RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 PAPD5Q8NDF8 572 aaKnown RBP13.85□□□□□ -0.19
LIMS1-215ENST00000544547 NETO1Q8TDF5 533 aa13.85□□□□□ -0.19
LIMS1-215ENST00000544547 UBE2FQ969M7 185 aa13.85□□□□□ -0.19
LIMS1-215ENST00000544547 NSUN3Q9H649 340 aaKnown RBP13.85□□□□□ -0.19
LIMS1-215ENST00000544547 RHCGQ9UBD6 479 aa13.85□□□□□ -0.19
LIMS1-215ENST00000544547 OAS3Q9Y6K5 1087 aaKnown RBP13.85□□□□□ -0.19
LIMS1-215ENST00000544547 MAST2Q6P0Q8 1798 aa13.85□□□□□ -0.19
LIMS1-215ENST00000544547 IGKV6D-21A0A0A0MT36 114 aa13.85□□□□□ -0.19
LIMS1-215ENST00000544547 ONECUT3O60422 494 aaPredicted RBP13.85□□□□□ -0.19
LIMS1-215ENST00000544547 PFKMP08237 780 aa13.85□□□□□ -0.19
LIMS1-215ENST00000544547 SMUG1Q53HV7 270 aa13.85□□□□□ -0.19
LIMS1-215ENST00000544547 SOWAHCQ53LP3 525 aaPredicted RBP13.85□□□□□ -0.19
LIMS1-215ENST00000544547 CPTPQ5TA50 214 aa13.85□□□□□ -0.19
LIMS1-215ENST00000544547 GARNL3Q5VVW2 1013 aa13.85□□□□□ -0.19
LIMS1-215ENST00000544547 LIPKQ5VXJ0 399 aa13.85□□□□□ -0.19
LIMS1-215ENST00000544547 GLB1L3Q8NCI6 653 aaPredicted RBP13.85□□□□□ -0.19
LIMS1-215ENST00000544547 OR4A15Q8NGL6 344 aa13.85□□□□□ -0.19
LIMS1-215ENST00000544547 TSPEARQ8WU66 669 aa13.85□□□□□ -0.19
LIMS1-215ENST00000544547 NUDT8Q8WV74 236 aa13.85□□□□□ -0.19
LIMS1-215ENST00000544547 KIAA1191Q96A73 305 aa13.85□□□□□ -0.19
LIMS1-215ENST00000544547 KLHL28Q9NXS3 571 aa13.85□□□□□ -0.19
LIMS1-215ENST00000544547 ST3GAL5Q9UNP4 418 aa13.85□□□□□ -0.19
LIMS1-215ENST00000544547 DERAQ9Y315 318 aa13.85□□□□□ -0.19
LIMS1-215ENST00000544547 NT5C1B-RDH14C9J2C7 533 aa13.85□□□□□ -0.19
LIMS1-215ENST00000544547 CCNDBP1O95273 360 aa13.85□□□□□ -0.19
LIMS1-215ENST00000544547 NDST3O95803 873 aa13.85□□□□□ -0.19
LIMS1-215ENST00000544547 TCF3P15923 654 aa13.85□□□□□ -0.19
LIMS1-215ENST00000544547 DNAJB1P25685 340 aa13.85□□□□□ -0.19
LIMS1-215ENST00000544547 ADARB1P78563 741 aaKnown RBP13.85□□□□□ -0.19
LIMS1-215ENST00000544547 FGFBP1Q14512 234 aa13.85□□□□□ -0.19
LIMS1-215ENST00000544547 XKR6Q5GH73 641 aa13.85□□□□□ -0.19
LIMS1-215ENST00000544547 NTAN1Q96AB6 310 aa13.85□□□□□ -0.19
LIMS1-215ENST00000544547 SLA2Q9H6Q3 261 aa13.85□□□□□ -0.19
LIMS1-215ENST00000544547 PLSCR3Q9NRY6 295 aa13.85□□□□□ -0.19
LIMS1-215ENST00000544547 PFDN2Q9UHV9 154 aa13.85□□□□□ -0.19
LIMS1-215ENST00000544547 CMAHPQ9Y471 501 aa13.85□□□□□ -0.19
LIMS1-215ENST00000544547 KMOO15229 486 aa13.84□□□□□ -0.19
LIMS1-215ENST00000544547 SMPD1P17405 629 aa13.84□□□□□ -0.19
LIMS1-215ENST00000544547 CSTF2P33240 577 aaKnown RBP eCLIP13.84□□□□□ -0.194e-7■■□□□ 14.4
LIMS1-215ENST00000544547 LRRC66Q68CR7 880 aa13.84□□□□□ -0.19
LIMS1-215ENST00000544547 Q6ZPB1 254 aaPredicted RBP13.84□□□□□ -0.19
LIMS1-215ENST00000544547 USP50Q70EL3 339 aaPredicted RBP13.84□□□□□ -0.19
LIMS1-215ENST00000544547 TM9SF3Q9HD45 589 aa13.84□□□□□ -0.19
LIMS1-215ENST00000544547 TNFRSF12AQ9NP84 129 aa13.84□□□□□ -0.19
LIMS1-215ENST00000544547 GABRDO14764 452 aa13.84□□□□□ -0.19
LIMS1-215ENST00000544547 GADD45GO95257 159 aa13.84□□□□□ -0.19
LIMS1-215ENST00000544547 SERPINA4P29622 427 aa13.84□□□□□ -0.19
LIMS1-215ENST00000544547 MAZP56270 477 aaKnown RBP13.84□□□□□ -0.19
LIMS1-215ENST00000544547 POLR2LP62875 67 aaKnown RBP13.84□□□□□ -0.19
LIMS1-215ENST00000544547 RHAGQ02094 409 aa13.84□□□□□ -0.19
LIMS1-215ENST00000544547 CREMQ03060 361 aa13.84□□□□□ -0.19
LIMS1-215ENST00000544547 ALFQ53S48 1182 aa13.84□□□□□ -0.19
LIMS1-215ENST00000544547 EEF1AKMT2Q5JPI9 291 aaKnown RBP13.84□□□□□ -0.19
LIMS1-215ENST00000544547 PAMR1Q6UXH9 720 aa13.84□□□□□ -0.19
LIMS1-215ENST00000544547 CYP4Z2PQ8N1L4 340 aa13.84□□□□□ -0.19
LIMS1-215ENST00000544547 FYTTD1Q96QD9 318 aaKnown RBP13.84□□□□□ -0.19
LIMS1-215ENST00000544547 DPH2Q9BQC3 489 aaPredicted RBP13.84□□□□□ -0.19
LIMS1-215ENST00000544547 CCDC3Q9BQI4 270 aa13.84□□□□□ -0.19
LIMS1-215ENST00000544547 AARSD1Q9BTE6 412 aaKnown RBP13.84□□□□□ -0.19
LIMS1-215ENST00000544547 PLAC1Q9HBJ0 212 aa13.84□□□□□ -0.19
LIMS1-215ENST00000544547 GTF2A1LQ9UNN4 478 aa13.84□□□□□ -0.19
LIMS1-215ENST00000544547 SPO11Q9Y5K1 396 aa13.84□□□□□ -0.19
LIMS1-215ENST00000544547 SLC35F4A4IF30 521 aa13.84□□□□□ -0.19
LIMS1-215ENST00000544547 FAM155AB1AL88 458 aaPredicted RBP13.84□□□□□ -0.19
LIMS1-215ENST00000544547 H3BM21 787 aa13.84□□□□□ -0.19
LIMS1-215ENST00000544547 PDPK1O15530 556 aa13.84□□□□□ -0.19
LIMS1-215ENST00000544547 FFAR2O15552 330 aa13.84□□□□□ -0.19
LIMS1-215ENST00000544547 CLDN9O95484 217 aa13.84□□□□□ -0.19
LIMS1-215ENST00000544547 CAPNS1P04632 268 aa13.84□□□□□ -0.19
LIMS1-215ENST00000544547 GP2P55259 537 aaKnown RBP13.84□□□□□ -0.19
LIMS1-215ENST00000544547 DEFA5Q01523 94 aa13.84□□□□□ -0.19
LIMS1-215ENST00000544547 SGCGQ13326 291 aa13.84□□□□□ -0.19
LIMS1-215ENST00000544547 USP41Q3LFD5 358 aa13.84□□□□□ -0.19
LIMS1-215ENST00000544547 ZNF362Q5T0B9 420 aaPredicted RBP13.84□□□□□ -0.19
LIMS1-215ENST00000544547 PXDC1Q5TGL8 231 aa13.84□□□□□ -0.19
LIMS1-215ENST00000544547 VN1R5Q7Z5H4 357 aa13.84□□□□□ -0.19
LIMS1-215ENST00000544547 ZFAND4Q86XD8 727 aa13.84□□□□□ -0.19
LIMS1-215ENST00000544547 FAM86B1Q8N7N1 296 aa13.84□□□□□ -0.19
LIMS1-215ENST00000544547 BRSK1Q8TDC3 778 aa13.84□□□□□ -0.19
LIMS1-215ENST00000544547 DPF3Q92784 378 aa13.84□□□□□ -0.19
LIMS1-215ENST00000544547 C8orf48Q96LL4 319 aa13.84□□□□□ -0.19
LIMS1-215ENST00000544547 TMEM138Q9NPI0 162 aa13.84□□□□□ -0.19
LIMS1-215ENST00000544547 A0A1W2PQ09 198 aa13.84□□□□□ -0.19
LIMS1-215ENST00000544547 ZNF487B1APH4 448 aa13.84□□□□□ -0.19
LIMS1-215ENST00000544547 DLGAP1O14490 977 aa13.84□□□□□ -0.19
LIMS1-215ENST00000544547 AP3D1O14617 1153 aa13.84□□□□□ -0.19
LIMS1-215ENST00000544547 MATN4O95460 622 aa13.84□□□□□ -0.19
LIMS1-215ENST00000544547 S1PR4O95977 384 aa13.84□□□□□ -0.19
LIMS1-215ENST00000544547 CATP04040 527 aaKnown RBP13.84□□□□□ -0.19
LIMS1-215ENST00000544547 ATF6P18850 670 aa13.84□□□□□ -0.19
LIMS1-215ENST00000544547 TGM3Q08188 693 aa13.84□□□□□ -0.19
LIMS1-215ENST00000544547 IDNKQ5T6J7 187 aa13.84□□□□□ -0.19
LIMS1-215ENST00000544547 TRAPPC5Q8IUR0 188 aa13.84□□□□□ -0.19
LIMS1-215ENST00000544547 FAM109AQ8N4B1 249 aa13.84□□□□□ -0.19
LIMS1-215ENST00000544547 ZNF599Q96NL3 588 aa13.84□□□□□ -0.19
LIMS1-215ENST00000544547 MTERF1Q99551 399 aaKnown RBP13.84□□□□□ -0.19
LIMS1-215ENST00000544547 CXCL16Q9H2A7 254 aa13.84□□□□□ -0.19
LIMS1-215ENST00000544547 UBFD1O14562 309 aaKnown RBP13.83□□□□□ -0.2
LIMS1-215ENST00000544547 KLHL18O94889 574 aa13.83□□□□□ -0.2
LIMS1-215ENST00000544547 GABARAPO95166 117 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms