RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 NPPAP01160 153 aa9.31□□□□□ -0.92
CCDC40-212ENST00000574799 MSL3P1P0C860 447 aa9.31□□□□□ -0.92
CCDC40-212ENST00000574799 CYP2A6P11509 494 aaPredicted RBP9.31□□□□□ -0.92
CCDC40-212ENST00000574799 POU2F1P14859 743 aa9.31□□□□□ -0.92
CCDC40-212ENST00000574799 CD1DP15813 335 aa9.31□□□□□ -0.92
CCDC40-212ENST00000574799 EPHA2P29317 976 aa9.31□□□□□ -0.92
CCDC40-212ENST00000574799 SSTR4P31391 388 aa9.31□□□□□ -0.92
CCDC40-212ENST00000574799 DNAJA1P31689 397 aaKnown RBP9.31□□□□□ -0.92
CCDC40-212ENST00000574799 SCAPQ12770 1279 aa9.31□□□□□ -0.92
CCDC40-212ENST00000574799 FADDQ13158 208 aa9.31□□□□□ -0.92
CCDC40-212ENST00000574799 MAB21L1Q13394 359 aa9.31□□□□□ -0.92
CCDC40-212ENST00000574799 NFE2L1Q14494 772 aa9.31□□□□□ -0.92
CCDC40-212ENST00000574799 PTPRCAPQ14761 206 aa9.31□□□□□ -0.92
CCDC40-212ENST00000574799 CBX2Q14781 532 aaPredicted RBP9.31□□□□□ -0.92
CCDC40-212ENST00000574799 WSCD2Q2TBF2 565 aa9.31□□□□□ -0.92
CCDC40-212ENST00000574799 PAN2Q504Q3 1202 aaKnown RBP9.31□□□□□ -0.92
CCDC40-212ENST00000574799 TOR2AQ5JU69 321 aa9.31□□□□□ -0.92
CCDC40-212ENST00000574799 CLLU1OSQ5K130 101 aa9.31□□□□□ -0.92
CCDC40-212ENST00000574799 ZNF280BQ86YH2 543 aa9.31□□□□□ -0.92
CCDC40-212ENST00000574799 SLC34A3Q8N130 599 aa9.31□□□□□ -0.92
CCDC40-212ENST00000574799 VANGL1Q8TAA9 524 aaPredicted RBP9.31□□□□□ -0.92
CCDC40-212ENST00000574799 NETO1Q8TDF5 533 aa9.31□□□□□ -0.92
CCDC40-212ENST00000574799 COQ8BQ96D53 544 aa9.31□□□□□ -0.92
CCDC40-212ENST00000574799 SLC39A13Q96H72 371 aa9.31□□□□□ -0.92
CCDC40-212ENST00000574799 FCRL5Q96RD9 977 aa9.31□□□□□ -0.92
CCDC40-212ENST00000574799 HDHD2Q9H0R4 259 aa9.31□□□□□ -0.92
CCDC40-212ENST00000574799 GLTPQ9NZD2 209 aa9.31□□□□□ -0.92
CCDC40-212ENST00000574799 PCDHB5Q9Y5E4 795 aa9.31□□□□□ -0.92
CCDC40-212ENST00000574799 MYO15AQ9UKN7 3530 aa9.31□□□□□ -0.92
CCDC40-212ENST00000574799 NT5C1B-RDH14C9J2C7 533 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 VPS26AO75436 327 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 HLA-DQB2P05538 268 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 TNNI3P19429 210 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 PSMA1P25786 263 aaKnown RBP9.3□□□□□ -0.92
CCDC40-212ENST00000574799 CAMK2GQ13555 558 aaPredicted RBP9.3□□□□□ -0.92
CCDC40-212ENST00000574799 PROX2Q3B8N5 592 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 YIF1BQ5BJH7 314 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 PRSS36Q5K4E3 855 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 LCN1P1Q5VSP4 162 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 OVOS1Q6IE37 1185 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 TIGD7Q6NT04 549 aaPredicted RBP9.3□□□□□ -0.92
CCDC40-212ENST00000574799 ZNF621Q6ZSS3 439 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 TAGAPQ8N103 731 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 VWA5B2Q8N398 1253 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 ESX1Q8N693 406 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 SKA2Q8WVK7 121 aaPredicted RBP9.3□□□□□ -0.92
CCDC40-212ENST00000574799 ASB15Q8WXK1 588 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 DNASE1L2Q92874 299 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 COL21A1Q96P44 957 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 PPP1R2P1Q96PQ5 205 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 BARD1Q99728 777 aaKnown RBP9.3□□□□□ -0.92
CCDC40-212ENST00000574799 HDHD5Q9BXW7 423 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 RNF121Q9H920 327 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 A0A1B0GTL3 188 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 A0A1W2PRG6 482 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 ASPDHA6ND91 283 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 POMCP01189 267 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 PGRP06401 933 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 FPR1P21462 350 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 UGT2B10P36537 528 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 RORCP51449 518 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 CXCR4P61073 352 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 HMGCS1Q01581 520 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 NPRL3Q12980 569 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 GARNL3Q5VVW2 1013 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 FAM122CQ6P4D5 195 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 PLCZ1Q86YW0 608 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 LRRC17Q8N6Y2 441 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 LPCAT1Q8NF37 534 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 PJA1Q8NG27 643 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 SCAMP5Q8TAC9 235 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 HASPINQ8TF76 798 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 VWCEQ96DN2 955 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 MGLLQ99685 303 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 NUSAP1Q9BXS6 441 aaKnown RBP9.3□□□□□ -0.92
CCDC40-212ENST00000574799 CATSPERZQ9NTU4 200 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 THUMPD1Q9NXG2 353 aaKnown RBP9.3□□□□□ -0.92
CCDC40-212ENST00000574799 QPCTLQ9NXS2 382 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 NUP50Q9UKX7 468 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 H3BM21 787 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 NUPL2O15504 423 aaKnown RBP9.3□□□□□ -0.92
CCDC40-212ENST00000574799 PRKAR1AP10644 381 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 DDCP20711 480 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 ARSDP51689 593 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 DGKEP52429 567 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 SEMA3AQ14563 771 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 IHHQ14623 411 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 PTPRNQ16849 979 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 FBXO43Q4G163 708 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 ZMAT1Q5H9K5 638 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 MARC1Q5VT66 337 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 CEP68Q76N32 757 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 SLC51BQ86UW2 128 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 CNTN4Q8IWV2 1026 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 KLHDC8BQ8IXV7 354 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 OR8J3Q8NGG0 315 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 SETD6Q8TBK2 473 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 TSSK3Q96PN8 268 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 GPR21Q99679 349 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 TTLL2Q9BWV7 592 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms