RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 FITM1A5D6W6 292 aa8.96□□□□□ -0.98
LDLR-211ENST00000560173 C21orf140B9A014 251 aa8.96□□□□□ -0.98
LDLR-211ENST00000560173 HAT1O14929 419 aa8.96□□□□□ -0.98
LDLR-211ENST00000560173 ATXN7O15265 892 aaPredicted RBP8.96□□□□□ -0.98
LDLR-211ENST00000560173 RIPK2O43353 540 aa8.96□□□□□ -0.98
LDLR-211ENST00000560173 SRPX2O60687 465 aaPredicted RBP8.96□□□□□ -0.98
LDLR-211ENST00000560173 ALDOAP04075 364 aaKnown RBP8.96□□□□□ -0.98
LDLR-211ENST00000560173 INHBAP08476 426 aa8.96□□□□□ -0.98
LDLR-211ENST00000560173 HBQ1P09105 142 aa8.96□□□□□ -0.98
LDLR-211ENST00000560173 EZRP15311 586 aaKnown RBP8.96□□□□□ -0.98
LDLR-211ENST00000560173 NPPBP16860 134 aa8.96□□□□□ -0.98
LDLR-211ENST00000560173 F8A1P23610 371 aa8.96□□□□□ -0.98
LDLR-211ENST00000560173 DLSTP36957 453 aa8.96□□□□□ -0.98
LDLR-211ENST00000560173 SLC26A3P40879 764 aa8.96□□□□□ -0.98
LDLR-211ENST00000560173 SERPINB8P50452 374 aa8.96□□□□□ -0.98
LDLR-211ENST00000560173 PMS2P54278 862 aa8.96□□□□□ -0.98
LDLR-211ENST00000560173 VSX2P58304 361 aaPredicted RBP8.96□□□□□ -0.98
LDLR-211ENST00000560173 RELAQ04206 551 aa8.96□□□□□ -0.98
LDLR-211ENST00000560173 GABPB1Q06547 395 aaPredicted RBP8.96□□□□□ -0.98
LDLR-211ENST00000560173 CSHL1Q14406 222 aa8.96□□□□□ -0.98
LDLR-211ENST00000560173 OR4D1Q15615 310 aa8.96□□□□□ -0.98
LDLR-211ENST00000560173 TCTE1Q5JU00 501 aa8.96□□□□□ -0.98
LDLR-211ENST00000560173 ZNF385CQ66K41 422 aaPredicted RBP8.96□□□□□ -0.98
LDLR-211ENST00000560173 FRMPD2BQ6IN97 320 aa8.96□□□□□ -0.98
LDLR-211ENST00000560173 CAPN13Q6MZZ7 669 aaPredicted RBP8.96□□□□□ -0.98
LDLR-211ENST00000560173 RHBDD2Q6NTF9 364 aa8.96□□□□□ -0.98
LDLR-211ENST00000560173 FBXO42Q6P3S6 717 aa8.96□□□□□ -0.98
LDLR-211ENST00000560173 TLDC1Q6P9B6 456 aa8.96□□□□□ -0.98
LDLR-211ENST00000560173 FAM198BQ6UWH4 519 aa8.96□□□□□ -0.98
LDLR-211ENST00000560173 LCTLQ6UWM7 567 aa8.96□□□□□ -0.98
LDLR-211ENST00000560173 RAPH1Q70E73 1250 aa8.96□□□□□ -0.98
LDLR-211ENST00000560173 FRA10AC1Q70Z53 315 aa8.96□□□□□ -0.98
LDLR-211ENST00000560173 GPR155Q7Z3F1 870 aa8.96□□□□□ -0.98
LDLR-211ENST00000560173 CCDC91Q7Z6B0 441 aa8.96□□□□□ -0.98
LDLR-211ENST00000560173 KLHDC8AQ8IYD2 350 aa8.96□□□□□ -0.98
LDLR-211ENST00000560173 CENPLQ8N0S6 344 aaPredicted RBP8.96□□□□□ -0.98
LDLR-211ENST00000560173 IQCKQ8N0W5 287 aa8.96□□□□□ -0.98
LDLR-211ENST00000560173 OR4N4Q8N0Y3 316 aa8.96□□□□□ -0.98
LDLR-211ENST00000560173 CNPY4Q8N129 248 aa8.96□□□□□ -0.98
LDLR-211ENST00000560173 ZNF655Q8N720 491 aaPredicted RBP8.96□□□□□ -0.98
LDLR-211ENST00000560173 DCAKDQ8WVC6 231 aa8.96□□□□□ -0.98
LDLR-211ENST00000560173 MR1Q95460 341 aa8.96□□□□□ -0.98
LDLR-211ENST00000560173 ISL2Q96A47 359 aa8.96□□□□□ -0.98
LDLR-211ENST00000560173 KIAA1191Q96A73 305 aa8.96□□□□□ -0.98
LDLR-211ENST00000560173 PYCR2Q96C36 320 aa8.96□□□□□ -0.98
LDLR-211ENST00000560173 SLC45A3Q96JT2 553 aa8.96□□□□□ -0.98
LDLR-211ENST00000560173 OR4K3Q96R72 315 aa8.96□□□□□ -0.98
LDLR-211ENST00000560173 ZFYVE21Q9BQ24 234 aa8.96□□□□□ -0.98
LDLR-211ENST00000560173 HAUS8Q9BT25 410 aa8.96□□□□□ -0.98
LDLR-211ENST00000560173 DHRS4Q9BTZ2 278 aa8.96□□□□□ -0.98
LDLR-211ENST00000560173 EFHD1Q9BUP0 239 aa8.96□□□□□ -0.98
LDLR-211ENST00000560173 STMN4Q9H169 189 aaPredicted RBP8.96□□□□□ -0.98
LDLR-211ENST00000560173 CHST8Q9H2A9 424 aa8.96□□□□□ -0.98
LDLR-211ENST00000560173 SNX15Q9NRS6 342 aa8.96□□□□□ -0.98
LDLR-211ENST00000560173 IGSF5Q9NSI5 407 aa8.96□□□□□ -0.98
LDLR-211ENST00000560173 IRAK4Q9NWZ3 460 aa8.96□□□□□ -0.98
LDLR-211ENST00000560173 ZNF180Q9UJW8 692 aa8.96□□□□□ -0.98
LDLR-211ENST00000560173 SRPK3Q9UPE1 567 aa8.96□□□□□ -0.98
LDLR-211ENST00000560173 PCDHGA6Q9Y5G7 932 aa8.96□□□□□ -0.98
LDLR-211ENST00000560173 PCM1Q15154 2024 aa8.96□□□□□ -0.98
LDLR-211ENST00000560173 ZNF462Q96JM2 2506 aa8.95□□□□□ -0.98
LDLR-211ENST00000560173 A0A087X1B8 175 aa8.95□□□□□ -0.98
LDLR-211ENST00000560173 EXOC1LA0A1B0GW35 172 aa8.95□□□□□ -0.98
LDLR-211ENST00000560173 ZNF891A8MT65 544 aaPredicted RBP8.95□□□□□ -0.98
LDLR-211ENST00000560173 POC1B-GALNT4F8VUJ3 575 aa8.95□□□□□ -0.98
LDLR-211ENST00000560173 H0YGG7 62 aa8.95□□□□□ -0.98
LDLR-211ENST00000560173 H7BY64 318 aa8.95□□□□□ -0.98
LDLR-211ENST00000560173 C2P06681 752 aa8.95□□□□□ -0.98
LDLR-211ENST00000560173 KLK3P07288 261 aaPredicted RBP8.95□□□□□ -0.98
LDLR-211ENST00000560173 CAPN1P07384 714 aa8.95□□□□□ -0.98
LDLR-211ENST00000560173 ANXA5P08758 320 aa8.95□□□□□ -0.98
LDLR-211ENST00000560173 LTA4HP09960 611 aaKnown RBP8.95□□□□□ -0.98
LDLR-211ENST00000560173 CDH1P12830 882 aa8.95□□□□□ -0.98
LDLR-211ENST00000560173 TFEBP19484 476 aa8.95□□□□□ -0.98
LDLR-211ENST00000560173 TCN2P20062 427 aa8.95□□□□□ -0.98
LDLR-211ENST00000560173 HRH2P25021 359 aa8.95□□□□□ -0.98
LDLR-211ENST00000560173 GCAP28676 217 aa8.95□□□□□ -0.98
LDLR-211ENST00000560173 MSH2P43246 934 aa8.95□□□□□ -0.98
LDLR-211ENST00000560173 MAGEA12P43365 314 aa8.95□□□□□ -0.98
LDLR-211ENST00000560173 SLC6A12P48065 614 aa8.95□□□□□ -0.98
LDLR-211ENST00000560173 HNMTP50135 292 aa8.95□□□□□ -0.98
LDLR-211ENST00000560173 SERPINB9P50453 376 aa8.95□□□□□ -0.98
LDLR-211ENST00000560173 ARF3P61204 181 aaPredicted RBP8.95□□□□□ -0.98
LDLR-211ENST00000560173 CSNK1G2P78368 415 aa8.95□□□□□ -0.98
LDLR-211ENST00000560173 IRF9Q00978 393 aa8.95□□□□□ -0.98
LDLR-211ENST00000560173 IFFO1Q0D2I5 559 aa8.95□□□□□ -0.98
LDLR-211ENST00000560173 GRM7Q14831 915 aa8.95□□□□□ -0.98
LDLR-211ENST00000560173 TGFBIQ15582 683 aa8.95□□□□□ -0.98
LDLR-211ENST00000560173 PRTGQ2VWP7 1150 aa8.95□□□□□ -0.98
LDLR-211ENST00000560173 PTCHD3Q3KNS1 767 aa8.95□□□□□ -0.98
LDLR-211ENST00000560173 TAF1BQ53T94 588 aaPredicted RBP8.95□□□□□ -0.98
LDLR-211ENST00000560173 CDKL4Q5MAI5 379 aa8.95□□□□□ -0.98
LDLR-211ENST00000560173 WASHC2DQ5SRD0 308 aa8.95□□□□□ -0.98
LDLR-211ENST00000560173 YOD1Q5VVQ6 348 aaPredicted RBP8.95□□□□□ -0.98
LDLR-211ENST00000560173 LCN10Q6JVE6 187 aa8.95□□□□□ -0.98
LDLR-211ENST00000560173 FAM199XQ6PEV8 388 aaPredicted RBP8.95□□□□□ -0.98
LDLR-211ENST00000560173 TAOK1Q7L7X3 1001 aa8.95□□□□□ -0.98
LDLR-211ENST00000560173 ADCK2Q7Z695 626 aa8.95□□□□□ -0.98
LDLR-211ENST00000560173 TBC1D1Q86TI0 1168 aaPredicted RBP8.95□□□□□ -0.98
LDLR-211ENST00000560173 C17orf64Q86WR6 236 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms