RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 ANKRD28O15084 1053 aa20.48■□□□□ 0.87
CLN3-209ENST00000561689 BCKDHAP12694 445 aa20.48■□□□□ 0.87
CLN3-209ENST00000561689 PRPH2P23942 346 aa20.48■□□□□ 0.87
CLN3-209ENST00000561689 BLKP51451 505 aa20.48■□□□□ 0.87
CLN3-209ENST00000561689 RPS13P62277 151 aaKnown RBP20.48■□□□□ 0.87
CLN3-209ENST00000561689 LAPTM5Q13571 262 aa20.48■□□□□ 0.87
CLN3-209ENST00000561689 ICE2Q659A1 982 aa20.48■□□□□ 0.87
CLN3-209ENST00000561689 RIPOR1Q6ZS17 1223 aa20.48■□□□□ 0.87
CLN3-209ENST00000561689 AMIGO1Q86WK6 493 aa20.48■□□□□ 0.87
CLN3-209ENST00000561689 DCP2Q8IU60 420 aaKnown RBP20.48■□□□□ 0.87
CLN3-209ENST00000561689 EFCAB3Q8N7B9 438 aa20.48■□□□□ 0.87
CLN3-209ENST00000561689 CLHC1Q8NHS4 586 aa20.48■□□□□ 0.87
CLN3-209ENST00000561689 VPS33AQ96AX1 596 aa20.48■□□□□ 0.87
CLN3-209ENST00000561689 A0A088AWK7 358 aa20.47■□□□□ 0.87
CLN3-209ENST00000561689 MRASO14807 208 aa20.47■□□□□ 0.87
CLN3-209ENST00000561689 AMD1P17707 334 aa20.47■□□□□ 0.87
CLN3-209ENST00000561689 POLR2JP52435 117 aaKnown RBP20.47■□□□□ 0.87
CLN3-209ENST00000561689 KCNK10P57789 538 aa20.47■□□□□ 0.87
CLN3-209ENST00000561689 TBL3Q12788 808 aaKnown RBP20.47■□□□□ 0.87
CLN3-209ENST00000561689 RBBP5Q15291 538 aaKnown RBP20.47■□□□□ 0.87
CLN3-209ENST00000561689 SF1Q15637 639 aaKnown RBP20.47■□□□□ 0.87
CLN3-209ENST00000561689 TMIGD1Q6UXZ0 262 aa20.47■□□□□ 0.87
CLN3-209ENST00000561689 RETREG3Q86VR2 466 aa20.47■□□□□ 0.87
CLN3-209ENST00000561689 SCUBE1Q8IWY4 988 aa20.47■□□□□ 0.87
CLN3-209ENST00000561689 TRIM48Q8IWZ4 208 aa20.47■□□□□ 0.87
CLN3-209ENST00000561689 ULK2Q8IYT8 1036 aa20.47■□□□□ 0.87
CLN3-209ENST00000561689 ABCA7Q8IZY2 2146 aa20.47■□□□□ 0.87
CLN3-209ENST00000561689 ARHGAP24Q8N264 748 aa20.47■□□□□ 0.87
CLN3-209ENST00000561689 C1orf216Q8TAB5 229 aa20.47■□□□□ 0.87
CLN3-209ENST00000561689 SPDL1Q96EA4 605 aa20.47■□□□□ 0.87
CLN3-209ENST00000561689 LRRC61Q9BV99 259 aa20.47■□□□□ 0.87
CLN3-209ENST00000561689 BRF2Q9HAW0 419 aa20.47■□□□□ 0.87
CLN3-209ENST00000561689 SLC52A3Q9NQ40 469 aa20.47■□□□□ 0.87
CLN3-209ENST00000561689 PCDHB11Q9Y5F2 797 aa20.47■□□□□ 0.87
CLN3-209ENST00000561689 NPIPB8E9PQR5 432 aa20.46■□□□□ 0.87
CLN3-209ENST00000561689 CFLARO15519 480 aa20.46■□□□□ 0.87
CLN3-209ENST00000561689 KDM1AO60341 852 aa20.46■□□□□ 0.87
CLN3-209ENST00000561689 FNTBP49356 437 aa20.46■□□□□ 0.87
CLN3-209ENST00000561689 CCR8P51685 355 aa20.46■□□□□ 0.87
CLN3-209ENST00000561689 PRDX1Q06830 199 aaKnown RBP20.46■□□□□ 0.87
CLN3-209ENST00000561689 RCAN2Q14206 197 aa20.46■□□□□ 0.87
CLN3-209ENST00000561689 C16orf89Q6UX73 402 aa20.46■□□□□ 0.87
CLN3-209ENST00000561689 MAMSTRQ6ZN01 415 aa20.46■□□□□ 0.87
CLN3-209ENST00000561689 LPCAT2Q7L5N7 544 aa20.46■□□□□ 0.87
CLN3-209ENST00000561689 KRT78Q8N1N4 520 aa20.46■□□□□ 0.87
CLN3-209ENST00000561689 ABHD11Q8NFV4 315 aa20.46■□□□□ 0.87
CLN3-209ENST00000561689 EBPLQ9BY08 206 aa20.46■□□□□ 0.87
CLN3-209ENST00000561689 MMADHCQ9H3L0 296 aaPredicted RBP20.46■□□□□ 0.87
CLN3-209ENST00000561689 WDR41Q9HAD4 459 aa20.46■□□□□ 0.87
CLN3-209ENST00000561689 PELI2Q9HAT8 420 aa20.46■□□□□ 0.87
CLN3-209ENST00000561689 ASIC5Q9NY37 505 aa20.46■□□□□ 0.87
CLN3-209ENST00000561689 A0A0C4DFX4 3053 aa20.46■□□□□ 0.87
CLN3-209ENST00000561689 FEZF1A0PJY2 475 aa20.46■□□□□ 0.87
CLN3-209ENST00000561689 ANGPT2O15123 496 aa20.46■□□□□ 0.87
CLN3-209ENST00000561689 HSD3B1P14060 373 aa20.46■□□□□ 0.87
CLN3-209ENST00000561689 TACR1P25103 407 aa20.46■□□□□ 0.87
CLN3-209ENST00000561689 HSD3B2P26439 372 aa20.46■□□□□ 0.87
CLN3-209ENST00000561689 PEBP1P30086 187 aaKnown RBP20.46■□□□□ 0.87
CLN3-209ENST00000561689 SHMT2P34897 504 aa20.46■□□□□ 0.87
CLN3-209ENST00000561689 IQCHQ86VS3 1027 aa20.46■□□□□ 0.87
CLN3-209ENST00000561689 NDUFAF1Q9Y375 327 aa20.46■□□□□ 0.87
CLN3-209ENST00000561689 LRP4O75096 1905 aa20.46■□□□□ 0.87
CLN3-209ENST00000561689 IGKV1-8A0A0C4DH67 115 aa20.45■□□□□ 0.86
CLN3-209ENST00000561689 FAM234BA2RU67 622 aa20.45■□□□□ 0.86
CLN3-209ENST00000561689 PDE5AO76074 875 aa20.45■□□□□ 0.86
CLN3-209ENST00000561689 TGFB1P01137 390 aa20.45■□□□□ 0.86
CLN3-209ENST00000561689 CSF2P04141 144 aa20.45■□□□□ 0.86
CLN3-209ENST00000561689 CSNK1EP49674 416 aaKnown RBP20.45■□□□□ 0.86
CLN3-209ENST00000561689 GPR18Q14330 331 aa20.45■□□□□ 0.86
CLN3-209ENST00000561689 PLCL1Q15111 1095 aa20.45■□□□□ 0.86
CLN3-209ENST00000561689 TIGD2Q4W5G0 525 aa20.45■□□□□ 0.86
CLN3-209ENST00000561689 NOXRED1Q6NXP6 359 aa20.45■□□□□ 0.86
CLN3-209ENST00000561689 ADCK2Q7Z695 626 aa20.45■□□□□ 0.86
CLN3-209ENST00000561689 KRTCAP2Q8N6L1 136 aa20.45■□□□□ 0.86
CLN3-209ENST00000561689 FAM46DQ8NEK8 389 aa20.45■□□□□ 0.86
CLN3-209ENST00000561689 EDAQ92838 391 aa20.45■□□□□ 0.86
CLN3-209ENST00000561689 UBE2E3Q969T4 207 aa20.45■□□□□ 0.86
CLN3-209ENST00000561689 AIF1LQ9BQI0 150 aa20.45■□□□□ 0.86
CLN3-209ENST00000561689 SRMSQ9H3Y6 488 aa20.45■□□□□ 0.86
CLN3-209ENST00000561689 DMRT3Q9NQL9 472 aa20.45■□□□□ 0.86
CLN3-209ENST00000561689 OR6C2Q9NZP2 312 aa20.45■□□□□ 0.86
CLN3-209ENST00000561689 CPNE7Q9UBL6 633 aa20.45■□□□□ 0.86
CLN3-209ENST00000561689 PACSIN3Q9UKS6 424 aa20.45■□□□□ 0.86
CLN3-209ENST00000561689 TMED5Q9Y3A6 229 aa20.45■□□□□ 0.86
CLN3-209ENST00000561689 CCDC154A6NI56 674 aa20.45■□□□□ 0.86
CLN3-209ENST00000561689 BBIP1A8MTZ0 92 aa20.45■□□□□ 0.86
CLN3-209ENST00000561689 FOXE1O00358 373 aaPredicted RBP20.45■□□□□ 0.86
CLN3-209ENST00000561689 PRICKLE3O43900 615 aaPredicted RBP20.45■□□□□ 0.86
CLN3-209ENST00000561689 VIPP01282 170 aa20.45■□□□□ 0.86
CLN3-209ENST00000561689 CHRM5P08912 532 aaPredicted RBP20.45■□□□□ 0.86
CLN3-209ENST00000561689 SDC1P18827 310 aa20.45■□□□□ 0.86
CLN3-209ENST00000561689 JAK1P23458 1154 aa20.45■□□□□ 0.86
CLN3-209ENST00000561689 VN1R5Q7Z5H4 357 aa20.45■□□□□ 0.86
CLN3-209ENST00000561689 NAGSQ8N159 534 aa20.45■□□□□ 0.86
CLN3-209ENST00000561689 GPR156Q8NFN8 814 aa20.45■□□□□ 0.86
CLN3-209ENST00000561689 TSSK3Q96PN8 268 aa20.45■□□□□ 0.86
CLN3-209ENST00000561689 DPY30Q9C005 99 aa20.45■□□□□ 0.86
CLN3-209ENST00000561689 DUSP15Q9H1R2 295 aaPredicted RBP20.45■□□□□ 0.86
CLN3-209ENST00000561689 OR51B5Q9H339 312 aa20.45■□□□□ 0.86
CLN3-209ENST00000561689 DENND2DQ9H6A0 471 aaPredicted RBP20.45■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms