RNA–Protein interactions for RNA: ENST00000555351.1

VRK1-204, Transcript of vaccinia related kinase 1, humanhuman

TSL 2

Gene VRK1, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-204ENST00000555351 YBX1P67809 324 aaKnown RBP11.28□□□□□ -0.6
VRK1-204ENST00000555351 MGAT5Q09328 741 aa11.28□□□□□ -0.6
VRK1-204ENST00000555351 PDAP1Q13442 181 aaKnown RBP11.28□□□□□ -0.6
VRK1-204ENST00000555351 NDUFA9Q16795 377 aa11.28□□□□□ -0.6
VRK1-204ENST00000555351 THEMIS2Q5TEJ8 643 aa11.28□□□□□ -0.6
VRK1-204ENST00000555351 PRAMEF13Q5VWM6 474 aa11.28□□□□□ -0.6
VRK1-204ENST00000555351 JMJD6Q6NYC1 403 aaPredicted RBP11.28□□□□□ -0.6
VRK1-204ENST00000555351 AGTRAPQ6RW13 159 aa11.28□□□□□ -0.6
VRK1-204ENST00000555351 LCTLQ6UWM7 567 aa11.28□□□□□ -0.6
VRK1-204ENST00000555351 CLEC18BQ6UXF7 455 aa11.28□□□□□ -0.6
VRK1-204ENST00000555351 MAATS1Q7Z4T9 603 aa11.28□□□□□ -0.6
VRK1-204ENST00000555351 SLC26A11Q86WA9 606 aa11.28□□□□□ -0.6
VRK1-204ENST00000555351 CLEC18CQ8NCF0 446 aa11.28□□□□□ -0.6
VRK1-204ENST00000555351 GALNT11Q8NCW6 608 aa11.28□□□□□ -0.6
VRK1-204ENST00000555351 STT3BQ8TCJ2 826 aa11.28□□□□□ -0.6
VRK1-204ENST00000555351 ATL1Q8WXF7 558 aa11.28□□□□□ -0.6
VRK1-204ENST00000555351 MIEF2Q96C03 454 aa11.28□□□□□ -0.6
VRK1-204ENST00000555351 CABS1Q96KC9 395 aa11.28□□□□□ -0.6
VRK1-204ENST00000555351 HIST1H2AHQ96KK5 128 aa11.28□□□□□ -0.6
VRK1-204ENST00000555351 NDNQ99608 321 aa11.28□□□□□ -0.6
VRK1-204ENST00000555351 HIST1H2AJQ99878 128 aa11.28□□□□□ -0.6
VRK1-204ENST00000555351 H2AFJQ9BTM1 129 aa11.28□□□□□ -0.6
VRK1-204ENST00000555351 SARGQ9BW04 601 aa11.28□□□□□ -0.6
VRK1-204ENST00000555351 SGPP1Q9BX95 441 aa11.28□□□□□ -0.6
VRK1-204ENST00000555351 TRIM54Q9BYV2 358 aa11.28□□□□□ -0.6
VRK1-204ENST00000555351 MKKSQ9NPJ1 570 aaPredicted RBP11.28□□□□□ -0.6
VRK1-204ENST00000555351 PPANQ9NQ55 473 aaKnown RBP11.28□□□□□ -0.6
VRK1-204ENST00000555351 MOCS1Q9NZB8 636 aa11.28□□□□□ -0.6
VRK1-204ENST00000555351 CTSFQ9UBX1 484 aa11.28□□□□□ -0.6
VRK1-204ENST00000555351 CDC23Q9UJX2 597 aa11.28□□□□□ -0.6
VRK1-204ENST00000555351 PYCARDQ9ULZ3 195 aa11.28□□□□□ -0.6
VRK1-204ENST00000555351 CHMP2BQ9UQN3 213 aa11.28□□□□□ -0.6
VRK1-204ENST00000555351 RUVBL1Q9Y265 456 aaKnown RBP11.28□□□□□ -0.6
VRK1-204ENST00000555351 HS3ST3B1Q9Y662 390 aa11.28□□□□□ -0.6
VRK1-204ENST00000555351 MED13Q9UHV7 2174 aa11.28□□□□□ -0.6
VRK1-204ENST00000555351 ANKRD12Q6UB98 2062 aa11.28□□□□□ -0.6
VRK1-204ENST00000555351 PABPN1LA6NDY0 278 aaKnown RBP11.27□□□□□ -0.61
VRK1-204ENST00000555351 FAM187AA6NFU0 413 aa11.27□□□□□ -0.61
VRK1-204ENST00000555351 TTLL8A6PVC2 850 aa11.27□□□□□ -0.61
VRK1-204ENST00000555351 PYCARD-AS1I3L0S3 204 aa11.27□□□□□ -0.61
VRK1-204ENST00000555351 EIF3HO15372 352 aaKnown RBP eCLIP11.27□□□□□ -0.61
VRK1-204ENST00000555351 NRP2O60462 931 aa11.27□□□□□ -0.61
VRK1-204ENST00000555351 BANF1O75531 89 aa11.27□□□□□ -0.61
VRK1-204ENST00000555351 MED26O95402 600 aa11.27□□□□□ -0.61
VRK1-204ENST00000555351 EIF2S1P05198 315 aaKnown RBP11.27□□□□□ -0.61
VRK1-204ENST00000555351 ZGLP1P0C6A0 271 aa11.27□□□□□ -0.61
VRK1-204ENST00000555351 FBLP22087 321 aaKnown RBP11.27□□□□□ -0.61
VRK1-204ENST00000555351 TBPL1P62380 186 aa11.27□□□□□ -0.61
VRK1-204ENST00000555351 TSTA3Q13630 321 aaPredicted RBP11.27□□□□□ -0.61
VRK1-204ENST00000555351 RBBP7Q16576 425 aa11.27□□□□□ -0.61
VRK1-204ENST00000555351 TUBB8Q3ZCM7 444 aa11.27□□□□□ -0.61
VRK1-204ENST00000555351 RBM20Q5T481 1227 aaKnown RBP11.27□□□□□ -0.61
VRK1-204ENST00000555351 HECTD2Q5U5R9 776 aa11.27□□□□□ -0.61
VRK1-204ENST00000555351 DUPD1Q68J44 220 aa11.27□□□□□ -0.61
VRK1-204ENST00000555351 KIRREL2Q6UWL6 708 aa11.27□□□□□ -0.61
VRK1-204ENST00000555351 IGFL2Q6UWQ7 119 aa11.27□□□□□ -0.61
VRK1-204ENST00000555351 CYS1Q717R9 158 aa11.27□□□□□ -0.61
VRK1-204ENST00000555351 C17orf64Q86WR6 236 aa11.27□□□□□ -0.61
VRK1-204ENST00000555351 EFCAB3Q8N7B9 438 aa11.27□□□□□ -0.61
VRK1-204ENST00000555351 PPFIBP2Q8ND30 876 aa11.27□□□□□ -0.61
VRK1-204ENST00000555351 ZDHHC19Q8WVZ1 309 aaPredicted RBP11.27□□□□□ -0.61
VRK1-204ENST00000555351 COL26A1Q96A83 441 aa11.27□□□□□ -0.61
VRK1-204ENST00000555351 LINGO1Q96FE5 620 aa11.27□□□□□ -0.61
VRK1-204ENST00000555351 WDR83Q9BRX9 315 aaKnown RBP11.27□□□□□ -0.61
VRK1-204ENST00000555351 TRIM51Q9BSJ1 452 aa11.27□□□□□ -0.61
VRK1-204ENST00000555351 HAUS8Q9BT25 410 aa11.27□□□□□ -0.61
VRK1-204ENST00000555351 CRB3Q9BUF7 120 aa11.27□□□□□ -0.61
VRK1-204ENST00000555351 PHACTR1Q9C0D0 580 aa11.27□□□□□ -0.61
VRK1-204ENST00000555351 DRC3Q9H069 523 aa11.27□□□□□ -0.61
VRK1-204ENST00000555351 ZNF552Q9H707 407 aaPredicted RBP11.27□□□□□ -0.61
VRK1-204ENST00000555351 POPDC3Q9HBV1 291 aa11.27□□□□□ -0.61
VRK1-204ENST00000555351 WHRNQ9P202 907 aa11.27□□□□□ -0.61
VRK1-204ENST00000555351 ZFATQ9P243 1243 aa11.27□□□□□ -0.61
VRK1-204ENST00000555351 FBXL4Q9UKA2 621 aa11.27□□□□□ -0.61
VRK1-204ENST00000555351 ADAMTS6Q9UKP5 1117 aa11.27□□□□□ -0.61
VRK1-204ENST00000555351 NOVA2Q9UNW9 492 aaKnown RBP11.27□□□□□ -0.61
VRK1-204ENST00000555351 MAP4K5Q9Y4K4 846 aa11.27□□□□□ -0.61
VRK1-204ENST00000555351 TNRC6AQ8NDV7 1962 aaKnown RBP11.27□□□□□ -0.61
VRK1-204ENST00000555351 HEATR5BQ9P2D3 2071 aa11.26□□□□□ -0.61
VRK1-204ENST00000555351 A6NL46 340 aa11.26□□□□□ -0.61
VRK1-204ENST00000555351 H0YIG0 161 aa11.26□□□□□ -0.61
VRK1-204ENST00000555351 H7BY64 318 aa11.26□□□□□ -0.61
VRK1-204ENST00000555351 HAT1O14929 419 aa11.26□□□□□ -0.61
VRK1-204ENST00000555351 FANCGO15287 622 aa11.26□□□□□ -0.61
VRK1-204ENST00000555351 ZIC2O95409 532 aaPredicted RBP11.26□□□□□ -0.61
VRK1-204ENST00000555351 HPP00738 406 aa11.26□□□□□ -0.61
VRK1-204ENST00000555351 F7P08709 466 aaPredicted RBP11.26□□□□□ -0.61
VRK1-204ENST00000555351 ANXA5P08758 320 aa11.26□□□□□ -0.61
VRK1-204ENST00000555351 KLC1Q07866 573 aa11.26□□□□□ -0.61
VRK1-204ENST00000555351 PDIA2Q13087 525 aaKnown RBP11.26□□□□□ -0.61
VRK1-204ENST00000555351 CALCOCO2Q13137 446 aa11.26□□□□□ -0.61
VRK1-204ENST00000555351 IGFBP7Q16270 282 aa11.26□□□□□ -0.61
VRK1-204ENST00000555351 NADK2Q4G0N4 442 aa11.26□□□□□ -0.61
VRK1-204ENST00000555351 IRAK1BP1Q5VVH5 260 aa11.26□□□□□ -0.61
VRK1-204ENST00000555351 ATG9BQ674R7 924 aa11.26□□□□□ -0.61
VRK1-204ENST00000555351 SLC6A19Q695T7 634 aa11.26□□□□□ -0.61
VRK1-204ENST00000555351 CAPN13Q6MZZ7 669 aaPredicted RBP11.26□□□□□ -0.61
VRK1-204ENST00000555351 TRMT10BQ6PF06 316 aaKnown RBP11.26□□□□□ -0.61
VRK1-204ENST00000555351 ADCK2Q7Z695 626 aa11.26□□□□□ -0.61
VRK1-204ENST00000555351 STRA8Q7Z7C7 330 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms