RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 MAP1BP46821 2468 aaKnown RBP13.74□□□□□ -0.21
USP3-205ENST00000557884 EPG5Q9HCE0 2579 aa13.74□□□□□ -0.21
USP3-205ENST00000557884 FEZF1A0PJY2 475 aa13.73□□□□□ -0.21
USP3-205ENST00000557884 IQCJ-SCHIP1C9J366 451 aaPredicted RBP13.73□□□□□ -0.21
USP3-205ENST00000557884 ZSCAN9O15535 394 aaPredicted RBP13.73□□□□□ -0.21
USP3-205ENST00000557884 ZNF749O43361 778 aa13.73□□□□□ -0.21
USP3-205ENST00000557884 CPNE3O75131 537 aaKnown RBP13.73□□□□□ -0.21
USP3-205ENST00000557884 CDH16O75309 829 aa13.73□□□□□ -0.21
USP3-205ENST00000557884 COL6A2P12110 1019 aa13.73□□□□□ -0.21
USP3-205ENST00000557884 MTHFD2P13995 350 aa13.73□□□□□ -0.21
USP3-205ENST00000557884 ITPKBP27987 946 aa13.73□□□□□ -0.21
USP3-205ENST00000557884 CCR8P51685 355 aa13.73□□□□□ -0.21
USP3-205ENST00000557884 CSNK1G2P78368 415 aa13.73□□□□□ -0.21
USP3-205ENST00000557884 MEF2AQ02078 507 aaPredicted RBP13.73□□□□□ -0.21
USP3-205ENST00000557884 PFKFB4Q16877 469 aa13.73□□□□□ -0.21
USP3-205ENST00000557884 TSNAXIP1Q2TAA8 658 aa13.73□□□□□ -0.21
USP3-205ENST00000557884 CDKL4Q5MAI5 379 aa13.73□□□□□ -0.21
USP3-205ENST00000557884 CATSPEREQ5SY80 951 aa13.73□□□□□ -0.21
USP3-205ENST00000557884 C16orf46Q6P387 395 aa13.73□□□□□ -0.21
USP3-205ENST00000557884 C6orf15Q6UXA7 325 aaPredicted RBP13.73□□□□□ -0.21
USP3-205ENST00000557884 LRRC69Q6ZNQ3 347 aa13.73□□□□□ -0.21
USP3-205ENST00000557884 TMPRSS11BQ86T26 416 aa13.73□□□□□ -0.21
USP3-205ENST00000557884 DTX1Q86Y01 620 aa13.73□□□□□ -0.21
USP3-205ENST00000557884 SPACA3Q8IXA5 215 aa13.73□□□□□ -0.21
USP3-205ENST00000557884 CACNA2D3Q8IZS8 1091 aa13.73□□□□□ -0.21
USP3-205ENST00000557884 NLGN4XQ8N0W4 816 aa13.73□□□□□ -0.21
USP3-205ENST00000557884 SLC38A9Q8NBW4 561 aa13.73□□□□□ -0.21
USP3-205ENST00000557884 NLGN4YQ8NFZ3 816 aaPredicted RBP13.73□□□□□ -0.21
USP3-205ENST00000557884 SLC5A11Q8WWX8 675 aa13.73□□□□□ -0.21
USP3-205ENST00000557884 NKD1Q969G9 470 aa13.73□□□□□ -0.21
USP3-205ENST00000557884 NEIL2Q969S2 332 aa13.73□□□□□ -0.21
USP3-205ENST00000557884 CNOT10Q9H9A5 744 aaKnown RBP13.73□□□□□ -0.21
USP3-205ENST00000557884 ACTR5Q9H9F9 607 aaPredicted RBP13.73□□□□□ -0.21
USP3-205ENST00000557884 TMEM184CQ9NVA4 438 aa13.73□□□□□ -0.21
USP3-205ENST00000557884 DNAJC11Q9NVH1 559 aa13.73□□□□□ -0.21
USP3-205ENST00000557884 PTBP2Q9UKA9 531 aaKnown RBP13.73□□□□□ -0.21
USP3-205ENST00000557884 USP24Q9UPU5 2620 aa13.73□□□□□ -0.21
USP3-205ENST00000557884 ACACAQ13085 2346 aa13.72□□□□□ -0.21
USP3-205ENST00000557884 LRRC14BA6NHZ5 514 aa13.72□□□□□ -0.21
USP3-205ENST00000557884 SRRM3A6NNA2 597 aaPredicted RBP13.72□□□□□ -0.21
USP3-205ENST00000557884 H0YGG7 62 aa13.72□□□□□ -0.21
USP3-205ENST00000557884 H3BMH7 237 aa13.72□□□□□ -0.21
USP3-205ENST00000557884 TK2O00142 265 aa13.72□□□□□ -0.21
USP3-205ENST00000557884 MAP2K7O14733 419 aa13.72□□□□□ -0.21
USP3-205ENST00000557884 CCNT2O60583 730 aaKnown RBP13.72□□□□□ -0.21
USP3-205ENST00000557884 STK16O75716 305 aa13.72□□□□□ -0.21
USP3-205ENST00000557884 IPO13O94829 963 aaKnown RBP13.72□□□□□ -0.21
USP3-205ENST00000557884 RBP1P09455 135 aa13.72□□□□□ -0.21
USP3-205ENST00000557884 EZRP15311 586 aaKnown RBP13.72□□□□□ -0.21
USP3-205ENST00000557884 VARSP26640 1264 aaKnown RBP13.72□□□□□ -0.21
USP3-205ENST00000557884 GGT5P36269 586 aa13.72□□□□□ -0.21
USP3-205ENST00000557884 ATP1A2P50993 1020 aa13.72□□□□□ -0.21
USP3-205ENST00000557884 ARF3P61204 181 aaPredicted RBP13.72□□□□□ -0.21
USP3-205ENST00000557884 CDC16Q13042 620 aa13.72□□□□□ -0.21
USP3-205ENST00000557884 GPS2Q13227 327 aa13.72□□□□□ -0.21
USP3-205ENST00000557884 WASHC2DQ5SRD0 308 aa13.72□□□□□ -0.21
USP3-205ENST00000557884 C1orf189Q5VU69 101 aa13.72□□□□□ -0.21
USP3-205ENST00000557884 NXPE4Q6UWF7 544 aa13.72□□□□□ -0.21
USP3-205ENST00000557884 KLHDC8AQ8IYD2 350 aa13.72□□□□□ -0.21
USP3-205ENST00000557884 IL22RA1Q8N6P7 574 aa13.72□□□□□ -0.21
USP3-205ENST00000557884 ACMSDQ8TDX5 336 aa13.72□□□□□ -0.21
USP3-205ENST00000557884 CLIP3Q96DZ5 547 aa13.72□□□□□ -0.21
USP3-205ENST00000557884 AKIRIN1Q9H9L7 192 aaPredicted RBP13.72□□□□□ -0.21
USP3-205ENST00000557884 PCDHB3Q9Y5E6 796 aa13.72□□□□□ -0.21
USP3-205ENST00000557884 KCNE2Q9Y6J6 123 aa13.72□□□□□ -0.21
USP3-205ENST00000557884 AHCTF1Q8WYP5 2266 aa13.72□□□□□ -0.21
USP3-205ENST00000557884 ADAMTS20P59510 1910 aa13.72□□□□□ -0.21
USP3-205ENST00000557884 CCDC189A1A4V9 331 aa13.71□□□□□ -0.21
USP3-205ENST00000557884 HRH2P25021 359 aa13.71□□□□□ -0.21
USP3-205ENST00000557884 BCL6P41182 706 aa13.71□□□□□ -0.21
USP3-205ENST00000557884 TLE3Q04726 772 aa13.71□□□□□ -0.21
USP3-205ENST00000557884 RASA2Q15283 850 aa13.71□□□□□ -0.21
USP3-205ENST00000557884 TCTE1Q5JU00 501 aa13.71□□□□□ -0.21
USP3-205ENST00000557884 MANEAQ5SRI9 462 aa13.71□□□□□ -0.21
USP3-205ENST00000557884 TLDC1Q6P9B6 456 aa13.71□□□□□ -0.21
USP3-205ENST00000557884 ESX1Q8N693 406 aa13.71□□□□□ -0.21
USP3-205ENST00000557884 CSNK1A1LQ8N752 337 aa13.71□□□□□ -0.21
USP3-205ENST00000557884 PTGR2Q8N8N7 351 aaPredicted RBP13.71□□□□□ -0.21
USP3-205ENST00000557884 TTC29Q8NA56 475 aaPredicted RBP13.71□□□□□ -0.21
USP3-205ENST00000557884 ZNF740Q8NDX6 193 aa13.71□□□□□ -0.21
USP3-205ENST00000557884 ABHD11Q8NFV4 315 aa13.71□□□□□ -0.21
USP3-205ENST00000557884 UBTD2Q8WUN7 234 aa13.71□□□□□ -0.21
USP3-205ENST00000557884 MR1Q95460 341 aa13.71□□□□□ -0.21
USP3-205ENST00000557884 RERGQ96A58 199 aaPredicted RBP13.71□□□□□ -0.21
USP3-205ENST00000557884 PHF21BQ96EK2 531 aa13.71□□□□□ -0.21
USP3-205ENST00000557884 ZNF285Q96NJ3 590 aa13.71□□□□□ -0.21
USP3-205ENST00000557884 OR2A5Q96R48 311 aa13.71□□□□□ -0.21
USP3-205ENST00000557884 MRPL57Q9BQC6 102 aaKnown RBP13.71□□□□□ -0.21
USP3-205ENST00000557884 DPH1Q9BZG8 443 aa13.71□□□□□ -0.21
USP3-205ENST00000557884 CD244Q9BZW8 370 aa13.71□□□□□ -0.21
USP3-205ENST00000557884 SPNS1Q9H2V7 528 aa13.71□□□□□ -0.21
USP3-205ENST00000557884 MRPL46Q9H2W6 279 aaKnown RBP13.71□□□□□ -0.21
USP3-205ENST00000557884 TMEM216Q9P0N5 145 aa13.71□□□□□ -0.21
USP3-205ENST00000557884 DHCR7Q9UBM7 475 aaKnown RBP13.71□□□□□ -0.21
USP3-205ENST00000557884 NDOR1Q9UHB4 597 aa13.71□□□□□ -0.21
USP3-205ENST00000557884 AP1M2Q9Y6Q5 423 aa13.71□□□□□ -0.21
USP3-205ENST00000557884 A0A087WV48 116 aa13.7□□□□□ -0.22
USP3-205ENST00000557884 LOC101059948A0A1B0GTJ6 334 aa13.7□□□□□ -0.22
USP3-205ENST00000557884 P2RX6O15547 441 aa13.7□□□□□ -0.22
USP3-205ENST00000557884 OR1F1O43749 312 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms