RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 FPR1P21462 350 aa11□□□□□ -0.65
LDLR-208ENST00000558518 PIK3CBP42338 1070 aa11□□□□□ -0.65
LDLR-208ENST00000558518 INPP1P49441 399 aa11□□□□□ -0.65
LDLR-208ENST00000558518 RHOAP61586 193 aa11□□□□□ -0.65
LDLR-208ENST00000558518 IRAK1BP1Q5VVH5 260 aa11□□□□□ -0.65
LDLR-208ENST00000558518 AGAP6Q5VW22 663 aa11□□□□□ -0.65
LDLR-208ENST00000558518 PRSS48Q7RTY5 328 aa11□□□□□ -0.65
LDLR-208ENST00000558518 OTULINQ96BN8 352 aa11□□□□□ -0.65
LDLR-208ENST00000558518 TXNDC15Q96J42 360 aa11□□□□□ -0.65
LDLR-208ENST00000558518 RDH12Q96NR8 316 aa11□□□□□ -0.65
LDLR-208ENST00000558518 AGAP4Q96P64 663 aa11□□□□□ -0.65
LDLR-208ENST00000558518 YME1L1Q96TA2 773 aa11□□□□□ -0.65
LDLR-208ENST00000558518 CCNB1IP1Q9NPC3 277 aa11□□□□□ -0.65
LDLR-208ENST00000558518 THG1LQ9NWX6 298 aaKnown RBP11□□□□□ -0.65
LDLR-208ENST00000558518 CD84Q9UIB8 345 aa11□□□□□ -0.65
LDLR-208ENST00000558518 TLR6Q9Y2C9 796 aa11□□□□□ -0.65
LDLR-208ENST00000558518 TNPO3Q9Y5L0 923 aaKnown RBP11□□□□□ -0.65
LDLR-208ENST00000558518 SYNDIG1LA6NDD5 238 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 ANKRD66B4E2M5 251 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 K7ERQ8 282 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 AREL1O15033 823 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 SUV39H1O43463 412 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 STK16O75716 305 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 KDELR2P33947 212 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 CSTF3Q12996 717 aaKnown RBP10.99□□□□□ -0.65
LDLR-208ENST00000558518 DUSP4Q13115 394 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 IL18R1Q13478 541 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 DSC3Q14574 896 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 PYDC2Q56P42 97 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 ZNF544Q6NX49 715 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 EIF3MQ7L2H7 374 aaKnown RBP10.99□□□□□ -0.65
LDLR-208ENST00000558518 PJA1Q8NG27 643 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 OR4K1Q8NGD4 311 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 SUN5Q8TC36 379 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 GGHQ92820 318 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 MYDGFQ969H8 173 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 ASIC4Q96FT7 647 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 ACPTQ9BZG2 426 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 TMEM248Q9NWD8 314 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 DNAJC27Q9NZQ0 273 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 ACSL6Q9UKU0 697 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 GABRQQ9UN88 632 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 SLC22A14Q9Y267 594 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP10.99□□□□□ -0.65
LDLR-208ENST00000558518 TRIM64BA6NI03 449 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 FZD9O00144 591 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 HAT1O14929 419 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 CHRNB1P11230 501 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 CXCR2P25025 360 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 TGFBR2P37173 567 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 HTR2BP41595 481 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 PRIM2P49643 509 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 ATN1P54259 1190 aaPredicted RBP10.99□□□□□ -0.65
LDLR-208ENST00000558518 CAV3P56539 151 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 CDC42EP1Q00587 391 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 ZNF177Q13360 481 aaPredicted RBP10.99□□□□□ -0.65
LDLR-208ENST00000558518 ZNF181Q2M3W8 571 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 PTCHD3Q3KNS1 767 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 PTCHD4Q6ZW05 846 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 LAX1Q8IWV1 398 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 ELMOD1Q8N336 334 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 CEP295NLQ96MC4 621 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 SLC30A2Q9BRI3 323 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 ABCB8Q9NUT2 735 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 NUDT4Q9NZJ9 180 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 OSGIN1Q9UJX0 560 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 PADI3Q9ULW8 664 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 SSC5DA1L4H1 1573 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 ARNTLO00327 626 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 ANKRD28O15084 1053 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 PRAMEF11O60813 436 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 WISP3O95389 354 aaPredicted RBP10.99□□□□□ -0.65
LDLR-208ENST00000558518 HOXB8P17481 243 aaPredicted RBP10.99□□□□□ -0.65
LDLR-208ENST00000558518 HOXA9P31269 272 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 RPIAP49247 311 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 ZNF140P52738 457 aaPredicted RBP10.99□□□□□ -0.65
LDLR-208ENST00000558518 EEF1AKMT2Q5JPI9 291 aaKnown RBP10.99□□□□□ -0.65
LDLR-208ENST00000558518 DGKKQ5KSL6 1271 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 PDZK1Q5T2W1 519 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 TMPRSS11AQ6ZMR5 421 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 RFPL4BQ6ZWI9 263 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 ZNF551Q7Z340 670 aaPredicted RBP10.99□□□□□ -0.65
LDLR-208ENST00000558518 NLGN2Q8NFZ4 835 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 OR10G2Q8NGC3 310 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 OR9Q1Q8NGQ5 310 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 ADGRE3Q9BY15 652 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 MOV10Q9HCE1 1003 aaKnown RBP10.99□□□□□ -0.65
LDLR-208ENST00000558518 CSNK1G1Q9HCP0 422 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 TMEM184CQ9NVA4 438 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 MUTYHQ9UIF7 546 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 KCNH4Q9UQ05 1017 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 MAP4K5Q9Y4K4 846 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 PIKFYVEQ9Y2I7 2098 aa10.99□□□□□ -0.65
LDLR-208ENST00000558518 CCDC182A6NF36 153 aa10.98□□□□□ -0.65
LDLR-208ENST00000558518 MAGEB17A8MXT2 336 aa10.98□□□□□ -0.65
LDLR-208ENST00000558518 RFXAPO00287 272 aa10.98□□□□□ -0.65
LDLR-208ENST00000558518 SLC28A1O00337 649 aa10.98□□□□□ -0.65
LDLR-208ENST00000558518 SLC16A6O15403 523 aa10.98□□□□□ -0.65
LDLR-208ENST00000558518 TAPBPO15533 448 aa10.98□□□□□ -0.65
LDLR-208ENST00000558518 LRRTM2O43300 516 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms