RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 CCR7P32248 378 aa6.92□□□□□ -1.3
VPS4A-203ENST00000564399 PTGER1P34995 402 aa6.92□□□□□ -1.3
VPS4A-203ENST00000564399 SLC26A3P40879 764 aa6.92□□□□□ -1.3
VPS4A-203ENST00000564399 DGKQP52824 942 aa6.92□□□□□ -1.3
VPS4A-203ENST00000564399 EMP3P54852 163 aa6.92□□□□□ -1.3
VPS4A-203ENST00000564399 MAT1AQ00266 395 aaKnown RBP6.92□□□□□ -1.3
VPS4A-203ENST00000564399 GRB7Q14451 532 aa6.92□□□□□ -1.3
VPS4A-203ENST00000564399 NR1I3Q14994 352 aa6.92□□□□□ -1.3
VPS4A-203ENST00000564399 SKOR2Q2VWA4 1001 aaPredicted RBP6.92□□□□□ -1.3
VPS4A-203ENST00000564399 PRTGQ2VWP7 1150 aa6.92□□□□□ -1.3
VPS4A-203ENST00000564399 MINDY4Q4G0A6 757 aa6.92□□□□□ -1.3
VPS4A-203ENST00000564399 ANKRD20A2Q5SQ80 823 aa6.92□□□□□ -1.3
VPS4A-203ENST00000564399 CCDC181Q5TID7 509 aa6.92□□□□□ -1.3
VPS4A-203ENST00000564399 ANKRD20A1Q5TYW2 823 aa6.92□□□□□ -1.3
VPS4A-203ENST00000564399 ANKRD20A3Q5VUR7 823 aa6.92□□□□□ -1.3
VPS4A-203ENST00000564399 PLAG1Q6DJT9 500 aa6.92□□□□□ -1.3
VPS4A-203ENST00000564399 DENND5AQ6IQ26 1287 aa6.92□□□□□ -1.3
VPS4A-203ENST00000564399 H3F3CQ6NXT2 135 aa6.92□□□□□ -1.3
VPS4A-203ENST00000564399 LRRC8BQ6P9F7 803 aa6.92□□□□□ -1.3
VPS4A-203ENST00000564399 UNC5DQ6UXZ4 953 aa6.92□□□□□ -1.3
VPS4A-203ENST00000564399 PACS1Q6VY07 963 aa6.92□□□□□ -1.3
VPS4A-203ENST00000564399 LANCL3Q6ZV70 420 aa6.92□□□□□ -1.3
VPS4A-203ENST00000564399 RNF44Q7L0R7 432 aa6.92□□□□□ -1.3
VPS4A-203ENST00000564399 BIVMQ86UB2 503 aa6.92□□□□□ -1.3
VPS4A-203ENST00000564399 CCDC71Q8IV32 467 aaPredicted RBP6.92□□□□□ -1.3
VPS4A-203ENST00000564399 VRK3Q8IV63 474 aa6.92□□□□□ -1.3
VPS4A-203ENST00000564399 ZC3H7AQ8IWR0 971 aaKnown RBP6.92□□□□□ -1.3
VPS4A-203ENST00000564399 CHERPQ8IWX8 916 aaKnown RBP6.92□□□□□ -1.3
VPS4A-203ENST00000564399 CLYBLQ8N0X4 340 aa6.92□□□□□ -1.3
VPS4A-203ENST00000564399 MARVELD2Q8N4S9 558 aa6.92□□□□□ -1.3
VPS4A-203ENST00000564399 CPSF7Q8N684 471 aaKnown RBP6.92□□□□□ -1.3
VPS4A-203ENST00000564399 CSNK1A1LQ8N752 337 aa6.92□□□□□ -1.3
VPS4A-203ENST00000564399 AMER3Q8N944 861 aa6.92□□□□□ -1.3
VPS4A-203ENST00000564399 OR2L3Q8NG85 312 aa6.92□□□□□ -1.3
VPS4A-203ENST00000564399 GSDMBQ8TAX9 411 aa6.92□□□□□ -1.3
VPS4A-203ENST00000564399 FAM57AQ8TBR7 257 aa6.92□□□□□ -1.3
VPS4A-203ENST00000564399 STYXQ8WUJ0 223 aa6.92□□□□□ -1.3
VPS4A-203ENST00000564399 SKA2Q8WVK7 121 aaPredicted RBP6.92□□□□□ -1.3
VPS4A-203ENST00000564399 ASZ1Q8WWH4 475 aa6.92□□□□□ -1.3
VPS4A-203ENST00000564399 NANOS1Q8WY41 292 aaKnown RBP6.92□□□□□ -1.3
VPS4A-203ENST00000564399 RAD51AP1Q96B01 352 aa6.92□□□□□ -1.3
VPS4A-203ENST00000564399 CYTH2Q99418 400 aa6.92□□□□□ -1.3
VPS4A-203ENST00000564399 TTC1Q99614 292 aa6.92□□□□□ -1.3
VPS4A-203ENST00000564399 DPH7Q9BTV6 452 aa6.92□□□□□ -1.3
VPS4A-203ENST00000564399 ACAT2Q9BWD1 397 aa6.92□□□□□ -1.3
VPS4A-203ENST00000564399 TSSK1BQ9BXA7 367 aa6.92□□□□□ -1.3
VPS4A-203ENST00000564399 DRC3Q9H069 523 aa6.92□□□□□ -1.3
VPS4A-203ENST00000564399 LIME1Q9H400 295 aa6.92□□□□□ -1.3
VPS4A-203ENST00000564399 DLL4Q9NR61 685 aa6.92□□□□□ -1.3
VPS4A-203ENST00000564399 LRFN1Q9P244 771 aa6.92□□□□□ -1.3
VPS4A-203ENST00000564399 C19orf25Q9UFG5 118 aaPredicted RBP6.92□□□□□ -1.3
VPS4A-203ENST00000564399 FEZ2Q9UHY8 353 aaPredicted RBP6.92□□□□□ -1.3
VPS4A-203ENST00000564399 GNPTGQ9UJJ9 305 aa6.92□□□□□ -1.3
VPS4A-203ENST00000564399 NENFQ9UMX5 172 aa6.92□□□□□ -1.3
VPS4A-203ENST00000564399 RUVBL1Q9Y265 456 aaKnown RBP6.92□□□□□ -1.3
VPS4A-203ENST00000564399 PLEKHA6Q9Y2H5 1048 aa6.92□□□□□ -1.3
VPS4A-203ENST00000564399 HIVEP2P31629 2446 aa6.91□□□□□ -1.3
VPS4A-203ENST00000564399 STAB1Q9NY15 2570 aa6.91□□□□□ -1.3
VPS4A-203ENST00000564399 ATRQ13535 2644 aa6.91□□□□□ -1.3
VPS4A-203ENST00000564399 FAM237BA0A1B0GVD1 139 aa6.91□□□□□ -1.3
VPS4A-203ENST00000564399 MACROD2A1Z1Q3 448 aa6.91□□□□□ -1.3
VPS4A-203ENST00000564399 OR2A25A4D2G3 310 aa6.91□□□□□ -1.3
VPS4A-203ENST00000564399 TFECO14948 347 aaPredicted RBP6.91□□□□□ -1.3
VPS4A-203ENST00000564399 MAN1A2O60476 641 aa6.91□□□□□ -1.3
VPS4A-203ENST00000564399 SLC25A12O75746 678 aa6.91□□□□□ -1.3
VPS4A-203ENST00000564399 COMTP21964 271 aa6.91□□□□□ -1.3
VPS4A-203ENST00000564399 CMPK1P30085 196 aa6.91□□□□□ -1.3
VPS4A-203ENST00000564399 ADSLP30566 484 aaPredicted RBP6.91□□□□□ -1.3
VPS4A-203ENST00000564399 SLC1A1P43005 524 aa6.91□□□□□ -1.3
VPS4A-203ENST00000564399 BDKRB1P46663 353 aa6.91□□□□□ -1.3
VPS4A-203ENST00000564399 MEOX1P50221 254 aa6.91□□□□□ -1.3
VPS4A-203ENST00000564399 TAS2R50P59544 299 aa6.91□□□□□ -1.3
VPS4A-203ENST00000564399 ADAM8P78325 824 aa6.91□□□□□ -1.3
VPS4A-203ENST00000564399 TYRO3Q06418 890 aa6.91□□□□□ -1.3
VPS4A-203ENST00000564399 TFF3Q07654 80 aa6.91□□□□□ -1.3
VPS4A-203ENST00000564399 ACTN3Q08043 901 aaPredicted RBP6.91□□□□□ -1.3
VPS4A-203ENST00000564399 PMPCAQ10713 525 aa6.91□□□□□ -1.3
VPS4A-203ENST00000564399 TSTA3Q13630 321 aaPredicted RBP6.91□□□□□ -1.3
VPS4A-203ENST00000564399 POU6F1Q14863 301 aa6.91□□□□□ -1.3
VPS4A-203ENST00000564399 NAA25Q14CX7 972 aa6.91□□□□□ -1.3
VPS4A-203ENST00000564399 TMED2Q15363 201 aa6.91□□□□□ -1.3
VPS4A-203ENST00000564399 SLC18A3Q16572 532 aa6.91□□□□□ -1.3
VPS4A-203ENST00000564399 HKDC1Q2TB90 917 aa6.91□□□□□ -1.3
VPS4A-203ENST00000564399 RNFT1Q5M7Z0 435 aa6.91□□□□□ -1.3
VPS4A-203ENST00000564399 GARNL3Q5VVW2 1013 aa6.91□□□□□ -1.3
VPS4A-203ENST00000564399 FBXO42Q6P3S6 717 aa6.91□□□□□ -1.3
VPS4A-203ENST00000564399 FGD2Q7Z6J4 655 aa6.91□□□□□ -1.3
VPS4A-203ENST00000564399 RHOT2Q8IXI1 618 aa6.91□□□□□ -1.3
VPS4A-203ENST00000564399 SLC5A8Q8N695 610 aa6.91□□□□□ -1.3
VPS4A-203ENST00000564399 OR10Q1Q8NGQ4 319 aa6.91□□□□□ -1.3
VPS4A-203ENST00000564399 OR2A1Q8NGT9 310 aa6.91□□□□□ -1.3
VPS4A-203ENST00000564399 HDAC10Q969S8 669 aa6.91□□□□□ -1.3
VPS4A-203ENST00000564399 RERGQ96A58 199 aaPredicted RBP6.91□□□□□ -1.3
VPS4A-203ENST00000564399 RMND5BQ96G75 393 aaPredicted RBP6.91□□□□□ -1.3
VPS4A-203ENST00000564399 SEC16BQ96JE7 1060 aa6.91□□□□□ -1.3
VPS4A-203ENST00000564399 PWWP2AQ96N64 755 aa6.91□□□□□ -1.3
VPS4A-203ENST00000564399 PPP1R2P1Q96PQ5 205 aa6.91□□□□□ -1.3
VPS4A-203ENST00000564399 SMR3AQ99954 134 aa6.91□□□□□ -1.3
VPS4A-203ENST00000564399 HEMGNQ9BXL5 484 aa6.91□□□□□ -1.3
VPS4A-203ENST00000564399 VN1R1Q9GZP7 353 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms