RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 SELPLGQ14242 412 aa25.41■■□□□ 1.66
CCDC88C-205ENST00000553403 RUNDC3AQ59EK9 446 aa25.41■■□□□ 1.66
CCDC88C-205ENST00000553403 TBC1D3GQ6DHY5 549 aa25.41■■□□□ 1.66
CCDC88C-205ENST00000553403 TBC1D3CQ6IPX1 549 aa25.41■■□□□ 1.66
CCDC88C-205ENST00000553403 TBC1D21Q8IYX1 336 aa25.41■■□□□ 1.66
CCDC88C-205ENST00000553403 TBC1D3Q8IZP1 549 aaPredicted RBP25.41■■□□□ 1.66
CCDC88C-205ENST00000553403 APOOQ9BUR5 198 aa25.41■■□□□ 1.66
CCDC88C-205ENST00000553403 PAIP1Q9H074 479 aaKnown RBP25.41■■□□□ 1.66
CCDC88C-205ENST00000553403 SIRT5Q9NXA8 310 aa25.41■■□□□ 1.66
CCDC88C-205ENST00000553403 NIPSNAP3AQ9UFN0 247 aaPredicted RBP25.41■■□□□ 1.66
CCDC88C-205ENST00000553403 MAGEL2Q9UJ55 1249 aa25.41■■□□□ 1.66
CCDC88C-205ENST00000553403 TDRKHQ9Y2W6 561 aaKnown RBP25.41■■□□□ 1.66
CCDC88C-205ENST00000553403 TRBV5-3A0A0A0MS03 114 aa25.4■■□□□ 1.66
CCDC88C-205ENST00000553403 CEACAM5P06731 702 aa25.4■■□□□ 1.66
CCDC88C-205ENST00000553403 UMPSP11172 480 aa25.4■■□□□ 1.66
CCDC88C-205ENST00000553403 AQP4P55087 323 aa25.4■■□□□ 1.66
CCDC88C-205ENST00000553403 MTPNP58546 118 aa25.4■■□□□ 1.66
CCDC88C-205ENST00000553403 MSRB3Q8IXL7 192 aa25.4■■□□□ 1.66
CCDC88C-205ENST00000553403 SLC44A3Q8N4M1 653 aa25.4■■□□□ 1.66
CCDC88C-205ENST00000553403 ICA1LQ8NDH6 482 aa25.4■■□□□ 1.66
CCDC88C-205ENST00000553403 IL17FQ96PD4 163 aa25.4■■□□□ 1.66
CCDC88C-205ENST00000553403 EBPLQ9BY08 206 aa25.4■■□□□ 1.66
CCDC88C-205ENST00000553403 TCRBV5S2A0A599 114 aa25.39■■□□□ 1.66
CCDC88C-205ENST00000553403 PIPSLA2A3N6 862 aa25.39■■□□□ 1.66
CCDC88C-205ENST00000553403 HNRNPRO43390 633 aaKnown RBP25.39■■□□□ 1.66
CCDC88C-205ENST00000553403 FUCA1P04066 466 aa25.39■■□□□ 1.66
CCDC88C-205ENST00000553403 HOXC4P09017 264 aaPredicted RBP25.39■■□□□ 1.66
CCDC88C-205ENST00000553403 IL10P22301 178 aa25.39■■□□□ 1.66
CCDC88C-205ENST00000553403 PSMA4P25789 261 aaKnown RBP25.39■■□□□ 1.66
CCDC88C-205ENST00000553403 ASMTP46597 345 aa25.39■■□□□ 1.66
CCDC88C-205ENST00000553403 CLCNKAP51800 687 aa25.39■■□□□ 1.66
CCDC88C-205ENST00000553403 RPS13P62277 151 aaKnown RBP25.39■■□□□ 1.66
CCDC88C-205ENST00000553403 PLIN5Q00G26 463 aa25.39■■□□□ 1.66
CCDC88C-205ENST00000553403 CYP4F3Q08477 520 aa25.39■■□□□ 1.66
CCDC88C-205ENST00000553403 EOGTQ5NDL2 527 aa25.39■■□□□ 1.66
CCDC88C-205ENST00000553403 THEMIS2Q5TEJ8 643 aa25.39■■□□□ 1.66
CCDC88C-205ENST00000553403 ANO7Q6IWH7 933 aa25.39■■□□□ 1.66
CCDC88C-205ENST00000553403 GPR180Q86V85 440 aa25.39■■□□□ 1.66
CCDC88C-205ENST00000553403 TNIP2Q8NFZ5 429 aa25.39■■□□□ 1.66
CCDC88C-205ENST00000553403 LRTOMTQ8WZ04 291 aa25.39■■□□□ 1.66
CCDC88C-205ENST00000553403 EGLN2Q96KS0 407 aa25.39■■□□□ 1.66
CCDC88C-205ENST00000553403 PCBD2Q9H0N5 130 aa25.39■■□□□ 1.66
CCDC88C-205ENST00000553403 SERHLQ9NQF3 203 aa25.39■■□□□ 1.66
CCDC88C-205ENST00000553403 BATF3Q9NR55 127 aa25.39■■□□□ 1.66
CCDC88C-205ENST00000553403 SLC25A37Q9NYZ2 338 aa25.39■■□□□ 1.66
CCDC88C-205ENST00000553403 CNOT11Q9UKZ1 510 aaKnown RBP25.39■■□□□ 1.66
CCDC88C-205ENST00000553403 PLAGL1Q9UM63 463 aa25.39■■□□□ 1.66
CCDC88C-205ENST00000553403 CACNB4O00305 520 aaPredicted RBP25.39■■□□□ 1.65
CCDC88C-205ENST00000553403 ETHE1O95571 254 aa25.39■■□□□ 1.65
CCDC88C-205ENST00000553403 ACP5P13686 325 aa25.39■■□□□ 1.65
CCDC88C-205ENST00000553403 GLULP15104 373 aa25.39■■□□□ 1.65
CCDC88C-205ENST00000553403 OR4D2P58180 307 aa25.39■■□□□ 1.65
CCDC88C-205ENST00000553403 PGS1Q32NB8 556 aa25.39■■□□□ 1.65
CCDC88C-205ENST00000553403 LPCAT2Q7L5N7 544 aa25.39■■□□□ 1.65
CCDC88C-205ENST00000553403 CHST15Q7LFX5 561 aaPredicted RBP25.39■■□□□ 1.65
CCDC88C-205ENST00000553403 ADGRG5Q8IZF4 528 aa25.39■■□□□ 1.65
CCDC88C-205ENST00000553403 C1orf52Q8N6N3 182 aaKnown RBP25.39■■□□□ 1.65
CCDC88C-205ENST00000553403 LMNTD1Q8N9Z9 388 aa25.39■■□□□ 1.65
CCDC88C-205ENST00000553403 SCARF2Q96GP6 870 aaPredicted RBP25.39■■□□□ 1.65
CCDC88C-205ENST00000553403 BTBD1Q9H0C5 482 aa25.39■■□□□ 1.65
CCDC88C-205ENST00000553403 KCNK12Q9HB15 430 aa25.39■■□□□ 1.65
CCDC88C-205ENST00000553403 UQCRBP14927 111 aa25.38■■□□□ 1.65
CCDC88C-205ENST00000553403 PIK3CBP42338 1070 aa25.38■■□□□ 1.65
CCDC88C-205ENST00000553403 KIR3DL1P43629 444 aa25.38■■□□□ 1.65
CCDC88C-205ENST00000553403 RAE1P78406 368 aaKnown RBP25.38■■□□□ 1.65
CCDC88C-205ENST00000553403 PHEXP78562 749 aa25.38■■□□□ 1.65
CCDC88C-205ENST00000553403 KLC1Q07866 573 aa25.38■■□□□ 1.65
CCDC88C-205ENST00000553403 FBXO43Q4G163 708 aa25.38■■□□□ 1.65
CCDC88C-205ENST00000553403 PYCR3Q53H96 274 aa25.38■■□□□ 1.65
CCDC88C-205ENST00000553403 ERMP1Q7Z2K6 904 aa25.38■■□□□ 1.65
CCDC88C-205ENST00000553403 TMEM132CQ8N3T6 1108 aa25.38■■□□□ 1.65
CCDC88C-205ENST00000553403 HLA-CQ95604 372 aa25.38■■□□□ 1.65
CCDC88C-205ENST00000553403 ZNF583Q96ND8 569 aa25.38■■□□□ 1.65
CCDC88C-205ENST00000553403 CCDC115Q96NT0 180 aa25.38■■□□□ 1.65
CCDC88C-205ENST00000553403 NR1H4Q96RI1 486 aaPredicted RBP25.38■■□□□ 1.65
CCDC88C-205ENST00000553403 PELI2Q9HAT8 420 aa25.38■■□□□ 1.65
CCDC88C-205ENST00000553403 DMRT3Q9NQL9 472 aa25.38■■□□□ 1.65
CCDC88C-205ENST00000553403 PRR19A6NJB7 356 aa25.37■■□□□ 1.65
CCDC88C-205ENST00000553403 LRATO95237 230 aa25.37■■□□□ 1.65
CCDC88C-205ENST00000553403 ACADMP11310 421 aa25.37■■□□□ 1.65
CCDC88C-205ENST00000553403 MTHFD1P11586 935 aaKnown RBP25.37■■□□□ 1.65
CCDC88C-205ENST00000553403 HOXB9P17482 250 aaPredicted RBP25.37■■□□□ 1.65
CCDC88C-205ENST00000553403 HRH2P25021 359 aa25.37■■□□□ 1.65
CCDC88C-205ENST00000553403 TRPC1P48995 793 aa25.37■■□□□ 1.65
CCDC88C-205ENST00000553403 TBCELQ5QJ74 424 aa25.37■■□□□ 1.65
CCDC88C-205ENST00000553403 ADNP2Q6IQ32 1131 aa25.37■■□□□ 1.65
CCDC88C-205ENST00000553403 GALNT18Q6P9A2 607 aa25.37■■□□□ 1.65
CCDC88C-205ENST00000553403 KRT78Q8N1N4 520 aa25.37■■□□□ 1.65
CCDC88C-205ENST00000553403 RAB42Q8N4Z0 105 aa25.37■■□□□ 1.65
CCDC88C-205ENST00000553403 DENND6BQ8NEG7 585 aa25.37■■□□□ 1.65
CCDC88C-205ENST00000553403 SMPDL3AQ92484 453 aa25.37■■□□□ 1.65
CCDC88C-205ENST00000553403 NELL1Q92832 810 aa25.37■■□□□ 1.65
CCDC88C-205ENST00000553403 MRGPRX1Q96LB2 322 aa25.37■■□□□ 1.65
CCDC88C-205ENST00000553403 MENTQ9BUN1 341 aa25.37■■□□□ 1.65
CCDC88C-205ENST00000553403 THUMPD3Q9BV44 507 aaKnown RBP25.37■■□□□ 1.65
CCDC88C-205ENST00000553403 VCXQ9H320 206 aa25.37■■□□□ 1.65
CCDC88C-205ENST00000553403 NCK1P16333 377 aa25.36■■□□□ 1.65
CCDC88C-205ENST00000553403 MAT2AP31153 395 aaKnown RBP25.36■■□□□ 1.65
CCDC88C-205ENST00000553403 TIA1P31483 386 aaKnown RBP eCLIP25.36■■□□□ 1.65
CCDC88C-205ENST00000553403 PPP2CBP62714 309 aa25.36■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms