RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 PRDX5P30044 214 aa13.43□□□□□ -0.26
SHMT2-226ENST00000556825 HIBADHP31937 336 aaKnown RBP13.43□□□□□ -0.26
SHMT2-226ENST00000556825 EIF6P56537 245 aaKnown RBP13.43□□□□□ -0.26
SHMT2-226ENST00000556825 PTPN11Q06124 597 aaPredicted RBP13.43□□□□□ -0.26
SHMT2-226ENST00000556825 PON3Q15166 354 aa13.43□□□□□ -0.26
SHMT2-226ENST00000556825 IL31Q6EBC2 164 aa13.43□□□□□ -0.26
SHMT2-226ENST00000556825 HHIPL2Q6UWX4 724 aa13.43□□□□□ -0.26
SHMT2-226ENST00000556825 PGBD3Q8N328 593 aa13.43□□□□□ -0.26
SHMT2-226ENST00000556825 OR5K1Q8NHB7 308 aa13.43□□□□□ -0.26
SHMT2-226ENST00000556825 PRMT8Q9NR22 394 aaPredicted RBP13.43□□□□□ -0.26
SHMT2-226ENST00000556825 HCN3Q9P1Z3 774 aa13.43□□□□□ -0.26
SHMT2-226ENST00000556825 CLEC4AQ9UMR7 237 aa13.43□□□□□ -0.26
SHMT2-226ENST00000556825 FIS1Q9Y3D6 152 aa13.43□□□□□ -0.26
SHMT2-226ENST00000556825 CMAHPQ9Y471 501 aa13.43□□□□□ -0.26
SHMT2-226ENST00000556825 OAS3Q9Y6K5 1087 aaKnown RBP13.43□□□□□ -0.26
SHMT2-226ENST00000556825 TNRC6CQ9HCJ0 1690 aaKnown RBP13.42□□□□□ -0.26
SHMT2-226ENST00000556825 FAM240BA0A1B0GVZ2 78 aa13.42□□□□□ -0.26
SHMT2-226ENST00000556825 AGRPO00253 132 aa13.42□□□□□ -0.26
SHMT2-226ENST00000556825 PRMT3O60678 531 aa13.42□□□□□ -0.26
SHMT2-226ENST00000556825 CST1P01037 141 aa13.42□□□□□ -0.26
SHMT2-226ENST00000556825 COX5BP10606 129 aa13.42□□□□□ -0.26
SHMT2-226ENST00000556825 PRG2P13727 222 aa13.42□□□□□ -0.26
SHMT2-226ENST00000556825 SPI1P17947 270 aa13.42□□□□□ -0.26
SHMT2-226ENST00000556825 TGM4P49221 684 aa13.42□□□□□ -0.26
SHMT2-226ENST00000556825 RGS6P49758 472 aa13.42□□□□□ -0.26
SHMT2-226ENST00000556825 GRM3Q14832 879 aa13.42□□□□□ -0.26
SHMT2-226ENST00000556825 MAD2L1BPQ15013 274 aaPredicted RBP13.42□□□□□ -0.26
SHMT2-226ENST00000556825 SSX2Q16385 188 aa13.42□□□□□ -0.26
SHMT2-226ENST00000556825 PFKFB4Q16877 469 aa13.42□□□□□ -0.26
SHMT2-226ENST00000556825 TMEM44Q2T9K0 475 aa13.42□□□□□ -0.26
SHMT2-226ENST00000556825 ELP2Q6IA86 826 aa13.42□□□□□ -0.26
SHMT2-226ENST00000556825 FAM109BQ6ICB4 259 aaPredicted RBP13.42□□□□□ -0.26
SHMT2-226ENST00000556825 DENND1BQ6P3S1 775 aa13.42□□□□□ -0.26
SHMT2-226ENST00000556825 BLOC1S3Q6QNY0 202 aa13.42□□□□□ -0.26
SHMT2-226ENST00000556825 SHFQ7M4L6 423 aa13.42□□□□□ -0.26
SHMT2-226ENST00000556825 SLC44A2Q8IWA5 706 aaPredicted RBP13.42□□□□□ -0.26
SHMT2-226ENST00000556825 PQLC3Q8N755 202 aa13.42□□□□□ -0.26
SHMT2-226ENST00000556825 DYNLL2Q96FJ2 89 aa13.42□□□□□ -0.26
SHMT2-226ENST00000556825 LRRC46Q96FV0 321 aa13.42□□□□□ -0.26
SHMT2-226ENST00000556825 CXorf58Q96LI9 332 aa13.42□□□□□ -0.26
SHMT2-226ENST00000556825 SLC29A3Q9BZD2 475 aa13.42□□□□□ -0.26
SHMT2-226ENST00000556825 NLKQ9UBE8 527 aa13.42□□□□□ -0.26
SHMT2-226ENST00000556825 MORF4L1Q9UBU8 362 aa13.42□□□□□ -0.26
SHMT2-226ENST00000556825 SEC14L4Q9UDX3 406 aa13.42□□□□□ -0.26
SHMT2-226ENST00000556825 MAGEL2Q9UJ55 1249 aa13.42□□□□□ -0.26
SHMT2-226ENST00000556825 FBXL2Q9UKC9 423 aa13.42□□□□□ -0.26
SHMT2-226ENST00000556825 SLC6A5Q9Y345 797 aa13.42□□□□□ -0.26
SHMT2-226ENST00000556825 AP1M2Q9Y6Q5 423 aa13.42□□□□□ -0.26
SHMT2-226ENST00000556825 KIAA1551Q9HCM1 1747 aa13.42□□□□□ -0.26
SHMT2-226ENST00000556825 CDC7O00311 574 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 SULT1C2O00338 296 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 PPP6CO00743 305 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 GNGT2O14610 69 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 SLC31A2O15432 143 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 ATG12O94817 140 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 ADH1CP00326 375 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 ERVK-10P10266 1014 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 KCNJ3P48549 501 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 GPR143P51810 404 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 TAS2R60P59551 318 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 RAC1P63000 192 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 DEFA6Q01524 100 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 DSC2Q02487 901 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 SOX4Q06945 474 aaPredicted RBP13.41□□□□□ -0.26
SHMT2-226ENST00000556825 ELP6Q0PNE2 266 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 KLHL26Q53HC5 615 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 EFCAB12Q6NXP0 572 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 MOXD1Q6UVY6 613 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 LARP4Q71RC2 724 aaKnown RBP eCLIP13.41□□□□□ -0.267e-8■■□□□ 12.3
SHMT2-226ENST00000556825 ASPGQ86U10 573 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 TMEM132CQ8N3T6 1108 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 ARFGAP1Q8N6T3 406 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 ZNF655Q8N720 491 aaPredicted RBP13.41□□□□□ -0.26
SHMT2-226ENST00000556825 CAMKVQ8NCB2 501 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 DMBX1Q8NFW5 382 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 DNAJB14Q8TBM8 379 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 GRAPLQ8TC17 118 aaPredicted RBP13.41□□□□□ -0.26
SHMT2-226ENST00000556825 NKX6-2Q9C056 277 aaPredicted RBP13.41□□□□□ -0.26
SHMT2-226ENST00000556825 QRSL1Q9H0R6 528 aaKnown RBP13.41□□□□□ -0.26
SHMT2-226ENST00000556825 MED28Q9H204 178 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 NSMCE4AQ9NXX6 385 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 FZD1Q9UP38 647 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 SAMHD1Q9Y3Z3 626 aaKnown RBP13.41□□□□□ -0.26
SHMT2-226ENST00000556825 PCDHA1Q9Y5I3 950 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 TCRBV16S1A1N1A0A5B0 115 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 BCLAF3A2AJT9 711 aaKnown RBP13.41□□□□□ -0.26
SHMT2-226ENST00000556825 TARM1B6A8C7 271 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 INMT-MINDY4F8WBC2 141 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 M0R233 179 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 FZD9O00144 591 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 CA12O43570 354 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 METTL18O95568 372 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 POMCP01189 267 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 USP17L8P0C7I0 530 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 OR56A5P0C7T3 313 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 PRKAR1AP10644 381 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 TPH1P17752 444 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 PRKACGP22612 351 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 FPR3P25089 353 aa13.41□□□□□ -0.26
SHMT2-226ENST00000556825 HMGB2P26583 209 aaKnown RBP13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms