RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 RBM41Q96IZ5 413 aaKnown RBP1.5□□□□□ -2.17
USP3-209ENST00000558925 ZNF354BQ96LW1 612 aa1.5□□□□□ -2.17
USP3-209ENST00000558925 CCDC43Q96MW1 224 aaKnown RBP1.5□□□□□ -2.17
USP3-209ENST00000558925 GDAP1L1Q96MZ0 367 aa1.5□□□□□ -2.17
USP3-209ENST00000558925 RHNO1Q9BSD3 238 aa1.5□□□□□ -2.17
USP3-209ENST00000558925 TMEM204Q9BSN7 226 aa1.5□□□□□ -2.17
USP3-209ENST00000558925 TRMT61BQ9BVS5 477 aaKnown RBP1.5□□□□□ -2.17
USP3-209ENST00000558925 CDK19Q9BWU1 502 aa1.5□□□□□ -2.17
USP3-209ENST00000558925 TM6SF1Q9BZW5 370 aa1.5□□□□□ -2.17
USP3-209ENST00000558925 HIPK2Q9H2X6 1198 aa1.5□□□□□ -2.17
USP3-209ENST00000558925 RIMS4Q9H426 269 aaPredicted RBP1.5□□□□□ -2.17
USP3-209ENST00000558925 THAP9Q9H5L6 903 aa1.5□□□□□ -2.17
USP3-209ENST00000558925 DDX31Q9H8H2 851 aaKnown RBP1.5□□□□□ -2.17
USP3-209ENST00000558925 EVA1AQ9H8M9 152 aa1.5□□□□□ -2.17
USP3-209ENST00000558925 UPF2Q9HAU5 1272 aaKnown RBP1.5□□□□□ -2.17
USP3-209ENST00000558925 RNPEPL1Q9HAU8 725 aa1.5□□□□□ -2.17
USP3-209ENST00000558925 GSN-AS1Q9NRJ2 163 aa1.5□□□□□ -2.17
USP3-209ENST00000558925 SLCO1C1Q9NYB5 712 aa1.5□□□□□ -2.17
USP3-209ENST00000558925 OR6C2Q9NZP2 312 aa1.5□□□□□ -2.17
USP3-209ENST00000558925 ZKSCAN7Q9P0L1 754 aaPredicted RBP1.5□□□□□ -2.17
USP3-209ENST00000558925 ZDHHC2Q9UIJ5 367 aa1.5□□□□□ -2.17
USP3-209ENST00000558925 FBXW2Q9UKT8 454 aa1.5□□□□□ -2.17
USP3-209ENST00000558925 SLC7A7Q9UM01 511 aa1.5□□□□□ -2.17
USP3-209ENST00000558925 STX8Q9UNK0 236 aa1.5□□□□□ -2.17
USP3-209ENST00000558925 TNNQ9UQP3 1299 aa1.5□□□□□ -2.17
USP3-209ENST00000558925 RUVBL2Q9Y230 463 aaKnown RBP1.5□□□□□ -2.17
USP3-209ENST00000558925 KNSTRNQ9Y448 316 aa1.5□□□□□ -2.17
USP3-209ENST00000558925 PCDHGB1Q9Y5G3 927 aa1.5□□□□□ -2.17
USP3-209ENST00000558925 TEX264Q9Y6I9 313 aa1.5□□□□□ -2.17
USP3-209ENST00000558925 R4GN57 208 aa1.5□□□□□ -2.17
USP3-209ENST00000558925 IGLV9-49A0A0B4J1Y8 123 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 GLTPD2A6NH11 291 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 ANKDD1BA6NHY2 528 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 C2orf81A6NN90 581 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 SNURFLB1AK76 121 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 C19orf81C9J6K1 198 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 E5RGE8 158 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 C16orf97H3BN30 126 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 PGRMC2O15173 223 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 MLNRO43193 412 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 ZBTB14O43829 449 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 PRKNO60260 465 aaPredicted RBP1.49□□□□□ -2.17
USP3-209ENST00000558925 CIDEAO60543 219 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 ATP9AO75110 1047 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 RTN2O75298 545 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 PRKRAO75569 313 aaKnown RBP1.49□□□□□ -2.17
USP3-209ENST00000558925 MOCS2O96007 188 aaPredicted RBP1.49□□□□□ -2.17
USP3-209ENST00000558925 CALCAP01258 141 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 SLC4A1P02730 911 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 FRMD6-AS1P0C7T7 363 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 C8orf89P0DMQ9 161 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 MYL6BP14649 208 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 ZNF23P17027 643 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 HLA-DPA1P20036 260 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 CYP2A7P20853 494 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 MT3P25713 68 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 SRD5A2P31213 254 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 DCTP40126 519 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 CD86P42081 329 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 RPL21P46778 160 aaKnown RBP1.49□□□□□ -2.17
USP3-209ENST00000558925 NPBWR1P48145 328 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 KHKP50053 298 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 SERPINH1P50454 418 aaKnown RBP1.49□□□□□ -2.17
USP3-209ENST00000558925 UCP2P55851 309 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 KIAA1024LP59773 190 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 STX1BP61266 288 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 FKBP1BP68106 108 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 PITX1P78337 314 aaPredicted RBP1.49□□□□□ -2.17
USP3-209ENST00000558925 AKAP17AQ02040 695 aaKnown RBP1.49□□□□□ -2.17
USP3-209ENST00000558925 GFPT1Q06210 699 aaPredicted RBP1.49□□□□□ -2.17
USP3-209ENST00000558925 ILF3Q12906 894 aaKnown RBP eCLIP1.49□□□□□ -2.17
USP3-209ENST00000558925 TRAP1Q12931 704 aaKnown RBP1.49□□□□□ -2.17
USP3-209ENST00000558925 NPRL3Q12980 569 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 KEAP1Q14145 624 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 RPS6KA1Q15418 735 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 EXT1Q16394 746 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 PHKG1Q16816 387 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 TWISTNBQ3B726 338 aaPredicted RBP1.49□□□□□ -2.17
USP3-209ENST00000558925 AARDQ4LEZ3 155 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 PARP10Q53GL7 1025 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 ASPRV1Q53RT3 343 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 ZNF542PQ5EBM4 170 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 TECRLQ5HYJ1 363 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 WDR38Q5JTN6 314 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 LCE1FQ5T754 118 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 ZNF324BQ6AW86 544 aaPredicted RBP1.49□□□□□ -2.17
USP3-209ENST00000558925 TATDN1Q6P1N9 297 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 CTR9Q6PD62 1173 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 ISLR2Q6UXK2 745 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 FOXL2NBQ6ZUU3 175 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 C9orf139Q6ZV77 190 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 C1orf186Q6ZWK4 172 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 MARK2Q7KZI7 788 aaKnown RBP1.49□□□□□ -2.17
USP3-209ENST00000558925 ASPGQ86U10 573 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 ISCA2Q86U28 154 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 AMIGO1Q86WK6 493 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 NUDT13Q86X67 352 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 MEX3DQ86XN8 651 aaKnown RBP1.49□□□□□ -2.17
USP3-209ENST00000558925 NAGSQ8N159 534 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 ZNF619Q8N2I2 560 aa1.49□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms