RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 IGSF1Q8N6C5 1336 aa3.35□□□□□ -1.87
VPS13C-208ENST00000559119 LOC100509620A0A075B734 347 aa3.34□□□□□ -1.87
VPS13C-208ENST00000559119 NEMP2A6NFY4 417 aa3.34□□□□□ -1.87
VPS13C-208ENST00000559119 F5H0A9 414 aaPredicted RBP3.34□□□□□ -1.87
VPS13C-208ENST00000559119 MBD4O95243 580 aa3.34□□□□□ -1.87
VPS13C-208ENST00000559119 DANCRP0C864 163 aa3.34□□□□□ -1.87
VPS13C-208ENST00000559119 IRF2P14316 349 aa3.34□□□□□ -1.87
VPS13C-208ENST00000559119 TRIM21P19474 475 aaKnown RBP3.34□□□□□ -1.87
VPS13C-208ENST00000559119 DNASE1P24855 282 aa3.34□□□□□ -1.87
VPS13C-208ENST00000559119 MFSD12Q6NUT3 480 aa3.34□□□□□ -1.87
VPS13C-208ENST00000559119 GUF1Q8N442 669 aaKnown RBP3.34□□□□□ -1.87
VPS13C-208ENST00000559119 OR10Q1Q8NGQ4 319 aa3.34□□□□□ -1.87
VPS13C-208ENST00000559119 CHURC1Q8WUH1 139 aa3.34□□□□□ -1.87
VPS13C-208ENST00000559119 MGME1Q9BQP7 344 aa3.34□□□□□ -1.87
VPS13C-208ENST00000559119 ELF5Q9UKW6 265 aaPredicted RBP3.34□□□□□ -1.87
VPS13C-208ENST00000559119 ABT1Q9ULW3 272 aaKnown RBP3.34□□□□□ -1.87
VPS13C-208ENST00000559119 ARID2Q68CP9 1835 aa3.34□□□□□ -1.87
VPS13C-208ENST00000559119 UMODL1Q5DID0 1318 aa3.34□□□□□ -1.87
VPS13C-208ENST00000559119 GPR75-ASB3A0A0A6YYF3 556 aa3.33□□□□□ -1.88
VPS13C-208ENST00000559119 PRB2P02812 416 aaPredicted RBP3.33□□□□□ -1.88
VPS13C-208ENST00000559119 THY1P04216 161 aa3.33□□□□□ -1.88
VPS13C-208ENST00000559119 MYOGP15173 224 aa3.33□□□□□ -1.88
VPS13C-208ENST00000559119 AADACP22760 399 aa3.33□□□□□ -1.88
VPS13C-208ENST00000559119 VAMP7P51809 220 aa3.33□□□□□ -1.88
VPS13C-208ENST00000559119 MAPK12P53778 367 aa3.33□□□□□ -1.88
VPS13C-208ENST00000559119 CDH13P55290 713 aa3.33□□□□□ -1.88
VPS13C-208ENST00000559119 DCDC1P59894 354 aa3.33□□□□□ -1.88
VPS13C-208ENST00000559119 TRAP1Q12931 704 aaKnown RBP3.33□□□□□ -1.88
VPS13C-208ENST00000559119 GPR33Q49SQ1 333 aa3.33□□□□□ -1.88
VPS13C-208ENST00000559119 OR4A47Q6IF82 309 aa3.33□□□□□ -1.88
VPS13C-208ENST00000559119 CCBE1Q6UXH8 406 aaPredicted RBP3.33□□□□□ -1.88
VPS13C-208ENST00000559119 KBTBD6Q86V97 674 aa3.33□□□□□ -1.88
VPS13C-208ENST00000559119 CSNK1G2-AS1Q8NCQ2 148 aa3.33□□□□□ -1.88
VPS13C-208ENST00000559119 SPPL2AQ8TCT8 520 aa3.33□□□□□ -1.88
VPS13C-208ENST00000559119 AGAP11Q8TF27 550 aa3.33□□□□□ -1.88
VPS13C-208ENST00000559119 METTL21AQ8WXB1 218 aa3.33□□□□□ -1.88
VPS13C-208ENST00000559119 SPACA9Q96E40 222 aaPredicted RBP3.33□□□□□ -1.88
VPS13C-208ENST00000559119 ZNF581Q9P0T4 197 aa3.33□□□□□ -1.88
VPS13C-208ENST00000559119 ABCD2Q9UBJ2 740 aa3.33□□□□□ -1.88
VPS13C-208ENST00000559119 IGHV3-38A0A0C4DH36 116 aa3.32□□□□□ -1.88
VPS13C-208ENST00000559119 SLC1A7O00341 560 aa3.32□□□□□ -1.88
VPS13C-208ENST00000559119 PTP4A3O75365 173 aa3.32□□□□□ -1.88
VPS13C-208ENST00000559119 TOMM70O94826 608 aa3.32□□□□□ -1.88
VPS13C-208ENST00000559119 LY6G6DO95868 133 aa3.32□□□□□ -1.88
VPS13C-208ENST00000559119 MPZP25189 248 aa3.32□□□□□ -1.88
VPS13C-208ENST00000559119 ZNF75DP51815 510 aa3.32□□□□□ -1.88
VPS13C-208ENST00000559119 ERVK-16P61578 105 aa3.32□□□□□ -1.88
VPS13C-208ENST00000559119 HSPB3Q12988 150 aa3.32□□□□□ -1.88
VPS13C-208ENST00000559119 TRA2AQ13595 282 aaKnown RBP eCLIP3.32□□□□□ -1.88
VPS13C-208ENST00000559119 PLEKHS1Q5SXH7 462 aa3.32□□□□□ -1.88
VPS13C-208ENST00000559119 C11orf42Q8N5U0 333 aa3.32□□□□□ -1.88
VPS13C-208ENST00000559119 ZDHHC19Q8WVZ1 309 aaPredicted RBP3.32□□□□□ -1.88
VPS13C-208ENST00000559119 FAM71F1Q96KD3 344 aaPredicted RBP3.32□□□□□ -1.88
VPS13C-208ENST00000559119 IL17BQ9UHF5 180 aa3.32□□□□□ -1.88
VPS13C-208ENST00000559119 WDR83OSQ9Y284 106 aa3.32□□□□□ -1.88
VPS13C-208ENST00000559119 PTRH2Q9Y3E5 179 aaKnown RBP3.32□□□□□ -1.88
VPS13C-208ENST00000559119 ADAMDEC1O15204 470 aa3.31□□□□□ -1.88
VPS13C-208ENST00000559119 TLX2O43763 284 aaPredicted RBP3.31□□□□□ -1.88
VPS13C-208ENST00000559119 NRIP1P48552 1158 aa3.31□□□□□ -1.88
VPS13C-208ENST00000559119 NDST2P52849 883 aa3.31□□□□□ -1.88
VPS13C-208ENST00000559119 NDUFV3P56181 108 aaKnown RBP3.31□□□□□ -1.88
VPS13C-208ENST00000559119 RUNX3Q13761 415 aa3.31□□□□□ -1.88
VPS13C-208ENST00000559119 VEZF1Q14119 521 aa3.31□□□□□ -1.88
VPS13C-208ENST00000559119 KIAA0141Q14154 515 aaPredicted RBP3.31□□□□□ -1.88
VPS13C-208ENST00000559119 C15orf59Q2T9L4 293 aaPredicted RBP3.31□□□□□ -1.88
VPS13C-208ENST00000559119 ATAD3CQ5T2N8 411 aa3.31□□□□□ -1.88
VPS13C-208ENST00000559119 AGAP7PQ5VUJ5 663 aa3.31□□□□□ -1.88
VPS13C-208ENST00000559119 DMKNQ6E0U4 476 aaPredicted RBP3.31□□□□□ -1.88
VPS13C-208ENST00000559119 FAAH2Q6GMR7 532 aa3.31□□□□□ -1.88
VPS13C-208ENST00000559119 ZNF595Q8IYB9 648 aa3.31□□□□□ -1.88
VPS13C-208ENST00000559119 C4orf32Q8N8J7 132 aa3.31□□□□□ -1.88
VPS13C-208ENST00000559119 NOA1Q8NC60 698 aaKnown RBP3.31□□□□□ -1.88
VPS13C-208ENST00000559119 PIK3R3Q92569 461 aa3.31□□□□□ -1.88
VPS13C-208ENST00000559119 HDAC2Q92769 488 aaKnown RBP3.31□□□□□ -1.88
VPS13C-208ENST00000559119 RBM24Q9BX46 236 aaKnown RBP3.31□□□□□ -1.88
VPS13C-208ENST00000559119 PRRG4Q9BZD6 226 aa3.31□□□□□ -1.88
VPS13C-208ENST00000559119 SYNCQ9H7C4 482 aa3.31□□□□□ -1.88
VPS13C-208ENST00000559119 MYH14Q7Z406 1995 aaKnown RBP3.31□□□□□ -1.88
VPS13C-208ENST00000559119 FANCIQ9NVI1 1328 aa3.3□□□□□ -1.88
VPS13C-208ENST00000559119 LOC102723996A0A087X1L8 192 aa3.3□□□□□ -1.88
VPS13C-208ENST00000559119 IQCMA0A1B0GVH7 501 aa3.3□□□□□ -1.88
VPS13C-208ENST00000559119 SRRM4A7MD48 611 aaKnown RBP3.3□□□□□ -1.88
VPS13C-208ENST00000559119 DCAF7P61962 342 aa3.3□□□□□ -1.88
VPS13C-208ENST00000559119 SRSF9Q13242 221 aaKnown RBP eCLIP3.3□□□□□ -1.88
VPS13C-208ENST00000559119 CCDC30Q5VVM6 783 aa3.3□□□□□ -1.88
VPS13C-208ENST00000559119 SLC24A5Q71RS6 500 aa3.3□□□□□ -1.88
VPS13C-208ENST00000559119 GPC2Q8N158 579 aa3.3□□□□□ -1.88
VPS13C-208ENST00000559119 PSMD1Q99460 953 aa3.3□□□□□ -1.88
VPS13C-208ENST00000559119 YTHDF1Q9BYJ9 559 aaKnown RBP3.3□□□□□ -1.88
VPS13C-208ENST00000559119 Q9H8V8 135 aa3.3□□□□□ -1.88
VPS13C-208ENST00000559119 MYNNQ9NPC7 610 aa3.3□□□□□ -1.88
VPS13C-208ENST00000559119 SLC35C2Q9NQQ7 365 aa3.3□□□□□ -1.88
VPS13C-208ENST00000559119 NAALAD2Q9Y3Q0 740 aa3.3□□□□□ -1.88
VPS13C-208ENST00000559119 ARID4BQ4LE39 1312 aaPredicted RBP3.29□□□□□ -1.88
VPS13C-208ENST00000559119 IGHV3-20A0A0C4DH32 117 aa3.29□□□□□ -1.88
VPS13C-208ENST00000559119 A0A1W2PQ09 198 aa3.29□□□□□ -1.88
VPS13C-208ENST00000559119 FAM220BPB1ANY3 271 aa3.29□□□□□ -1.88
VPS13C-208ENST00000559119 E9PAM4 449 aa3.29□□□□□ -1.88
VPS13C-208ENST00000559119 PDHXO00330 501 aa3.29□□□□□ -1.88
VPS13C-208ENST00000559119 EIF5BO60841 1220 aaKnown RBP3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms