENST00000595242 SEMA3AQ14563 771 aa12.38□□□□□ -0.43
SCAF1-202ENST00000595242 KCNAB1Q14722 419 aa12.38□□□□□ -0.43
SCAF1-202ENST00000595242 KRT72Q14CN4 511 aa12.38□□□□□ -0.43
SCAF1-202ENST00000595242 FAM69BQ5VUD6 431 aa12.38□□□□□ -0.43
SCAF1-202ENST00000595242 IGFL3Q6UXB1 125 aa12.38□□□□□ -0.43
SCAF1-202ENST00000595242 ZNF517Q6ZMY9 492 aaPredicted RBP12.38□□□□□ -0.43
SCAF1-202ENST00000595242 TBC1D1Q86TI0 1168 aaPredicted RBP12.38□□□□□ -0.43
SCAF1-202ENST00000595242 FJX1Q86VR8 437 aa12.38□□□□□ -0.43
SCAF1-202ENST00000595242 BPHLQ86WA6 291 aaPredicted RBP12.38□□□□□ -0.43
SCAF1-202ENST00000595242 OR6P1Q8NGX9 317 aa12.38□□□□□ -0.43
SCAF1-202ENST00000595242 PPP4R1Q8TF05 950 aa12.38□□□□□ -0.43
SCAF1-202ENST00000595242 NXNL1Q96CM4 212 aa12.38□□□□□ -0.43
SCAF1-202ENST00000595242 COX14Q96I36 57 aa12.38□□□□□ -0.43
SCAF1-202ENST00000595242 TUBB6Q9BUF5 446 aa12.38□□□□□ -0.43
SCAF1-202ENST00000595242 LRMDAQ9H2I8 198 aa12.38□□□□□ -0.43
SCAF1-202ENST00000595242 RASSF4Q9H2L5 321 aa12.38□□□□□ -0.43
SCAF1-202ENST00000595242 ZNF395Q9H8N7 513 aaPredicted RBP12.38□□□□□ -0.43
SCAF1-202ENST00000595242 MAGEE1Q9HCI5 957 aa12.38□□□□□ -0.43
SCAF1-202ENST00000595242 WASH6PQ9NQA3 447 aa12.38□□□□□ -0.43
SCAF1-202ENST00000595242 LATS2Q9NRM7 1088 aa12.38□□□□□ -0.43
SCAF1-202ENST00000595242 XPR1Q9UBH6 696 aa12.38□□□□□ -0.43
SCAF1-202ENST00000595242 HEY2Q9UBP5 337 aa12.38□□□□□ -0.43
SCAF1-202ENST00000595242 RUVBL2Q9Y230 463 aaKnown RBP12.38□□□□□ -0.43
SCAF1-202ENST00000595242 DNAJC16Q9Y2G8 782 aa12.38□□□□□ -0.43
SCAF1-202ENST00000595242 CACNA1CQ13936 2221 aa12.38□□□□□ -0.43
SCAF1-202ENST00000595242 PCM1Q15154 2024 aa12.37□□□□□ -0.43
SCAF1-202ENST00000595242 A0A0U1RQS6 177 aa12.37□□□□□ -0.43
SCAF1-202ENST00000595242 OR51F1A6NGY5 319 aa12.37□□□□□ -0.43
SCAF1-202ENST00000595242 ZNF195O14628 629 aa12.37□□□□□ -0.43
SCAF1-202ENST00000595242 CPNE3O75131 537 aaKnown RBP12.37□□□□□ -0.43
SCAF1-202ENST00000595242 LYPLA1O75608 230 aaPredicted RBP12.37□□□□□ -0.43
SCAF1-202ENST00000595242 VIPP01282 170 aa12.37□□□□□ -0.43
SCAF1-202ENST00000595242 T-ENOLP0DO92 83 aa12.37□□□□□ -0.43
SCAF1-202ENST00000595242 XRCC1P18887 633 aaPredicted RBP12.37□□□□□ -0.43
SCAF1-202ENST00000595242 SERPINB3P29508 390 aa12.37□□□□□ -0.43
SCAF1-202ENST00000595242 CAPZBP47756 277 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms