RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 SLU7O95391 586 aaKnown RBP12.43□□□□□ -0.42
CLK3-224ENST00000568605 EIF2S1P05198 315 aaKnown RBP12.43□□□□□ -0.42
CLK3-224ENST00000568605 RAB40ALP0C0E4 278 aa12.43□□□□□ -0.42
CLK3-224ENST00000568605 TYK2P29597 1187 aa12.43□□□□□ -0.42
CLK3-224ENST00000568605 EMP3P54852 163 aa12.43□□□□□ -0.42
CLK3-224ENST00000568605 CDC20Q12834 499 aa12.43□□□□□ -0.42
CLK3-224ENST00000568605 NCF4Q15080 339 aa12.43□□□□□ -0.42
CLK3-224ENST00000568605 FAM83EQ2M2I3 478 aa12.43□□□□□ -0.42
CLK3-224ENST00000568605 MUM1Q2TAK8 710 aa12.43□□□□□ -0.42
CLK3-224ENST00000568605 PTCHD3Q3KNS1 767 aa12.43□□□□□ -0.42
CLK3-224ENST00000568605 WASHC2DQ5SRD0 308 aa12.43□□□□□ -0.42
CLK3-224ENST00000568605 PRAMEF17Q5VTA0 474 aa12.43□□□□□ -0.42
CLK3-224ENST00000568605 TTLL10Q6ZVT0 673 aa12.43□□□□□ -0.42
CLK3-224ENST00000568605 SYVN1Q86TM6 617 aa12.43□□□□□ -0.42
CLK3-224ENST00000568605 GPSM1Q86YR5 675 aa12.43□□□□□ -0.42
CLK3-224ENST00000568605 SLC38A9Q8NBW4 561 aa12.43□□□□□ -0.42
CLK3-224ENST00000568605 STAG3L4Q8TBR4 150 aa12.43□□□□□ -0.42
CLK3-224ENST00000568605 EXT2Q93063 718 aa12.43□□□□□ -0.42
CLK3-224ENST00000568605 KIAA1191Q96A73 305 aa12.43□□□□□ -0.42
CLK3-224ENST00000568605 PYCR2Q96C36 320 aa12.43□□□□□ -0.42
CLK3-224ENST00000568605 THAP11Q96EK4 314 aa12.43□□□□□ -0.42
CLK3-224ENST00000568605 CABS1Q96KC9 395 aa12.43□□□□□ -0.42
CLK3-224ENST00000568605 CCDC77Q9BR77 488 aa12.43□□□□□ -0.42
CLK3-224ENST00000568605 SPRTNQ9H040 489 aaPredicted RBP12.43□□□□□ -0.42
CLK3-224ENST00000568605 CHST8Q9H2A9 424 aa12.43□□□□□ -0.42
CLK3-224ENST00000568605 ACTL8Q9H568 366 aa12.43□□□□□ -0.42
CLK3-224ENST00000568605 ENAMQ9NRM1 1142 aa12.43□□□□□ -0.42
CLK3-224ENST00000568605 CUTCQ9NTM9 273 aa12.43□□□□□ -0.42
CLK3-224ENST00000568605 CUEDC1Q9NWM3 386 aaPredicted RBP12.43□□□□□ -0.42
CLK3-224ENST00000568605 NUDT4Q9NZJ9 180 aa12.43□□□□□ -0.42
CLK3-224ENST00000568605 CD274Q9NZQ7 290 aa12.43□□□□□ -0.42
CLK3-224ENST00000568605 ZFYVE26Q68DK2 2539 aa12.42□□□□□ -0.42
CLK3-224ENST00000568605 A0A096LPK6 155 aa12.42□□□□□ -0.42
CLK3-224ENST00000568605 HYKKA2RU49 373 aa12.42□□□□□ -0.42
CLK3-224ENST00000568605 FITM1A5D6W6 292 aa12.42□□□□□ -0.42
CLK3-224ENST00000568605 NCF1BA6NI72 391 aaPredicted RBP12.42□□□□□ -0.42
CLK3-224ENST00000568605 NCF1CA8MVU1 366 aaPredicted RBP12.42□□□□□ -0.42
CLK3-224ENST00000568605 H7BY64 318 aa12.42□□□□□ -0.42
CLK3-224ENST00000568605 HAT1O14929 419 aa12.42□□□□□ -0.42
CLK3-224ENST00000568605 KERAO60938 352 aa12.42□□□□□ -0.42
CLK3-224ENST00000568605 WDR47O94967 919 aa12.42□□□□□ -0.42
CLK3-224ENST00000568605 RECKO95980 971 aa12.42□□□□□ -0.42
CLK3-224ENST00000568605 SLC35G6P0C7Q6 338 aa12.42□□□□□ -0.42
CLK3-224ENST00000568605 CDH1P12830 882 aa12.42□□□□□ -0.42
CLK3-224ENST00000568605 NCF1P14598 390 aaPredicted RBP12.42□□□□□ -0.42
CLK3-224ENST00000568605 TFEBP19484 476 aa12.42□□□□□ -0.42
CLK3-224ENST00000568605 PTPN4P29074 926 aa12.42□□□□□ -0.42
CLK3-224ENST00000568605 CCR8P51685 355 aa12.42□□□□□ -0.42
CLK3-224ENST00000568605 YBX1P67809 324 aaKnown RBP12.42□□□□□ -0.42
CLK3-224ENST00000568605 DCDP81605 110 aaKnown RBP12.42□□□□□ -0.42
CLK3-224ENST00000568605 NDUFA9Q16795 377 aa12.42□□□□□ -0.42
CLK3-224ENST00000568605 GARNL3Q5VVW2 1013 aa12.42□□□□□ -0.42
CLK3-224ENST00000568605 ZNF385CQ66K41 422 aaPredicted RBP12.42□□□□□ -0.42
CLK3-224ENST00000568605 SULT1C3Q6IMI6 304 aa12.42□□□□□ -0.42
CLK3-224ENST00000568605 FRMPD2BQ6IN97 320 aa12.42□□□□□ -0.42
CLK3-224ENST00000568605 FAM198BQ6UWH4 519 aa12.42□□□□□ -0.42
CLK3-224ENST00000568605 GSPT2Q8IYD1 628 aaKnown RBP12.42□□□□□ -0.42
CLK3-224ENST00000568605 CSNK1A1LQ8N752 337 aa12.42□□□□□ -0.42
CLK3-224ENST00000568605 ENDOVQ8N8Q3 282 aaKnown RBP12.42□□□□□ -0.42
CLK3-224ENST00000568605 PDPRQ8NCN5 879 aa12.42□□□□□ -0.42
CLK3-224ENST00000568605 SLC5A11Q8WWX8 675 aa12.42□□□□□ -0.42
CLK3-224ENST00000568605 MTBPQ96DY7 904 aa12.42□□□□□ -0.42
CLK3-224ENST00000568605 MVB12AQ96EY5 273 aa12.42□□□□□ -0.42
CLK3-224ENST00000568605 PRAP1Q96NZ9 151 aa12.42□□□□□ -0.42
CLK3-224ENST00000568605 GBP5Q96PP8 586 aa12.42□□□□□ -0.42
CLK3-224ENST00000568605 ARHGAP9Q9BRR9 750 aa12.42□□□□□ -0.42
CLK3-224ENST00000568605 CAPS2Q9BXY5 557 aa12.42□□□□□ -0.42
CLK3-224ENST00000568605 UNKQ9C0B0 810 aaKnown RBP12.42□□□□□ -0.42
CLK3-224ENST00000568605 IFT80Q9P2H3 777 aaPredicted RBP12.42□□□□□ -0.42
CLK3-224ENST00000568605 DHCR7Q9UBM7 475 aaKnown RBP12.42□□□□□ -0.42
CLK3-224ENST00000568605 FETUBQ9UGM5 382 aa12.42□□□□□ -0.42
CLK3-224ENST00000568605 IL17BQ9UHF5 180 aa12.42□□□□□ -0.42
CLK3-224ENST00000568605 IKZF3Q9UKT9 509 aa12.42□□□□□ -0.42
CLK3-224ENST00000568605 KCNE2Q9Y6J6 123 aa12.42□□□□□ -0.42
CLK3-224ENST00000568605 IGSF10Q6WRI0 2623 aa12.42□□□□□ -0.42
CLK3-224ENST00000568605 NBEAQ8NFP9 2946 aa12.41□□□□□ -0.42
CLK3-224ENST00000568605 CACNA1GO43497 2377 aa12.41□□□□□ -0.42
CLK3-224ENST00000568605 IQANK1A0A1B0GTG1 560 aa12.41□□□□□ -0.42
CLK3-224ENST00000568605 SUPT3HB4E1H0 165 aa12.41□□□□□ -0.42
CLK3-224ENST00000568605 H0YGG7 62 aa12.41□□□□□ -0.42
CLK3-224ENST00000568605 TERTO14746 1132 aaKnown RBP12.41□□□□□ -0.42
CLK3-224ENST00000568605 NRP2O60462 931 aa12.41□□□□□ -0.42
CLK3-224ENST00000568605 SUPT3HO75486 399 aa12.41□□□□□ -0.42
CLK3-224ENST00000568605 CREG1O75629 220 aa12.41□□□□□ -0.42
CLK3-224ENST00000568605 KLHL2O95198 593 aa12.41□□□□□ -0.42
CLK3-224ENST00000568605 C2P06681 752 aa12.41□□□□□ -0.42
CLK3-224ENST00000568605 PRKAR1AP10644 381 aa12.41□□□□□ -0.42
CLK3-224ENST00000568605 NPPBP16860 134 aa12.41□□□□□ -0.42
CLK3-224ENST00000568605 GNAZP19086 355 aa12.41□□□□□ -0.42
CLK3-224ENST00000568605 WT1P19544 449 aaPredicted RBP12.41□□□□□ -0.42
CLK3-224ENST00000568605 ALAS2P22557 587 aa12.41□□□□□ -0.42
CLK3-224ENST00000568605 ARF3P61204 181 aaPredicted RBP12.41□□□□□ -0.42
CLK3-224ENST00000568605 OR4D1Q15615 310 aa12.41□□□□□ -0.42
CLK3-224ENST00000568605 TSNAXIP1Q2TAA8 658 aa12.41□□□□□ -0.42
CLK3-224ENST00000568605 UBAP2Q5T6F2 1119 aaKnown RBP12.41□□□□□ -0.42
CLK3-224ENST00000568605 C1orf189Q5VU69 101 aa12.41□□□□□ -0.42
CLK3-224ENST00000568605 PRMT9Q6P2P2 845 aa12.41□□□□□ -0.42
CLK3-224ENST00000568605 C16orf46Q6P387 395 aa12.41□□□□□ -0.42
CLK3-224ENST00000568605 FAM199XQ6PEV8 388 aaPredicted RBP12.41□□□□□ -0.42
CLK3-224ENST00000568605 TMPRSS11BQ86T26 416 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms