RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 MAGEA10P43363 369 aaPredicted RBP15.8■□□□□ 0.12
CUX1-213ENST00000549414 ILF3Q12906 894 aaKnown RBP eCLIP15.8■□□□□ 0.124e-7■■■■□ 21.7
CUX1-213ENST00000549414 LRRTM4Q86VH4 590 aa15.8■□□□□ 0.12
CUX1-213ENST00000549414 UBASH3BQ8TF42 649 aa15.8■□□□□ 0.12
CUX1-213ENST00000549414 LOC285095A0A1B0GVY8 99 aa15.8■□□□□ 0.12
CUX1-213ENST00000549414 GLOD5A6NK44 160 aa15.8■□□□□ 0.12
CUX1-213ENST00000549414 ERI3O43414 337 aaKnown RBP15.8■□□□□ 0.12
CUX1-213ENST00000549414 ATXN1LP0C7T5 689 aaKnown RBP15.8■□□□□ 0.12
CUX1-213ENST00000549414 CMPK1P30085 196 aa15.8■□□□□ 0.12
CUX1-213ENST00000549414 IST1P53990 364 aa15.8■□□□□ 0.12
CUX1-213ENST00000549414 RAB8AP61006 207 aa15.8■□□□□ 0.12
CUX1-213ENST00000549414 ABHD18Q0P651 414 aa15.8■□□□□ 0.12
CUX1-213ENST00000549414 GTDC1Q4AE62 458 aa15.8■□□□□ 0.12
CUX1-213ENST00000549414 ARMC3Q5W041 872 aa15.8■□□□□ 0.12
CUX1-213ENST00000549414 CDC73Q6P1J9 531 aa15.8■□□□□ 0.12
CUX1-213ENST00000549414 ENPP7Q6UWV6 458 aa15.8■□□□□ 0.12
CUX1-213ENST00000549414 KBTBD6Q86V97 674 aa15.8■□□□□ 0.12
CUX1-213ENST00000549414 KCT2Q8NC54 265 aa15.8■□□□□ 0.12
CUX1-213ENST00000549414 L3HYPDHQ96EM0 354 aa15.8■□□□□ 0.12
CUX1-213ENST00000549414 C1GALT1C1Q96EU7 318 aa15.8■□□□□ 0.12
CUX1-213ENST00000549414 IL4I1Q96RQ9 567 aa15.8■□□□□ 0.12
CUX1-213ENST00000549414 ARNT2Q9HBZ2 717 aa15.8■□□□□ 0.12
CUX1-213ENST00000549414 FBXL12Q9NXK8 326 aa15.8■□□□□ 0.12
CUX1-213ENST00000549414 DLGAP4Q9Y2H0 992 aa15.8■□□□□ 0.12
CUX1-213ENST00000549414 OARD1Q9Y530 152 aa15.8■□□□□ 0.12
CUX1-213ENST00000549414 MFN2O95140 757 aa15.8■□□□□ 0.12
CUX1-213ENST00000549414 NR2F6P10588 404 aa15.8■□□□□ 0.12
CUX1-213ENST00000549414 SKP1P63208 163 aa15.8■□□□□ 0.12
CUX1-213ENST00000549414 PAGE3Q5JUK9 113 aa15.8■□□□□ 0.12
CUX1-213ENST00000549414 P2RY8Q86VZ1 359 aa15.8■□□□□ 0.12
CUX1-213ENST00000549414 COPS4Q9BT78 406 aa15.8■□□□□ 0.12
CUX1-213ENST00000549414 TOR3AQ9H497 397 aa15.8■□□□□ 0.12
CUX1-213ENST00000549414 XKR8Q9H6D3 395 aa15.8■□□□□ 0.12
CUX1-213ENST00000549414 COL24A1Q17RW2 1714 aa15.8■□□□□ 0.12
CUX1-213ENST00000549414 PRSS51A0A1B0GVH4 220 aa15.8■□□□□ 0.12
CUX1-213ENST00000549414 TNFRSF10BO14763 440 aa15.8■□□□□ 0.12
CUX1-213ENST00000549414 KLKB1P03952 638 aa15.8■□□□□ 0.12
CUX1-213ENST00000549414 LINGO3P0C6S8 592 aa15.8■□□□□ 0.12
CUX1-213ENST00000549414 ALPPL2P10696 532 aa15.8■□□□□ 0.12
CUX1-213ENST00000549414 ALAS2P22557 587 aa15.8■□□□□ 0.12
CUX1-213ENST00000549414 CARTPTQ16568 116 aa15.8■□□□□ 0.12
CUX1-213ENST00000549414 ZNF805Q5CZA5 627 aa15.8■□□□□ 0.12
CUX1-213ENST00000549414 HSH2DQ96JZ2 352 aa15.8■□□□□ 0.12
CUX1-213ENST00000549414 ADAP2Q9NPF8 381 aa15.8■□□□□ 0.12
CUX1-213ENST00000549414 PCDHGA7Q9Y5G6 932 aa15.8■□□□□ 0.12
CUX1-213ENST00000549414 WASH4PA8MWX3 477 aa15.79■□□□□ 0.12
CUX1-213ENST00000549414 NME6O75414 186 aaPredicted RBP15.79■□□□□ 0.12
CUX1-213ENST00000549414 CCNB2O95067 398 aa15.79■□□□□ 0.12
CUX1-213ENST00000549414 C6orf47O95873 294 aa15.79■□□□□ 0.12
CUX1-213ENST00000549414 ADRA1AP35348 466 aa15.79■□□□□ 0.12
CUX1-213ENST00000549414 OR1E2P47887 323 aa15.79■□□□□ 0.12
CUX1-213ENST00000549414 PNLIPRP1P54315 467 aa15.79■□□□□ 0.12
CUX1-213ENST00000549414 OR10G2Q8NGC3 310 aa15.79■□□□□ 0.12
CUX1-213ENST00000549414 DNASE1L2Q92874 299 aa15.79■□□□□ 0.12
CUX1-213ENST00000549414 ZBED6CLQ96FA7 236 aaPredicted RBP15.79■□□□□ 0.12
CUX1-213ENST00000549414 MUS81Q96NY9 551 aa15.79■□□□□ 0.12
CUX1-213ENST00000549414 MRPS30Q9NP92 439 aaKnown RBP15.79■□□□□ 0.12
CUX1-213ENST00000549414 PTGFRNQ9P2B2 879 aa15.79■□□□□ 0.12
CUX1-213ENST00000549414 GSTK1Q9Y2Q3 226 aa15.79■□□□□ 0.12
CUX1-213ENST00000549414 COLEC10Q9Y6Z7 277 aa15.79■□□□□ 0.12
CUX1-213ENST00000549414 EDDM13A0A1B0GTR0 161 aa15.79■□□□□ 0.12
CUX1-213ENST00000549414 H7BY64 318 aa15.79■□□□□ 0.12
CUX1-213ENST00000549414 GMFGO60234 142 aa15.79■□□□□ 0.12
CUX1-213ENST00000549414 CCDC159P0C7I6 412 aa15.79■□□□□ 0.12
CUX1-213ENST00000549414 HOXD9P28356 352 aaPredicted RBP15.79■□□□□ 0.12
CUX1-213ENST00000549414 ARSFP54793 590 aa15.79■□□□□ 0.12
CUX1-213ENST00000549414 MACC1Q6ZN28 852 aa15.79■□□□□ 0.12
CUX1-213ENST00000549414 LGI4Q8N135 537 aa15.79■□□□□ 0.12
CUX1-213ENST00000549414 NFKBIDQ8NI38 313 aa15.79■□□□□ 0.12
CUX1-213ENST00000549414 SIPA1Q96FS4 1042 aa15.79■□□□□ 0.12
CUX1-213ENST00000549414 CMTM7Q96FZ5 175 aa15.79■□□□□ 0.12
CUX1-213ENST00000549414 SLC35G5Q96KT7 338 aa15.79■□□□□ 0.12
CUX1-213ENST00000549414 PRAP1Q96NZ9 151 aa15.79■□□□□ 0.12
CUX1-213ENST00000549414 DPH2Q9BQC3 489 aaPredicted RBP15.79■□□□□ 0.12
CUX1-213ENST00000549414 SRMSQ9H3Y6 488 aa15.79■□□□□ 0.12
CUX1-213ENST00000549414 RB1P06400 928 aa15.79■□□□□ 0.12
CUX1-213ENST00000549414 NCBP2P52298 156 aaKnown RBP eCLIP15.79■□□□□ 0.126e-7■■□□□ 13.5
CUX1-213ENST00000549414 ARF5P84085 180 aa15.79■□□□□ 0.12
CUX1-213ENST00000549414 KANK2Q63ZY3 851 aa15.79■□□□□ 0.12
CUX1-213ENST00000549414 GPR26Q8NDV2 337 aa15.79■□□□□ 0.12
CUX1-213ENST00000549414 SRFBP1Q8NEF9 429 aaKnown RBP15.79■□□□□ 0.12
CUX1-213ENST00000549414 RAB8BQ92930 207 aa15.79■□□□□ 0.12
CUX1-213ENST00000549414 CCM2LQ9NUG4 571 aaPredicted RBP15.79■□□□□ 0.12
CUX1-213ENST00000549414 ATXN10Q9UBB4 475 aa15.79■□□□□ 0.12
CUX1-213ENST00000549414 LRRC72A6NJI9 287 aa15.78■□□□□ 0.12
CUX1-213ENST00000549414 SLC35G6P0C7Q6 338 aa15.78■□□□□ 0.12
CUX1-213ENST00000549414 SPINT3P49223 89 aa15.78■□□□□ 0.12
CUX1-213ENST00000549414 CCR8P51685 355 aa15.78■□□□□ 0.12
CUX1-213ENST00000549414 SGSHP51688 502 aa15.78■□□□□ 0.12
CUX1-213ENST00000549414 BNIP3Q12983 259 aa15.78■□□□□ 0.12
CUX1-213ENST00000549414 KRR1Q13601 381 aaKnown RBP15.78■□□□□ 0.12
CUX1-213ENST00000549414 MAVSQ7Z434 540 aa15.78■□□□□ 0.12
CUX1-213ENST00000549414 SCML4Q8N228 414 aa15.78■□□□□ 0.12
CUX1-213ENST00000549414 CLIP4Q8N3C7 705 aa15.78■□□□□ 0.12
CUX1-213ENST00000549414 ZUFSPQ96AP4 578 aa15.78■□□□□ 0.12
CUX1-213ENST00000549414 SCRN2Q96FV2 425 aa15.78■□□□□ 0.12
CUX1-213ENST00000549414 RHCGQ9UBD6 479 aa15.78■□□□□ 0.12
CUX1-213ENST00000549414 MRPS17Q9Y2R5 130 aaKnown RBP15.78■□□□□ 0.12
CUX1-213ENST00000549414 CAB39Q9Y376 341 aaPredicted RBP15.78■□□□□ 0.12
CUX1-213ENST00000549414 ZNF451Q9Y4E5 1061 aa15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms