RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 MED4Q9NPJ6 270 aa11.75□□□□□ -0.53
SHMT2-209ENST00000553949 SEMA4BQ9NPR2 832 aaPredicted RBP11.75□□□□□ -0.53
SHMT2-209ENST00000553949 LOXL2Q9Y4K0 774 aa11.75□□□□□ -0.53
SHMT2-209ENST00000553949 CNOT1A5YKK6 2376 aaKnown RBP11.75□□□□□ -0.53
SHMT2-209ENST00000553949 COL27A1Q8IZC6 1860 aaPredicted RBP11.74□□□□□ -0.53
SHMT2-209ENST00000553949 UNC13CQ8NB66 2214 aa11.74□□□□□ -0.53
SHMT2-209ENST00000553949 CCDC187A0A096LP49 1063 aa11.74□□□□□ -0.53
SHMT2-209ENST00000553949 WDR91A4D1P6 747 aa11.74□□□□□ -0.53
SHMT2-209ENST00000553949 EFCAB7A8K855 629 aa11.74□□□□□ -0.53
SHMT2-209ENST00000553949 OR7A17O14581 309 aa11.74□□□□□ -0.53
SHMT2-209ENST00000553949 HAT1O14929 419 aa11.74□□□□□ -0.53
SHMT2-209ENST00000553949 HYAL3O43820 417 aaPredicted RBP11.74□□□□□ -0.53
SHMT2-209ENST00000553949 PRAMEF4O60810 478 aa11.74□□□□□ -0.53
SHMT2-209ENST00000553949 CTSVO60911 334 aa11.74□□□□□ -0.53
SHMT2-209ENST00000553949 H2AFYO75367 372 aaKnown RBP11.74□□□□□ -0.53
SHMT2-209ENST00000553949 C1GALT1C1LP0DN25 315 aa11.74□□□□□ -0.53
SHMT2-209ENST00000553949 EZRP15311 586 aaKnown RBP11.74□□□□□ -0.53
SHMT2-209ENST00000553949 FOLR1P15328 257 aa11.74□□□□□ -0.53
SHMT2-209ENST00000553949 TSPAN8P19075 237 aa11.74□□□□□ -0.53
SHMT2-209ENST00000553949 NAA20P61599 178 aa11.74□□□□□ -0.53
SHMT2-209ENST00000553949 PPP2R2AP63151 447 aa11.74□□□□□ -0.53
SHMT2-209ENST00000553949 SH3BP2P78314 561 aa11.74□□□□□ -0.53
SHMT2-209ENST00000553949 MEF2AQ02078 507 aaPredicted RBP11.74□□□□□ -0.53
SHMT2-209ENST00000553949 IRF8Q02556 426 aa11.74□□□□□ -0.53
SHMT2-209ENST00000553949 RELAQ04206 551 aa11.74□□□□□ -0.53
SHMT2-209ENST00000553949 CLCQ05315 142 aa11.74□□□□□ -0.53
SHMT2-209ENST00000553949 PCDH1Q08174 1060 aa11.74□□□□□ -0.53
SHMT2-209ENST00000553949 FOXC1Q12948 553 aa11.74□□□□□ -0.53
SHMT2-209ENST00000553949 CHIT1Q13231 466 aa11.74□□□□□ -0.53
SHMT2-209ENST00000553949 DOC2AQ14183 400 aa11.74□□□□□ -0.53
SHMT2-209ENST00000553949 TBCCQ15814 346 aa11.74□□□□□ -0.53
SHMT2-209ENST00000553949 RBBP7Q16576 425 aa11.74□□□□□ -0.53
SHMT2-209ENST00000553949 XKR6Q5GH73 641 aa11.74□□□□□ -0.53
SHMT2-209ENST00000553949 CFAP157Q5JU67 520 aa11.74□□□□□ -0.53
SHMT2-209ENST00000553949 PRAMEF9Q5VWM5 478 aa11.74□□□□□ -0.53
SHMT2-209ENST00000553949 FBXO42Q6P3S6 717 aa11.74□□□□□ -0.53
SHMT2-209ENST00000553949 RNF44Q7L0R7 432 aa11.74□□□□□ -0.53
SHMT2-209ENST00000553949 RAB11FIP2Q7L804 512 aa11.74□□□□□ -0.53
SHMT2-209ENST00000553949 FAM129CQ86XR2 697 aa11.74□□□□□ -0.53
SHMT2-209ENST00000553949 NUDCD3Q8IVD9 361 aa11.74□□□□□ -0.53
SHMT2-209ENST00000553949 DNAJC22Q8N4W6 341 aa11.74□□□□□ -0.53
SHMT2-209ENST00000553949 MDM1Q8TC05 714 aa11.74□□□□□ -0.53
SHMT2-209ENST00000553949 TRPC4APQ8TEL6 797 aa11.74□□□□□ -0.53
SHMT2-209ENST00000553949 SREK1Q8WXA9 508 aaKnown RBP11.74□□□□□ -0.53
SHMT2-209ENST00000553949 ATP6V1E2Q96A05 226 aa11.74□□□□□ -0.53
SHMT2-209ENST00000553949 WDR34Q96EX3 536 aa11.74□□□□□ -0.53
SHMT2-209ENST00000553949 PAIP2Q9BPZ3 127 aaKnown RBP11.74□□□□□ -0.53
SHMT2-209ENST00000553949 AIF1LQ9BQI0 150 aa11.74□□□□□ -0.53
SHMT2-209ENST00000553949 GATA5Q9BWX5 397 aaPredicted RBP11.74□□□□□ -0.53
SHMT2-209ENST00000553949 SPNS1Q9H2V7 528 aa11.74□□□□□ -0.53
SHMT2-209ENST00000553949 GSTO2Q9H4Y5 243 aa11.74□□□□□ -0.53
SHMT2-209ENST00000553949 ACTR8Q9H981 624 aa11.74□□□□□ -0.53
SHMT2-209ENST00000553949 GEMIN8Q9NWZ8 242 aaKnown RBP11.74□□□□□ -0.53
SHMT2-209ENST00000553949 OCIAD1Q9NX40 245 aa11.74□□□□□ -0.53
SHMT2-209ENST00000553949 SIDT1Q9NXL6 827 aaKnown RBP11.74□□□□□ -0.53
SHMT2-209ENST00000553949 PILRAQ9UKJ1 303 aa11.74□□□□□ -0.53
SHMT2-209ENST00000553949 A0A0J9YVX5 310 aa11.73□□□□□ -0.53
SHMT2-209ENST00000553949 A0A1W2PNU3 283 aaPredicted RBP11.73□□□□□ -0.53
SHMT2-209ENST00000553949 B4E171 279 aa11.73□□□□□ -0.53
SHMT2-209ENST00000553949 H3BQF6 201 aa11.73□□□□□ -0.53
SHMT2-209ENST00000553949 PPP6CO00743 305 aa11.73□□□□□ -0.53
SHMT2-209ENST00000553949 HCRTR1O43613 425 aa11.73□□□□□ -0.53
SHMT2-209ENST00000553949 UGDHO60701 494 aa11.73□□□□□ -0.53
SHMT2-209ENST00000553949 WFS1O76024 890 aa11.73□□□□□ -0.53
SHMT2-209ENST00000553949 MLYCDO95822 493 aa11.73□□□□□ -0.53
SHMT2-209ENST00000553949 OTCP00480 354 aa11.73□□□□□ -0.53
SHMT2-209ENST00000553949 MSL3P1P0C860 447 aa11.73□□□□□ -0.53
SHMT2-209ENST00000553949 FGF3P11487 239 aaPredicted RBP11.73□□□□□ -0.53
SHMT2-209ENST00000553949 CCL4P13236 92 aa11.73□□□□□ -0.53
SHMT2-209ENST00000553949 HGFP14210 728 aa11.73□□□□□ -0.53
SHMT2-209ENST00000553949 CXCR2P25025 360 aa11.73□□□□□ -0.53
SHMT2-209ENST00000553949 GRK3P35626 688 aa11.73□□□□□ -0.53
SHMT2-209ENST00000553949 TSPAN7P41732 249 aa11.73□□□□□ -0.53
SHMT2-209ENST00000553949 CASP2P42575 452 aa11.73□□□□□ -0.53
SHMT2-209ENST00000553949 GABRA4P48169 554 aa11.73□□□□□ -0.53
SHMT2-209ENST00000553949 CCNG1P51959 295 aa11.73□□□□□ -0.53
SHMT2-209ENST00000553949 REEP5Q00765 189 aa11.73□□□□□ -0.53
SHMT2-209ENST00000553949 ACY1Q03154 408 aa11.73□□□□□ -0.53
SHMT2-209ENST00000553949 CYP4F3Q08477 520 aa11.73□□□□□ -0.53
SHMT2-209ENST00000553949 LCP2Q13094 533 aa11.73□□□□□ -0.53
SHMT2-209ENST00000553949 E2F2Q14209 437 aa11.73□□□□□ -0.53
SHMT2-209ENST00000553949 SLBPQ14493 270 aaKnown RBP eCLIP11.73□□□□□ -0.53
SHMT2-209ENST00000553949 GPR19Q15760 415 aa11.73□□□□□ -0.53
SHMT2-209ENST00000553949 DEFB110Q30KQ9 67 aa11.73□□□□□ -0.53
SHMT2-209ENST00000553949 ZC3H12BQ5HYM0 836 aaKnown RBP11.73□□□□□ -0.53
SHMT2-209ENST00000553949 PAGE2BQ5JRK9 111 aa11.73□□□□□ -0.53
SHMT2-209ENST00000553949 FRMD7Q6ZUT3 714 aa11.73□□□□□ -0.53
SHMT2-209ENST00000553949 PLD3Q8IV08 490 aa11.73□□□□□ -0.53
SHMT2-209ENST00000553949 MCATQ8IVS2 390 aaKnown RBP11.73□□□□□ -0.53
SHMT2-209ENST00000553949 BMPERQ8N8U9 685 aa11.73□□□□□ -0.53
SHMT2-209ENST00000553949 OR52B6Q8NGF0 335 aa11.73□□□□□ -0.53
SHMT2-209ENST00000553949 WDR36Q8NI36 951 aaKnown RBP11.73□□□□□ -0.53
SHMT2-209ENST00000553949 PTCD3Q96EY7 689 aaKnown RBP11.73□□□□□ -0.53
SHMT2-209ENST00000553949 FCRL4Q96PJ5 515 aa11.73□□□□□ -0.53
SHMT2-209ENST00000553949 CDK15Q96Q40 435 aa11.73□□□□□ -0.53
SHMT2-209ENST00000553949 OR6C1Q96RD1 312 aa11.73□□□□□ -0.53
SHMT2-209ENST00000553949 ZFYVE21Q9BQ24 234 aa11.73□□□□□ -0.53
SHMT2-209ENST00000553949 EFCAB11Q9BUY7 163 aa11.73□□□□□ -0.53
SHMT2-209ENST00000553949 PLCL2Q9UPR0 1127 aa11.73□□□□□ -0.53
SHMT2-209ENST00000553949 SATB2Q9UPW6 733 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms