RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 RETREG3Q86VR2 466 aa12.24□□□□□ -0.45
SHMT2-229ENST00000557348 HORMAD1Q86X24 394 aa12.24□□□□□ -0.45
SHMT2-229ENST00000557348 ZNF547Q8IVP9 402 aa12.24□□□□□ -0.45
SHMT2-229ENST00000557348 SYTL1Q8IYJ3 562 aa12.24□□□□□ -0.45
SHMT2-229ENST00000557348 SCAIQ8N9R8 606 aa12.24□□□□□ -0.45
SHMT2-229ENST00000557348 IL17RCQ8NAC3 791 aa12.24□□□□□ -0.45
SHMT2-229ENST00000557348 TRUB1Q8WWH5 349 aaKnown RBP12.24□□□□□ -0.45
SHMT2-229ENST00000557348 POP5Q969H6 163 aaKnown RBP12.24□□□□□ -0.45
SHMT2-229ENST00000557348 ZUFSPQ96AP4 578 aa12.24□□□□□ -0.45
SHMT2-229ENST00000557348 PYCR2Q96C36 320 aa12.24□□□□□ -0.45
SHMT2-229ENST00000557348 WDR34Q96EX3 536 aa12.24□□□□□ -0.45
SHMT2-229ENST00000557348 MED8Q96G25 268 aa12.24□□□□□ -0.45
SHMT2-229ENST00000557348 SH3GL1Q99961 368 aa12.24□□□□□ -0.45
SHMT2-229ENST00000557348 SGPP1Q9BX95 441 aa12.24□□□□□ -0.45
SHMT2-229ENST00000557348 ACPTQ9BZG2 426 aa12.24□□□□□ -0.45
SHMT2-229ENST00000557348 ATG10Q9H0Y0 220 aa12.24□□□□□ -0.45
SHMT2-229ENST00000557348 OR52A5Q9H2C5 316 aa12.24□□□□□ -0.45
SHMT2-229ENST00000557348 CCDC177Q9NQR7 707 aaPredicted RBP12.24□□□□□ -0.45
SHMT2-229ENST00000557348 SPATA7Q9P0W8 599 aa12.24□□□□□ -0.45
SHMT2-229ENST00000557348 MAP10Q9P2G4 905 aa12.24□□□□□ -0.45
SHMT2-229ENST00000557348 GULP1Q9UBP9 304 aa12.24□□□□□ -0.45
SHMT2-229ENST00000557348 TSC22D4Q9Y3Q8 395 aa12.24□□□□□ -0.45
SHMT2-229ENST00000557348 BPTFQ12830 3046 aa12.23□□□□□ -0.45
SHMT2-229ENST00000557348 KDM1AO60341 852 aa12.23□□□□□ -0.45
SHMT2-229ENST00000557348 DNAJB5O75953 348 aa12.23□□□□□ -0.45
SHMT2-229ENST00000557348 KLF8O95600 359 aaPredicted RBP12.23□□□□□ -0.45
SHMT2-229ENST00000557348 ACADMP11310 421 aa12.23□□□□□ -0.45
SHMT2-229ENST00000557348 BMP2P12643 396 aa12.23□□□□□ -0.45
SHMT2-229ENST00000557348 DCKP27707 260 aa12.23□□□□□ -0.45
SHMT2-229ENST00000557348 HNRNPFP52597 415 aaKnown RBP12.23□□□□□ -0.45
SHMT2-229ENST00000557348 NME5P56597 212 aa12.23□□□□□ -0.45
SHMT2-229ENST00000557348 TUBA3CQ13748 450 aa12.23□□□□□ -0.45
SHMT2-229ENST00000557348 IRF4Q15306 451 aa12.23□□□□□ -0.45
SHMT2-229ENST00000557348 SGO1Q5FBB7 561 aa12.23□□□□□ -0.45
SHMT2-229ENST00000557348 HID1Q8IV36 788 aa12.23□□□□□ -0.45
SHMT2-229ENST00000557348 TP53I13Q8NBR0 393 aaPredicted RBP12.23□□□□□ -0.45
SHMT2-229ENST00000557348 PLA2G15Q8NCC3 412 aa12.23□□□□□ -0.45
SHMT2-229ENST00000557348 BHLHE22Q8NFJ8 381 aaPredicted RBP12.23□□□□□ -0.45
SHMT2-229ENST00000557348 OR14C36Q8NHC7 312 aa12.23□□□□□ -0.45
SHMT2-229ENST00000557348 GIPC3Q8TF64 312 aa12.23□□□□□ -0.45
SHMT2-229ENST00000557348 FCRL1Q96LA6 429 aa12.23□□□□□ -0.45
SHMT2-229ENST00000557348 CGREF1Q99674 301 aa12.23□□□□□ -0.45
SHMT2-229ENST00000557348 RAB11FIP5Q9BXF6 653 aa12.23□□□□□ -0.45
SHMT2-229ENST00000557348 SLC17A9Q9BYT1 436 aa12.23□□□□□ -0.45
SHMT2-229ENST00000557348 RMND5AQ9H871 391 aa12.23□□□□□ -0.45
SHMT2-229ENST00000557348 INTS7Q9NVH2 962 aaKnown RBP12.23□□□□□ -0.45
SHMT2-229ENST00000557348 ARMC1Q9NVT9 282 aa12.23□□□□□ -0.45
SHMT2-229ENST00000557348 ADGRE2Q9UHX3 823 aa12.23□□□□□ -0.45
SHMT2-229ENST00000557348 AQP12BA6NM10 295 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 FXYD1O00168 92 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 CACNB4O00305 520 aaPredicted RBP12.22□□□□□ -0.45
SHMT2-229ENST00000557348 NOL3O60936 208 aaKnown RBP12.22□□□□□ -0.45
SHMT2-229ENST00000557348 KCNH1O95259 989 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 SLC35G4P0C7Q5 338 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 CD1EP15812 388 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 SLC6A2P23975 617 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 SERPINB1P30740 379 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 ZFP36L2P47974 494 aaKnown RBP12.22□□□□□ -0.45
SHMT2-229ENST00000557348 ADPRHP54922 357 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 CLDN8P56748 225 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 TBPL1P62380 186 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 CTBSQ01459 385 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 HMGCS1Q01581 520 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 SMAD4Q13485 552 aaKnown RBP12.22□□□□□ -0.45
SHMT2-229ENST00000557348 PWP1Q13610 501 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 INPP5AQ14642 412 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 PON2Q15165 354 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 NDUFA5Q16718 116 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 ZXDCQ2QGD7 858 aaPredicted RBP12.22□□□□□ -0.45
SHMT2-229ENST00000557348 TIGD2Q4W5G0 525 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 USP39Q53GS9 565 aaKnown RBP12.22□□□□□ -0.45
SHMT2-229ENST00000557348 C2orf27AQ580R0 203 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 METRNLQ641Q3 311 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 ATG9BQ674R7 924 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 MED27Q6P2C8 311 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 LCTLQ6UWM7 567 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 DHFR2Q86XF0 187 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 AQP12AQ8IXF9 295 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 LIX1Q8N485 282 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 LILRA3Q8N6C8 439 aaPredicted RBP12.22□□□□□ -0.45
SHMT2-229ENST00000557348 OR8J3Q8NGG0 315 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 ZNF480Q8WV37 535 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 SLC13A3Q8WWT9 602 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 TESCQ96BS2 214 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 THAP11Q96EK4 314 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 SIPA1Q96FS4 1042 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 PITHD1Q9GZP4 211 aaPredicted RBP12.22□□□□□ -0.45
SHMT2-229ENST00000557348 MKRN2Q9H000 416 aaKnown RBP12.22□□□□□ -0.45
SHMT2-229ENST00000557348 CLMPQ9H6B4 373 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 COPS7BQ9H9Q2 264 aaPredicted RBP12.22□□□□□ -0.45
SHMT2-229ENST00000557348 VPS29Q9UBQ0 182 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 RUVBL1Q9Y265 456 aaKnown RBP12.22□□□□□ -0.45
SHMT2-229ENST00000557348 ASF1AQ9Y294 204 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 A0A1W2PQU0 124 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 TCRBV3S1A0A5B6 114 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 TMEM247A6NEH6 219 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 PRORSD1PA6NEY8 169 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 FOXE1O00358 373 aaPredicted RBP12.22□□□□□ -0.45
SHMT2-229ENST00000557348 RNGTTO60942 597 aaKnown RBP12.22□□□□□ -0.45
SHMT2-229ENST00000557348 EGFP01133 1207 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms