RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 C11orf16Q9NQ32 467 aa13.17□□□□□ -0.3
CCDC40-209ENST00000573474 CUEDC1Q9NWM3 386 aaPredicted RBP13.17□□□□□ -0.3
CCDC40-209ENST00000573474 ARMCX1Q9P291 453 aa13.17□□□□□ -0.3
CCDC40-209ENST00000573474 GIMAP2Q9UG22 337 aa13.17□□□□□ -0.3
CCDC40-209ENST00000573474 ADGRE2Q9UHX3 823 aa13.17□□□□□ -0.3
CCDC40-209ENST00000573474 G3BP2Q9UN86 482 aaKnown RBP13.17□□□□□ -0.3
CCDC40-209ENST00000573474 SNX7Q9UNH6 387 aa13.17□□□□□ -0.3
CCDC40-209ENST00000573474 KNL1Q8NG31 2342 aa13.17□□□□□ -0.3
CCDC40-209ENST00000573474 TDRD6O60522 2096 aaKnown RBP13.16□□□□□ -0.3
CCDC40-209ENST00000573474 ARHGEF17Q96PE2 2063 aaPredicted RBP13.16□□□□□ -0.3
CCDC40-209ENST00000573474 LILRA5A6NI73 299 aa13.16□□□□□ -0.3
CCDC40-209ENST00000573474 CAPN14A8MX76 684 aa13.16□□□□□ -0.3
CCDC40-209ENST00000573474 C2orf74A8MZ97 194 aa13.16□□□□□ -0.3
CCDC40-209ENST00000573474 NPIPB8E9PQR5 432 aa13.16□□□□□ -0.3
CCDC40-209ENST00000573474 FOXE1O00358 373 aaPredicted RBP13.16□□□□□ -0.3
CCDC40-209ENST00000573474 LSM1O15116 133 aaKnown RBP13.16□□□□□ -0.3
CCDC40-209ENST00000573474 SLC22A2O15244 555 aa13.16□□□□□ -0.3
CCDC40-209ENST00000573474 PPM1DO15297 605 aa13.16□□□□□ -0.3
CCDC40-209ENST00000573474 RSL1D1O76021 490 aaKnown RBP13.16□□□□□ -0.3
CCDC40-209ENST00000573474 EPN2O95208 641 aa13.16□□□□□ -0.3
CCDC40-209ENST00000573474 FKBP9O95302 570 aa13.16□□□□□ -0.3
CCDC40-209ENST00000573474 SYPP08247 313 aa13.16□□□□□ -0.3
CCDC40-209ENST00000573474 POLR2CP19387 275 aaPredicted RBP13.16□□□□□ -0.3
CCDC40-209ENST00000573474 ADSLP30566 484 aaPredicted RBP13.16□□□□□ -0.3
CCDC40-209ENST00000573474 SERPINB1P30740 379 aa13.16□□□□□ -0.3
CCDC40-209ENST00000573474 PIK3CBP42338 1070 aa13.16□□□□□ -0.3
CCDC40-209ENST00000573474 ATP4BP51164 291 aa13.16□□□□□ -0.3
CCDC40-209ENST00000573474 ERVK-8P63133 956 aa13.16□□□□□ -0.3
CCDC40-209ENST00000573474 CSNK1G2P78368 415 aa13.16□□□□□ -0.3
CCDC40-209ENST00000573474 PHEXP78562 749 aa13.16□□□□□ -0.3
CCDC40-209ENST00000573474 REEP5Q00765 189 aa13.16□□□□□ -0.3
CCDC40-209ENST00000573474 HMGCS1Q01581 520 aa13.16□□□□□ -0.3
CCDC40-209ENST00000573474 MEF2AQ02078 507 aaPredicted RBP13.16□□□□□ -0.3
CCDC40-209ENST00000573474 EMX2Q04743 252 aa13.16□□□□□ -0.3
CCDC40-209ENST00000573474 MAD2L1Q13257 205 aaPredicted RBP13.16□□□□□ -0.3
CCDC40-209ENST00000573474 RBBP5Q15291 538 aaKnown RBP13.16□□□□□ -0.3
CCDC40-209ENST00000573474 LPAL2Q16609 132 aa13.16□□□□□ -0.3
CCDC40-209ENST00000573474 GSTA3Q16772 222 aa13.16□□□□□ -0.3
CCDC40-209ENST00000573474 AP5B1Q2VPB7 878 aa13.16□□□□□ -0.3
CCDC40-209ENST00000573474 TRIM61Q5EBN2 209 aa13.16□□□□□ -0.3
CCDC40-209ENST00000573474 KLHL35Q6PF15 583 aa13.16□□□□□ -0.3
CCDC40-209ENST00000573474 TMIGD1Q6UXZ0 262 aa13.16□□□□□ -0.3
CCDC40-209ENST00000573474 OOSP2Q86WS3 158 aa13.16□□□□□ -0.3
CCDC40-209ENST00000573474 OR10G6Q8NH81 332 aa13.16□□□□□ -0.3
CCDC40-209ENST00000573474 CMTM7Q96FZ5 175 aa13.16□□□□□ -0.3
CCDC40-209ENST00000573474 OR2A14Q96R47 310 aa13.16□□□□□ -0.3
CCDC40-209ENST00000573474 TBC1D10AQ9BXI6 508 aa13.16□□□□□ -0.3
CCDC40-209ENST00000573474 ACPTQ9BZG2 426 aa13.16□□□□□ -0.3
CCDC40-209ENST00000573474 SPNS1Q9H2V7 528 aa13.16□□□□□ -0.3
CCDC40-209ENST00000573474 RHBGQ9H310 441 aa13.16□□□□□ -0.3
CCDC40-209ENST00000573474 GAREM1Q9H706 876 aa13.16□□□□□ -0.3
CCDC40-209ENST00000573474 LRTM1Q9HBL6 345 aa13.16□□□□□ -0.3
CCDC40-209ENST00000573474 HRASLS2Q9NWW9 162 aa13.16□□□□□ -0.3
CCDC40-209ENST00000573474 ACTR10Q9NZ32 417 aa13.16□□□□□ -0.3
CCDC40-209ENST00000573474 NLGN3Q9NZ94 848 aa13.16□□□□□ -0.3
CCDC40-209ENST00000573474 PCDHGA5Q9Y5G8 931 aa13.16□□□□□ -0.3
CCDC40-209ENST00000573474 COPG1Q9Y678 874 aaKnown RBP13.16□□□□□ -0.3
CCDC40-209ENST00000573474 CAPN7Q9Y6W3 813 aa13.16□□□□□ -0.3
CCDC40-209ENST00000573474 IGKV1-8A0A0C4DH67 115 aa13.15□□□□□ -0.3
CCDC40-209ENST00000573474 GSAPA4D1B5 854 aa13.15□□□□□ -0.3
CCDC40-209ENST00000573474 OR5K3A6NET4 321 aa13.15□□□□□ -0.3
CCDC40-209ENST00000573474 RHPN2P1A8MT19 583 aa13.15□□□□□ -0.3
CCDC40-209ENST00000573474 ARHGAP33O14559 1287 aa13.15□□□□□ -0.3
CCDC40-209ENST00000573474 CER1O95813 267 aa13.15□□□□□ -0.3
CCDC40-209ENST00000573474 GIMD1P0DJR0 217 aa13.15□□□□□ -0.3
CCDC40-209ENST00000573474 ALPPL2P10696 532 aa13.15□□□□□ -0.3
CCDC40-209ENST00000573474 UGT2B7P16662 529 aa13.15□□□□□ -0.3
CCDC40-209ENST00000573474 PRPH2P23942 346 aa13.15□□□□□ -0.3
CCDC40-209ENST00000573474 GRK3P35626 688 aa13.15□□□□□ -0.3
CCDC40-209ENST00000573474 STX1BP61266 288 aa13.15□□□□□ -0.3
CCDC40-209ENST00000573474 BNIP1Q12981 228 aa13.15□□□□□ -0.3
CCDC40-209ENST00000573474 KLF10Q13118 480 aa13.15□□□□□ -0.3
CCDC40-209ENST00000573474 DDX39BQ13838 428 aaKnown RBP13.15□□□□□ -0.3
CCDC40-209ENST00000573474 SQLEQ14534 574 aa13.15□□□□□ -0.3
CCDC40-209ENST00000573474 NAA25Q14CX7 972 aa13.15□□□□□ -0.3
CCDC40-209ENST00000573474 SLC5A12Q1EHB4 618 aa13.15□□□□□ -0.3
CCDC40-209ENST00000573474 LACTB2Q53H82 288 aaPredicted RBP13.15□□□□□ -0.3
CCDC40-209ENST00000573474 KIAA1614Q5VZ46 1190 aa13.15□□□□□ -0.3
CCDC40-209ENST00000573474 ARMC6Q6NXE6 501 aa13.15□□□□□ -0.3
CCDC40-209ENST00000573474 ZC3H14Q6PJT7 736 aaKnown RBP13.15□□□□□ -0.3
CCDC40-209ENST00000573474 KANSL1Q7Z3B3 1105 aa13.15□□□□□ -0.3
CCDC40-209ENST00000573474 ADCK2Q7Z695 626 aa13.15□□□□□ -0.3
CCDC40-209ENST00000573474 ZFAND4Q86XD8 727 aa13.15□□□□□ -0.3
CCDC40-209ENST00000573474 ZNF761Q86XN6 746 aaPredicted RBP13.15□□□□□ -0.3
CCDC40-209ENST00000573474 PARP9Q8IXQ6 854 aa13.15□□□□□ -0.3
CCDC40-209ENST00000573474 TBC1D19Q8N5T2 526 aa13.15□□□□□ -0.3
CCDC40-209ENST00000573474 ARL10Q8N8L6 244 aa13.15□□□□□ -0.3
CCDC40-209ENST00000573474 FNDC5Q8NAU1 212 aa13.15□□□□□ -0.3
CCDC40-209ENST00000573474 KYQ8NBH2 561 aa13.15□□□□□ -0.3
CCDC40-209ENST00000573474 ZNF740Q8NDX6 193 aa13.15□□□□□ -0.3
CCDC40-209ENST00000573474 HUS1BQ8NHY5 278 aa13.15□□□□□ -0.3
CCDC40-209ENST00000573474 FLVCR1-AS1Q8TAF5 88 aa13.15□□□□□ -0.3
CCDC40-209ENST00000573474 SAP25Q8TEE9 199 aa13.15□□□□□ -0.3
CCDC40-209ENST00000573474 NSL1Q96IY1 281 aa13.15□□□□□ -0.3
CCDC40-209ENST00000573474 MARK4Q96L34 752 aa13.15□□□□□ -0.3
CCDC40-209ENST00000573474 MTERF1Q99551 399 aaKnown RBP13.15□□□□□ -0.3
CCDC40-209ENST00000573474 SLC38A3Q99624 504 aa13.15□□□□□ -0.3
CCDC40-209ENST00000573474 DPH7Q9BTV6 452 aa13.15□□□□□ -0.3
CCDC40-209ENST00000573474 DUSP23Q9BVJ7 150 aa13.15□□□□□ -0.3
CCDC40-209ENST00000573474 PRM3Q9NNZ6 103 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms