RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 ESR1P03372 595 aa15.58■□□□□ 0.08
CLN3-208ENST00000561505 EIF2S1P05198 315 aaKnown RBP15.58■□□□□ 0.08
CLN3-208ENST00000561505 CELA2AP08217 269 aa15.58■□□□□ 0.08
CLN3-208ENST00000561505 PKMP14618 531 aaKnown RBP15.58■□□□□ 0.08
CLN3-208ENST00000561505 EZRP15311 586 aaKnown RBP15.58■□□□□ 0.08
CLN3-208ENST00000561505 NMBRP28336 390 aa15.58■□□□□ 0.08
CLN3-208ENST00000561505 RPL22P35268 128 aaKnown RBP15.58■□□□□ 0.08
CLN3-208ENST00000561505 HSD17B2P37059 387 aa15.58■□□□□ 0.08
CLN3-208ENST00000561505 ZNF75DP51815 510 aa15.58■□□□□ 0.08
CLN3-208ENST00000561505 SIX1Q15475 284 aaPredicted RBP15.58■□□□□ 0.08
CLN3-208ENST00000561505 HKDC1Q2TB90 917 aa15.58■□□□□ 0.08
CLN3-208ENST00000561505 ANKRD20A4Q4UJ75 823 aa15.58■□□□□ 0.08
CLN3-208ENST00000561505 LRRC8BQ6P9F7 803 aa15.58■□□□□ 0.08
CLN3-208ENST00000561505 TMEM207Q6UWW9 146 aa15.58■□□□□ 0.08
CLN3-208ENST00000561505 PCGF5Q86SE9 256 aa15.58■□□□□ 0.08
CLN3-208ENST00000561505 PRUNE1Q86TP1 453 aa15.58■□□□□ 0.08
CLN3-208ENST00000561505 SLC13A5Q86YT5 568 aaPredicted RBP15.58■□□□□ 0.08
CLN3-208ENST00000561505 LRRC56Q8IYG6 542 aaPredicted RBP15.58■□□□□ 0.08
CLN3-208ENST00000561505 RNF10Q8N5U6 811 aaKnown RBP15.58■□□□□ 0.08
CLN3-208ENST00000561505 CSNK1A1LQ8N752 337 aa15.58■□□□□ 0.08
CLN3-208ENST00000561505 CABS1Q96KC9 395 aa15.58■□□□□ 0.08
CLN3-208ENST00000561505 TUBB6Q9BUF5 446 aa15.58■□□□□ 0.08
CLN3-208ENST00000561505 MRPS30Q9NP92 439 aaKnown RBP15.58■□□□□ 0.08
CLN3-208ENST00000561505 ZNF148Q9UQR1 794 aa15.58■□□□□ 0.08
CLN3-208ENST00000561505 DRG1Q9Y295 367 aaKnown RBP15.58■□□□□ 0.08
CLN3-208ENST00000561505 ZNF835Q9Y2P0 537 aa15.58■□□□□ 0.08
CLN3-208ENST00000561505 HEATR5BQ9P2D3 2071 aa15.58■□□□□ 0.08
CLN3-208ENST00000561505 NCOA6Q14686 2063 aaPredicted RBP15.57■□□□□ 0.08
CLN3-208ENST00000561505 E7ENX8 843 aa15.57■□□□□ 0.08
CLN3-208ENST00000561505 PRAMEF2O60811 474 aa15.57■□□□□ 0.08
CLN3-208ENST00000561505 RASAL1O95294 804 aa15.57■□□□□ 0.08
CLN3-208ENST00000561505 ERVK-10P10266 1014 aa15.57■□□□□ 0.08
CLN3-208ENST00000561505 ABATP80404 500 aa15.57■□□□□ 0.08
CLN3-208ENST00000561505 TAP2Q03519 686 aa15.57■□□□□ 0.08
CLN3-208ENST00000561505 EEF1A2Q05639 463 aaKnown RBP15.57■□□□□ 0.08
CLN3-208ENST00000561505 KIF5AQ12840 1032 aa15.57■□□□□ 0.08
CLN3-208ENST00000561505 NAA30Q147X3 362 aaPredicted RBP15.57■□□□□ 0.08
CLN3-208ENST00000561505 CCNG2Q16589 344 aa15.57■□□□□ 0.08
CLN3-208ENST00000561505 ICE2Q659A1 982 aa15.57■□□□□ 0.08
CLN3-208ENST00000561505 HIBCHQ6NVY1 386 aaPredicted RBP15.57■□□□□ 0.08
CLN3-208ENST00000561505 XKRXQ6PP77 449 aa15.57■□□□□ 0.08
CLN3-208ENST00000561505 C4orf22Q6V702 233 aa15.57■□□□□ 0.08
CLN3-208ENST00000561505 NEK10Q6ZWH5 1172 aa15.57■□□□□ 0.08
CLN3-208ENST00000561505 MRGPRGQ86SM5 289 aa15.57■□□□□ 0.08
CLN3-208ENST00000561505 PHF12Q96QT6 1004 aa15.57■□□□□ 0.08
CLN3-208ENST00000561505 DRC3Q9H069 523 aa15.57■□□□□ 0.08
CLN3-208ENST00000561505 KLHL42Q9P2K6 505 aa15.57■□□□□ 0.08
CLN3-208ENST00000561505 GALPQ9UBC7 116 aa15.57■□□□□ 0.08
CLN3-208ENST00000561505 CAPN6Q9Y6Q1 641 aa15.57■□□□□ 0.08
CLN3-208ENST00000561505 ADGRG4Q8IZF6 3080 aa15.57■□□□□ 0.08
CLN3-208ENST00000561505 CSMD2Q7Z408 3487 aa15.56■□□□□ 0.08
CLN3-208ENST00000561505 AKAP9Q99996 3911 aa15.56■□□□□ 0.08
CLN3-208ENST00000561505 HIVEP1P15822 2718 aa15.56■□□□□ 0.08
CLN3-208ENST00000561505 KCNE1BA0A087WTH5 132 aa15.56■□□□□ 0.08
CLN3-208ENST00000561505 H0YIG0 161 aa15.56■□□□□ 0.08
CLN3-208ENST00000561505 NIPSNAP2O75323 286 aa15.56■□□□□ 0.08
CLN3-208ENST00000561505 WISP2O76076 250 aa15.56■□□□□ 0.08
CLN3-208ENST00000561505 UNC5CO95185 931 aa15.56■□□□□ 0.08
CLN3-208ENST00000561505 HEXBP07686 556 aa15.56■□□□□ 0.08
CLN3-208ENST00000561505 EIF3BP55884 814 aaKnown RBP15.56■□□□□ 0.08
CLN3-208ENST00000561505 SNRPNP63162 240 aaKnown RBP15.56■□□□□ 0.08
CLN3-208ENST00000561505 CRADDP78560 199 aa15.56■□□□□ 0.08
CLN3-208ENST00000561505 CDK16Q00536 496 aa15.56■□□□□ 0.08
CLN3-208ENST00000561505 RNF187Q5TA31 235 aaPredicted RBP15.56■□□□□ 0.08
CLN3-208ENST00000561505 PLAG1Q6DJT9 500 aa15.56■□□□□ 0.08
CLN3-208ENST00000561505 SUSD1Q6UWL2 747 aa15.56■□□□□ 0.08
CLN3-208ENST00000561505 Q6ZPB1 254 aaPredicted RBP15.56■□□□□ 0.08
CLN3-208ENST00000561505 AMER2Q8N7J2 671 aa15.56■□□□□ 0.08
CLN3-208ENST00000561505 ACBD4Q8NC06 268 aa15.56■□□□□ 0.08
CLN3-208ENST00000561505 THAP3Q8WTV1 239 aaPredicted RBP15.56■□□□□ 0.08
CLN3-208ENST00000561505 ZNF480Q8WV37 535 aa15.56■□□□□ 0.08
CLN3-208ENST00000561505 C1orf54Q8WWF1 131 aa15.56■□□□□ 0.08
CLN3-208ENST00000561505 MFSD3Q96ES6 412 aa15.56■□□□□ 0.08
CLN3-208ENST00000561505 MMABQ96EY8 250 aaPredicted RBP15.56■□□□□ 0.08
CLN3-208ENST00000561505 MAGEB10Q96LZ2 347 aaPredicted RBP15.56■□□□□ 0.08
CLN3-208ENST00000561505 PKP4Q99569 1192 aa15.56■□□□□ 0.08
CLN3-208ENST00000561505 ACAT2Q9BWD1 397 aa15.56■□□□□ 0.08
CLN3-208ENST00000561505 TRIM8Q9BZR9 551 aa15.56■□□□□ 0.08
CLN3-208ENST00000561505 STMN3Q9NZ72 180 aa15.56■□□□□ 0.08
CLN3-208ENST00000561505 BFARQ9NZS9 450 aa15.56■□□□□ 0.08
CLN3-208ENST00000561505 SUCOQ9UBS9 1254 aaKnown RBP15.56■□□□□ 0.08
CLN3-208ENST00000561505 SEC14L3Q9UDX4 400 aa15.56■□□□□ 0.08
CLN3-208ENST00000561505 MED16Q9Y2X0 877 aa15.56■□□□□ 0.08
CLN3-208ENST00000561505 F8P00451 2351 aa15.56■□□□□ 0.08
CLN3-208ENST00000561505 PKDREJQ9NTG1 2253 aa15.55■□□□□ 0.08
CLN3-208ENST00000561505 GFYI3L273 518 aa15.55■□□□□ 0.08
CLN3-208ENST00000561505 CCL21O00585 134 aa15.55■□□□□ 0.08
CLN3-208ENST00000561505 CDK2AP1O14519 115 aa15.55■□□□□ 0.08
CLN3-208ENST00000561505 P2RX6O15547 441 aa15.55■□□□□ 0.08
CLN3-208ENST00000561505 ZSCAN5DPP0CG00 497 aa15.55■□□□□ 0.08
CLN3-208ENST00000561505 MYBL2P10244 700 aa15.55■□□□□ 0.08
CLN3-208ENST00000561505 OGNP20774 298 aaKnown RBP15.55■□□□□ 0.08
CLN3-208ENST00000561505 HTR1EP28566 365 aa15.55■□□□□ 0.08
CLN3-208ENST00000561505 FMO4P31512 558 aa15.55■□□□□ 0.08
CLN3-208ENST00000561505 SKIV2L2P42285 1042 aaKnown RBP15.55■□□□□ 0.08
CLN3-208ENST00000561505 PNLIPRP1P54315 467 aa15.55■□□□□ 0.08
CLN3-208ENST00000561505 RIPPLY3P57055 190 aa15.55■□□□□ 0.08
CLN3-208ENST00000561505 SESN2P58004 480 aaPredicted RBP15.55■□□□□ 0.08
CLN3-208ENST00000561505 ADORA2A-AS1P86434 159 aa15.55■□□□□ 0.08
CLN3-208ENST00000561505 KLHL38Q2WGJ6 581 aa15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms